Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47057 * 2 1 4 4 N 1.29938 * 126.28909 * 90.02435 * 3 2 1 5 5 O 1.21302 * 110.25537 * 179.97438 * 4 3 2 6 6 C 1.33642 * 109.80686 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.55316 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47164 * 269.97761 * 7 6 5 9 9 C 1.46901 * 111.00214 * 159.81024 * 8 7 6 10 10 C 1.50699 * 109.47285 * 191.16490 * 9 8 7 11 11 H 1.08001 * 119.99673 * 355.04580 * 10 9 8 12 12 C 1.37876 * 120.00252 * 175.04071 * 10 9 8 13 13 N 1.31513 * 119.99475 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47411 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47134 * 120.00663 * 14 12 10 17 17 H 1.48506 * 109.47169 * 240.00052 * 14 12 10 18 18 C 1.46907 * 110.99759 * 283.76258 * 8 7 6 19 19 C 1.52995 * 109.46994 * 314.09391 * 18 8 7 20 20 C 1.53006 * 109.47071 * 84.23747 * 19 18 8 21 21 C 1.52998 * 109.46994 * 204.23546 * 19 18 8 22 22 C 1.52998 * 109.47256 * 324.23777 * 19 18 8 23 23 N 1.31128 * 106.89931 * 359.76533 * 6 5 4 24 24 H 1.08998 * 109.47346 * 59.99998 * 1 2 3 25 25 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47012 * 299.99773 * 1 2 3 27 27 H 1.08994 * 109.46979 * 239.99987 * 2 1 3 28 28 H 1.08998 * 109.47346 * 120.00001 * 2 1 3 29 29 H 1.09000 * 109.47024 * 29.97249 * 7 6 5 30 30 H 1.08998 * 109.47842 * 149.97368 * 7 6 5 31 31 H 1.09003 * 109.46828 * 311.16619 * 9 8 7 32 32 H 1.09001 * 109.46848 * 71.16392 * 9 8 7 33 33 H 0.97006 * 119.99289 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46708 * 74.09767 * 18 8 7 35 35 H 1.08999 * 109.46455 * 194.09110 * 18 8 7 36 36 H 1.08997 * 109.47035 * 60.74508 * 20 19 18 37 37 H 1.09003 * 109.46545 * 180.74379 * 20 19 18 38 38 H 1.08999 * 109.46958 * 300.74425 * 20 19 18 39 39 H 1.09007 * 109.47251 * 60.00117 * 21 19 18 40 40 H 1.08997 * 109.47516 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.47246 * 300.00500 * 21 19 18 42 42 H 1.08996 * 109.47428 * 52.78074 * 22 19 18 43 43 H 1.09003 * 109.46936 * 172.78782 * 22 19 18 44 44 H 1.09004 * 109.47022 * 292.78074 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 1.0474 5 8 2.6780 3.2448 0.7123 6 6 2.7067 3.3279 -0.6212 7 6 3.1286 4.5226 -1.4371 8 7 1.9598 5.3723 -1.7019 9 6 2.3707 6.7375 -2.0560 10 6 1.1653 7.6420 -2.0517 11 1 0.1808 7.2288 -1.8890 12 6 1.3193 8.9969 -2.2553 13 7 2.5182 9.4998 -2.4538 14 14 -0.1749 10.1178 -2.2506 15 1 -1.3981 9.3112 -2.0093 16 1 -0.0297 11.1318 -1.1754 17 1 -0.2847 10.8017 -3.5642 18 6 1.1118 4.7892 -2.7503 19 6 1.9878 4.3266 -3.9162 20 6 2.5298 2.9262 -3.6225 21 6 1.1537 4.2921 -5.1983 22 6 3.1558 5.2987 -4.0936 23 7 2.3017 2.1698 -1.0841 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8754 5.0938 -0.8857 30 1 3.5542 4.1854 -2.3822 31 1 3.0982 7.0981 -1.3288 32 1 2.8200 6.7356 -3.0491 33 1 2.6265 10.4531 -2.5974 34 1 0.5670 3.9367 -2.3444 35 1 0.4033 5.5386 -3.1030 36 1 1.6980 2.2310 -3.5093 37 1 3.1645 2.6021 -4.4473 38 1 3.1130 2.9480 -2.7020 39 1 0.7675 5.2897 -5.4076 40 1 1.7776 3.9621 -6.0289 41 1 0.3215 3.5995 -5.0719 42 1 3.6742 5.4212 -3.1427 43 1 3.8482 4.9029 -4.8366 44 1 2.7771 6.2646 -4.4280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109812059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = 123.931971 kcal Electronic energy + Delta-G solvation = -23769.158266 eV Core-core repulsion = 20534.583812 eV Total energy + Delta-G solvation = -3234.574454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.25175 -39.73701 -36.10180 -34.13830 -33.69561 -32.39555 -31.26260 -28.47865 -27.85525 -26.55415 -26.20657 -24.92315 -24.18463 -22.73773 -21.15465 -20.29212 -18.49883 -17.76259 -17.05270 -16.53018 -15.70977 -15.07418 -14.93052 -14.52228 -14.33913 -14.04718 -13.89547 -13.21162 -13.04524 -12.79895 -12.48064 -12.22448 -12.08760 -11.79294 -11.55437 -11.42870 -11.33327 -11.24760 -11.11746 -11.03027 -10.92546 -10.74265 -10.71383 -10.47971 -10.19321 -10.09866 -9.77683 -9.65803 -9.57500 -9.19866 -8.44556 -7.18898 -6.05517 -4.04481 1.46713 2.47842 3.19464 3.29521 3.37854 3.42436 3.82559 4.25111 4.41406 4.87127 5.00645 5.07098 5.14629 5.24164 5.30827 5.32448 5.41125 5.43148 5.58490 5.62831 5.74511 5.85636 5.93964 5.99210 6.01608 6.01976 6.09103 6.18752 6.23155 6.27787 6.34619 6.40711 6.53060 6.63002 6.78697 6.85769 6.92837 7.16967 7.33095 7.72580 7.97389 8.10638 8.44871 8.48153 9.00300 9.57877 11.04921 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.005185 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.177412 B = 5398.751522 C = 5916.297160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C 0.160 3.840 4 N -0.395 5.395 5 O 0.077 5.923 6 C 0.216 3.784 7 C 0.092 3.908 8 N -0.524 5.524 9 C 0.153 3.847 10 C -0.502 4.502 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.070 3.930 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.133 4.133 22 C -0.163 4.163 23 N -0.480 5.480 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 -15.474 -0.931 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 C -0.113 4.113 4 N -0.105 5.105 5 O 0.021 5.979 6 C -0.005 4.005 7 C -0.037 4.037 8 N -0.249 5.249 9 C 0.030 3.970 10 C -0.541 4.541 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.059 4.059 19 C -0.104 4.104 20 C -0.210 4.210 21 C -0.190 4.190 22 C -0.219 4.219 23 N -0.215 5.215 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.341 -15.838 0.006 15.841 hybrid contribution -0.364 0.890 -0.650 1.161 sum -0.023 -14.948 -0.644 14.962 Atomic orbital electron populations 1.21723 0.93553 1.02340 1.02859 1.19831 0.96637 0.86160 1.04073 1.25887 1.00822 1.00282 0.84315 1.74569 1.18284 0.93299 1.24337 1.85298 1.60510 1.26727 1.25369 1.29224 0.93465 0.96280 0.81540 1.21811 0.95554 0.88603 0.97737 1.62233 1.15603 1.03714 1.43339 1.20809 0.97536 0.80686 0.97995 1.21138 0.93533 0.91507 1.47917 0.92075 1.24905 0.95860 0.98008 0.95606 1.69947 1.21266 1.12893 1.49653 0.86499 0.83098 0.80702 0.77473 1.19777 1.21066 1.21163 1.22249 0.95757 0.98892 0.88972 1.21218 0.96614 0.95771 0.96769 1.22630 1.01427 0.95404 1.01493 1.21784 0.99129 1.01671 0.96458 1.22775 0.97519 0.99882 1.01770 1.72170 1.18823 1.02296 1.28216 0.91881 0.91439 0.92397 0.88959 0.89624 0.88227 0.85996 0.94970 0.93842 0.92997 0.92654 0.89378 0.92449 0.94414 0.89808 0.92389 0.93476 0.93267 0.90761 0.94109 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.03 -0.30 6.56 -27.88 -0.18 -0.48 16 3 C 0.16 2.38 7.47 -156.38 -1.17 1.21 16 4 N -0.40 -6.63 12.16 30.90 0.38 -6.25 16 5 O 0.08 1.35 11.31 18.10 0.20 1.56 16 6 C 0.22 3.57 7.16 -13.06 -0.09 3.48 16 7 C 0.09 1.53 4.07 -4.97 -0.02 1.51 16 8 N -0.52 -10.41 4.61 -237.51 -1.09 -11.51 16 9 C 0.15 3.56 4.03 -4.98 -0.02 3.54 16 10 C -0.50 -13.27 8.37 -34.44 -0.29 -13.55 16 11 H 0.06 1.64 7.18 -52.49 -0.38 1.27 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.07 1.28 4.77 -3.82 -0.02 1.26 16 19 C -0.10 -1.60 0.77 -154.51 -0.12 -1.72 16 20 C -0.15 -2.20 6.61 37.16 0.25 -1.95 16 21 C -0.13 -1.92 8.35 37.16 0.31 -1.61 16 22 C -0.16 -2.69 6.21 37.16 0.23 -2.46 16 23 N -0.48 -7.53 8.39 -9.87 -0.08 -7.62 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.57 7.71 -51.93 -0.40 1.17 16 30 H 0.12 1.87 2.41 -51.93 -0.13 1.75 16 31 H 0.03 0.82 7.80 -51.93 -0.40 0.41 16 32 H 0.04 1.01 3.18 -52.06 -0.17 0.84 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 35 H 0.09 1.80 6.34 -51.93 -0.33 1.47 16 36 H 0.06 0.84 7.82 -51.93 -0.41 0.44 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.24 2.53 -51.93 -0.13 1.11 16 39 H 0.06 0.89 8.12 -51.92 -0.42 0.46 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.26 3.30 -51.93 -0.17 1.08 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.53 6.66 -51.93 -0.35 1.19 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -28.39 332.75 -7.34 -35.74 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.62 Total: 1.90 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.85 Total: -10.40 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.07 Total: -49.89 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.39 -7.34 -35.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109812059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.667 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds