Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47057 * 2 1 4 4 N 1.29938 * 126.28909 * 90.02435 * 3 2 1 5 5 O 1.21302 * 110.25537 * 179.97438 * 4 3 2 6 6 C 1.33642 * 109.80686 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.55316 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47164 * 269.97761 * 7 6 5 9 9 C 1.46901 * 111.00214 * 159.81024 * 8 7 6 10 10 C 1.50699 * 109.47285 * 191.16490 * 9 8 7 11 11 H 1.08001 * 119.99673 * 355.04580 * 10 9 8 12 12 C 1.37876 * 120.00252 * 175.04071 * 10 9 8 13 13 N 1.31513 * 119.99475 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47411 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47134 * 120.00663 * 14 12 10 17 17 H 1.48506 * 109.47169 * 240.00052 * 14 12 10 18 18 C 1.46907 * 110.99759 * 283.76258 * 8 7 6 19 19 C 1.52995 * 109.46994 * 314.09391 * 18 8 7 20 20 C 1.53006 * 109.47071 * 84.23747 * 19 18 8 21 21 C 1.52998 * 109.46994 * 204.23546 * 19 18 8 22 22 C 1.52998 * 109.47256 * 324.23777 * 19 18 8 23 23 N 1.31128 * 106.89931 * 359.76533 * 6 5 4 24 24 H 1.08998 * 109.47346 * 59.99998 * 1 2 3 25 25 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47012 * 299.99773 * 1 2 3 27 27 H 1.08994 * 109.46979 * 239.99987 * 2 1 3 28 28 H 1.08998 * 109.47346 * 120.00001 * 2 1 3 29 29 H 1.09000 * 109.47024 * 29.97249 * 7 6 5 30 30 H 1.08998 * 109.47842 * 149.97368 * 7 6 5 31 31 H 1.09003 * 109.46828 * 311.16619 * 9 8 7 32 32 H 1.09001 * 109.46848 * 71.16392 * 9 8 7 33 33 H 0.97006 * 119.99289 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.46708 * 74.09767 * 18 8 7 35 35 H 1.08999 * 109.46455 * 194.09110 * 18 8 7 36 36 H 1.08997 * 109.47035 * 60.74508 * 20 19 18 37 37 H 1.09003 * 109.46545 * 180.74379 * 20 19 18 38 38 H 1.08999 * 109.46958 * 300.74425 * 20 19 18 39 39 H 1.09007 * 109.47251 * 60.00117 * 21 19 18 40 40 H 1.08997 * 109.47516 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.47246 * 300.00500 * 21 19 18 42 42 H 1.08996 * 109.47428 * 52.78074 * 22 19 18 43 43 H 1.09003 * 109.46936 * 172.78782 * 22 19 18 44 44 H 1.09004 * 109.47022 * 292.78074 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 1.0474 5 8 2.6780 3.2448 0.7123 6 6 2.7067 3.3279 -0.6212 7 6 3.1286 4.5226 -1.4371 8 7 1.9598 5.3723 -1.7019 9 6 2.3707 6.7375 -2.0560 10 6 1.1653 7.6420 -2.0517 11 1 0.1808 7.2288 -1.8890 12 6 1.3193 8.9969 -2.2553 13 7 2.5182 9.4998 -2.4538 14 14 -0.1749 10.1178 -2.2506 15 1 -1.3981 9.3112 -2.0093 16 1 -0.0297 11.1318 -1.1754 17 1 -0.2847 10.8017 -3.5642 18 6 1.1118 4.7892 -2.7503 19 6 1.9878 4.3266 -3.9162 20 6 2.5298 2.9262 -3.6225 21 6 1.1537 4.2921 -5.1983 22 6 3.1558 5.2987 -4.0936 23 7 2.3017 2.1698 -1.0841 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8754 5.0938 -0.8857 30 1 3.5542 4.1854 -2.3822 31 1 3.0982 7.0981 -1.3288 32 1 2.8200 6.7356 -3.0491 33 1 2.6265 10.4531 -2.5974 34 1 0.5670 3.9367 -2.3444 35 1 0.4033 5.5386 -3.1030 36 1 1.6980 2.2310 -3.5093 37 1 3.1645 2.6021 -4.4473 38 1 3.1130 2.9480 -2.7020 39 1 0.7675 5.2897 -5.4076 40 1 1.7776 3.9621 -6.0289 41 1 0.3215 3.5995 -5.0719 42 1 3.6742 5.4212 -3.1427 43 1 3.8482 4.9029 -4.8366 44 1 2.7771 6.2646 -4.4280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109812059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = 106.292364 kcal Electronic energy + Delta-G solvation = -23769.923176 eV Core-core repulsion = 20534.583812 eV Total energy + Delta-G solvation = -3235.339365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.50821 -41.18281 -37.26599 -35.58410 -35.11761 -34.05646 -32.46766 -29.99739 -29.35006 -27.95363 -27.61110 -25.93638 -25.79802 -24.04958 -22.63659 -21.64386 -19.82794 -19.04694 -18.57487 -18.16990 -17.13179 -16.80142 -16.27230 -15.94107 -15.55140 -15.49354 -15.03235 -14.59713 -14.20372 -14.09743 -13.91353 -13.67735 -13.37305 -13.03811 -12.85971 -12.81533 -12.70150 -12.58189 -12.48049 -12.38728 -12.28442 -12.13680 -12.08091 -11.98084 -11.85592 -11.55149 -11.36041 -11.14826 -10.95551 -10.86165 -10.47431 -8.78414 -8.12886 -6.17791 0.16648 1.26647 1.40685 1.43578 1.54311 1.89369 2.44092 2.69307 3.11861 3.19752 3.42921 3.91016 3.96113 4.02221 4.11180 4.17271 4.25447 4.30735 4.37146 4.54562 4.60497 4.70116 4.77922 4.86003 4.90743 4.92880 4.95606 4.98982 5.05412 5.10618 5.14201 5.18748 5.26882 5.29954 5.35577 5.43054 5.52093 5.56558 5.67983 5.73941 6.11823 6.35594 6.59299 6.93989 7.20993 7.47775 8.96540 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.005185 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.177412 B = 5398.751522 C = 5916.297160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C 0.165 3.835 4 N -0.414 5.414 5 O 0.056 5.944 6 C 0.211 3.789 7 C 0.096 3.904 8 N -0.540 5.540 9 C 0.166 3.834 10 C -0.514 4.514 11 H 0.050 0.950 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.279 1.279 18 C 0.076 3.924 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.159 4.159 23 N -0.476 5.476 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.006 0.994 32 H 0.049 0.951 33 H 0.262 0.738 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -17.529 -1.715 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.108 4.108 4 N -0.127 5.127 5 O 0.004 5.996 6 C -0.010 4.010 7 C -0.032 4.032 8 N -0.264 5.264 9 C 0.042 3.958 10 C -0.552 4.552 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.568 5.568 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.204 1.204 18 C -0.052 4.052 19 C -0.099 4.099 20 C -0.200 4.200 21 C -0.187 4.187 22 C -0.215 4.215 23 N -0.211 5.211 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.053 -17.888 -0.777 17.905 hybrid contribution -0.289 1.440 -0.390 1.520 sum -0.236 -16.447 -1.168 16.490 Atomic orbital electron populations 1.21705 0.92860 1.03942 1.01520 1.20125 0.97054 0.83722 1.05887 1.26711 0.99089 1.01536 0.83490 1.74578 1.19530 0.93388 1.25207 1.85279 1.61204 1.27417 1.25719 1.29135 0.93864 0.96561 0.81452 1.21816 0.94394 0.88367 0.98663 1.62012 1.17209 1.03008 1.44193 1.20536 0.95719 0.82208 0.97354 1.21429 0.94075 0.92373 1.47366 0.93169 1.25608 0.98278 0.99380 0.95477 1.70037 1.22887 1.13217 1.50654 0.85579 0.80065 0.78825 0.77602 1.19621 1.20888 1.20427 1.22138 0.95566 0.97810 0.89685 1.21158 0.96005 0.96432 0.96258 1.22503 1.01524 0.93980 1.01958 1.21748 0.99565 1.01152 0.96245 1.22647 0.98152 0.98655 1.02032 1.72191 1.18526 1.01980 1.28442 0.93110 0.88397 0.93793 0.86981 0.87951 0.87918 0.84259 0.97597 0.93374 0.92887 0.92624 0.92050 0.92430 0.92499 0.90312 0.93966 0.91552 0.92243 0.91477 0.91540 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.75 16 2 C -0.03 -0.54 6.56 29.85 0.20 -0.35 16 3 C 0.16 4.64 7.47 138.46 1.03 5.68 16 4 N -0.41 -13.61 12.16 -60.33 -0.73 -14.34 16 5 O 0.06 1.96 11.31 74.84 0.85 2.80 16 6 C 0.21 6.88 7.16 88.38 0.63 7.51 16 7 C 0.10 3.19 4.07 85.56 0.35 3.54 16 8 N -0.54 -21.80 4.61 -905.34 -4.17 -25.98 16 9 C 0.17 7.98 4.03 85.56 0.34 8.32 16 10 C -0.51 -27.85 8.37 25.60 0.21 -27.64 16 11 H 0.05 2.77 7.18 -2.91 -0.02 2.75 16 12 C 0.01 0.59 5.46 84.65 0.46 1.05 16 13 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 14 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 C 0.08 2.81 4.77 86.30 0.41 3.22 16 19 C -0.10 -2.92 0.77 -52.18 -0.04 -2.96 16 20 C -0.14 -3.73 6.61 71.98 0.48 -3.26 16 21 C -0.13 -3.52 8.35 71.98 0.60 -2.92 16 22 C -0.16 -5.11 6.21 71.98 0.45 -4.66 16 23 N -0.48 -14.22 8.39 -303.21 -2.54 -16.76 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.10 3.29 7.71 -2.39 -0.02 3.27 16 30 H 0.14 4.13 2.41 -2.39 -0.01 4.13 16 31 H 0.01 0.31 7.80 -2.39 -0.02 0.29 16 32 H 0.05 2.30 3.18 -2.51 -0.01 2.30 16 33 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 34 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 35 H 0.06 2.57 6.34 -2.39 -0.02 2.56 16 36 H 0.06 1.52 7.82 -2.39 -0.02 1.50 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 2.16 2.53 -2.39 -0.01 2.15 16 39 H 0.04 1.27 8.12 -2.38 -0.02 1.25 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 2.25 3.30 -2.39 -0.01 2.24 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.90 6.66 -2.38 -0.02 1.88 16 Total: -1.00 -61.40 332.75 2.55 -58.85 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.00 Total: 16.58 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.84 Total: -14.22 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -7.17 Total: -109.85 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.85 Total: 2.80 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.40 2.55 -58.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109812059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.143 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds