Wall clock time and date at job start Tue Mar 31 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.50702 * 109.46929 * 119.99929 * 2 1 3 5 5 O 1.21279 * 120.00072 * 91.03627 * 4 2 1 6 6 N 1.34775 * 120.00190 * 271.03040 * 4 2 1 7 7 C 1.47026 * 125.64422 * 4.74238 * 6 4 2 8 8 C 1.54323 * 107.27494 * 180.96757 * 7 6 4 9 9 C 1.55153 * 102.86007 * 22.52736 * 8 7 6 10 10 C 1.47424 * 125.65293 * 185.05135 * 6 4 2 11 11 N 1.46903 * 109.47061 * 239.99412 * 2 1 3 12 12 C 1.46901 * 111.00038 * 177.42197 * 11 2 1 13 13 C 1.53233 * 109.34364 * 172.75177 * 12 11 2 14 14 N 1.47083 * 108.52162 * 53.82593 * 13 12 11 15 15 C 1.36938 * 120.87972 * 128.84221 * 14 13 12 16 16 H 1.07996 * 119.99896 * 330.29660 * 15 14 13 17 17 C 1.38810 * 119.99859 * 150.30649 * 15 14 13 18 18 N 1.31614 * 120.00032 * 161.48467 * 17 15 14 19 19 Si 1.86801 * 120.00063 * 341.48035 * 17 15 14 20 20 H 1.48498 * 109.46878 * 89.39491 * 19 17 15 21 21 H 1.48501 * 109.47249 * 209.39438 * 19 17 15 22 22 H 1.48494 * 109.47142 * 329.39604 * 19 17 15 23 23 C 1.47080 * 118.23974 * 308.81892 * 14 13 12 24 24 C 1.46901 * 110.99569 * 53.12225 * 11 2 1 25 25 H 1.09002 * 109.46993 * 292.56800 * 1 2 3 26 26 H 1.09004 * 109.46986 * 52.56968 * 1 2 3 27 27 H 1.08996 * 109.47010 * 172.57033 * 1 2 3 28 28 H 1.08995 * 109.88384 * 300.51168 * 7 6 4 29 29 H 1.08998 * 109.87961 * 61.67988 * 7 6 4 30 30 H 1.09001 * 110.91735 * 264.11293 * 8 7 6 31 31 H 1.08997 * 110.58822 * 140.78854 * 8 7 6 32 32 H 1.09005 * 111.00188 * 206.23471 * 9 8 7 33 33 H 1.08990 * 111.00494 * 82.38085 * 9 8 7 34 34 H 1.09005 * 110.36158 * 274.67321 * 10 6 4 35 35 H 1.09001 * 110.36237 * 36.88529 * 10 6 4 36 36 H 1.09008 * 109.49294 * 292.70820 * 12 11 2 37 37 H 1.08999 * 109.49275 * 52.78823 * 12 11 2 38 38 H 1.08997 * 109.62729 * 294.12254 * 13 12 11 39 39 H 1.08997 * 109.63640 * 173.53979 * 13 12 11 40 40 H 0.97001 * 120.00216 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.62881 * 291.47699 * 23 14 13 42 42 H 1.08995 * 109.63173 * 170.89122 * 23 14 13 43 43 H 1.08992 * 109.49636 * 307.20912 * 24 11 2 44 44 H 1.09005 * 109.49497 * 67.29613 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.2523 -1.9025 1.1951 6 7 2.2371 -0.0210 2.3703 7 6 1.9204 1.3992 2.5813 8 6 2.3476 1.7550 4.0209 9 6 3.4054 0.6676 4.3460 10 6 2.8217 -0.5641 3.6099 11 7 2.0196 -0.6926 -1.1994 12 6 3.4868 -0.6591 -1.2646 13 6 3.9637 -1.5408 -2.4235 14 7 3.2766 -1.1112 -3.6510 15 6 3.9824 -0.8335 -4.7911 16 1 4.9933 -0.4598 -4.7227 17 6 3.3985 -1.0323 -6.0346 18 7 3.9017 -0.4448 -7.0994 19 14 1.8985 -2.1338 -6.1968 20 1 0.6676 -1.3244 -6.0101 21 1 1.8833 -2.7539 -7.5460 22 1 1.9523 -3.1986 -5.1632 23 6 1.8112 -0.9881 -3.6215 24 6 1.4191 -0.1280 -2.4153 25 1 -0.3633 0.3944 0.9490 26 1 -0.3633 0.6246 -0.8161 27 1 -0.3633 -1.0190 -0.1329 28 1 2.4707 2.0118 1.8672 29 1 0.8490 1.5614 2.4638 30 1 1.5022 1.6877 4.7056 31 1 2.7936 2.7490 4.0537 32 1 3.4649 0.4890 5.4196 33 1 4.3808 0.9381 3.9419 34 1 2.0504 -1.0385 4.2168 35 1 3.6116 -1.2778 3.3757 36 1 3.8204 0.3660 -1.4265 37 1 3.9012 -1.0333 -0.3284 38 1 3.7219 -2.5828 -2.2143 39 1 5.0407 -1.4301 -2.5489 40 1 3.4939 -0.5839 -7.9684 41 1 1.3625 -1.9770 -3.5273 42 1 1.4652 -0.5118 -4.5388 43 1 0.3340 -0.1171 -2.3138 44 1 1.7815 0.8897 -2.5612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103882242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:13 Heat of formation + Delta-G solvation = 10.931278 kcal Electronic energy + Delta-G solvation = -23400.974771 eV Core-core repulsion = 20161.500239 eV Total energy + Delta-G solvation = -3239.474532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36775 -38.43644 -37.14569 -34.85853 -32.34290 -31.59237 -30.54808 -30.09575 -29.17230 -26.39595 -24.92297 -23.10747 -22.98069 -21.77845 -21.24238 -19.54614 -19.00939 -17.37020 -16.94815 -16.58682 -15.82232 -15.15877 -14.77145 -14.57098 -14.23936 -14.01928 -13.88270 -13.77275 -13.48124 -13.12789 -12.87572 -12.70655 -12.53809 -12.27564 -12.05173 -11.77086 -11.71528 -11.61405 -11.53386 -11.35259 -11.10730 -10.84917 -10.56313 -10.26574 -10.03325 -9.79423 -9.60159 -9.42136 -8.77287 -8.59068 -7.95619 -6.86249 -5.90630 -3.28550 2.65414 2.80751 3.36434 3.53356 3.60611 4.08158 4.20244 4.24620 4.52986 4.58537 4.67463 4.90812 5.01247 5.04914 5.07670 5.11925 5.28543 5.36232 5.36674 5.45228 5.50026 5.53530 5.62513 5.67836 5.76051 5.77699 5.80296 5.97028 6.01479 6.08041 6.13357 6.17397 6.31001 6.44791 6.63434 6.73357 6.97374 7.25920 7.47463 7.48886 8.02406 8.23920 8.38061 8.98667 9.76424 10.18059 11.25647 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.004172 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.218570 B = 6709.102120 C = 6895.426615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.054 0.946 4 C 0.536 3.464 5 O -0.512 6.512 6 N -0.628 5.628 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.134 4.134 10 C 0.106 3.894 11 N -0.513 5.513 12 C 0.044 3.956 13 C 0.154 3.846 14 N -0.609 5.609 15 C -0.258 4.258 16 H 0.084 0.916 17 C 0.023 3.977 18 N -0.912 5.912 19 Si 0.885 3.115 20 H -0.287 1.287 21 H -0.304 1.304 22 H -0.269 1.269 23 C 0.131 3.869 24 C 0.042 3.958 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 6.219 23.366 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 H 0.071 0.929 4 C 0.324 3.676 5 O -0.385 6.385 6 N -0.365 5.365 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.172 4.172 10 C -0.016 4.016 11 N -0.239 5.239 12 C -0.085 4.085 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.716 3.284 20 H -0.215 1.215 21 H -0.232 1.232 22 H -0.194 1.194 23 C 0.005 3.995 24 C -0.087 4.087 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.943 5.028 23.080 24.358 hybrid contribution -0.602 0.408 -0.208 0.757 sum -6.545 5.436 22.872 24.403 Atomic orbital electron populations 1.21810 0.92265 1.03871 1.01938 1.21550 0.97079 0.95611 0.90020 0.92873 1.20332 0.77260 0.87210 0.82811 1.90716 1.49785 1.14513 1.83473 1.48608 1.63980 1.11315 1.12622 1.22057 1.00628 0.82305 0.97473 1.22634 0.99314 0.99603 0.95380 1.22795 0.98919 0.94709 1.00798 1.22178 0.97825 0.96491 0.85149 1.61759 1.07794 1.54125 1.00221 1.22648 0.86494 0.99209 1.00158 1.20974 0.95980 0.95330 0.84882 1.44424 1.01183 1.78414 1.09331 1.18923 0.99841 1.37477 0.82414 0.89838 1.25329 0.98260 0.98779 0.95165 1.69815 1.42660 1.43816 0.99257 0.86918 0.82865 0.82485 0.76166 1.21474 1.23180 1.19416 1.21448 0.85543 0.97042 0.95445 1.22760 0.98373 0.97334 0.90233 0.92286 0.91032 0.90740 0.91349 0.91348 0.90476 0.89934 0.89812 0.90488 0.91676 0.90450 0.95207 0.91605 0.94890 0.91705 0.92800 0.94887 0.90621 0.91010 0.94599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.46 37.16 0.31 -1.38 16 2 C 0.07 1.01 2.01 -68.86 -0.14 0.87 16 3 H 0.05 0.71 7.12 -51.93 -0.37 0.34 16 4 C 0.54 8.12 5.87 -10.99 -0.06 8.06 16 5 O -0.51 -9.85 16.20 5.56 0.09 -9.76 16 6 N -0.63 -7.20 3.33 -170.52 -0.57 -7.76 16 7 C 0.10 0.78 6.27 -3.06 -0.02 0.77 16 8 C -0.13 -0.74 6.95 -24.90 -0.17 -0.91 16 9 C -0.13 -0.85 7.08 -24.59 -0.17 -1.03 16 10 C 0.11 1.01 6.89 -2.53 -0.02 1.00 16 11 N -0.51 -9.38 4.20 -227.72 -0.96 -10.34 16 12 C 0.04 0.84 5.36 -3.70 -0.02 0.82 16 13 C 0.15 3.40 6.69 -3.60 -0.02 3.37 16 14 N -0.61 -15.35 2.78 -172.01 -0.48 -15.83 16 15 C -0.26 -7.46 10.06 -15.06 -0.15 -7.61 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.02 0.69 5.25 -17.43 -0.09 0.60 16 18 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 19 Si 0.89 23.10 24.31 -169.99 -4.13 18.97 16 20 H -0.29 -7.11 6.54 56.52 0.37 -6.74 16 21 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 22 H -0.27 -7.08 6.73 56.52 0.38 -6.70 16 23 C 0.13 3.01 4.35 -3.60 -0.02 3.00 16 24 C 0.04 0.78 5.26 -3.70 -0.02 0.76 16 25 H 0.06 0.57 7.62 -51.93 -0.40 0.17 16 26 H 0.07 0.79 6.63 -51.93 -0.34 0.44 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 29 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.07 1.22 6.49 -51.93 -0.34 0.88 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.38 7.95 -51.93 -0.41 0.97 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.03 0.78 6.94 -51.93 -0.36 0.42 16 42 H 0.08 1.84 4.83 -51.93 -0.25 1.59 16 43 H 0.07 1.15 5.95 -51.93 -0.31 0.84 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -34.57 332.22 -8.27 -42.84 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -7.41 Total: -3.76 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.59 Total: 8.31 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -1.23 Total: -61.61 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.13 Total: 18.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.57 -8.27 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.770 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds