Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47115 * 2 1 4 4 N 1.30272 * 126.27751 * 90.02345 * 3 2 1 5 5 N 1.28670 * 109.37904 * 179.97438 * 4 3 2 6 6 C 1.30279 * 109.37994 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.28147 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46690 * 90.02874 * 7 6 5 9 9 C 1.46904 * 110.99808 * 189.53222 * 8 7 6 10 10 C 1.50700 * 109.46929 * 189.30304 * 9 8 7 11 11 H 1.08000 * 120.00059 * 4.79178 * 10 9 8 12 12 C 1.37874 * 119.99985 * 184.79787 * 10 9 8 13 13 N 1.31512 * 120.00337 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00006 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47435 * 89.99875 * 14 12 10 16 16 H 1.48503 * 109.47090 * 210.00195 * 14 12 10 17 17 H 1.48501 * 109.46806 * 329.99778 * 14 12 10 18 18 C 1.46905 * 111.00145 * 65.57760 * 8 7 6 19 19 C 1.52995 * 109.47016 * 51.29911 * 18 8 7 20 20 C 1.53002 * 109.47131 * 35.43579 * 19 18 8 21 21 C 1.52995 * 109.47329 * 155.43588 * 19 18 8 22 22 C 1.53006 * 109.47024 * 275.43543 * 19 18 8 23 23 O 1.34361 * 107.43718 * 359.76248 * 6 5 4 24 24 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47124 * 60.00003 * 1 2 3 26 26 H 1.08998 * 109.47090 * 300.00174 * 1 2 3 27 27 H 1.08993 * 109.47508 * 119.99806 * 2 1 3 28 28 H 1.09000 * 109.47507 * 240.00463 * 2 1 3 29 29 H 1.09003 * 109.47398 * 210.02213 * 7 6 5 30 30 H 1.08997 * 109.47321 * 330.03101 * 7 6 5 31 31 H 1.08995 * 109.46774 * 309.29961 * 9 8 7 32 32 H 1.08992 * 109.47112 * 69.30022 * 9 8 7 33 33 H 0.96996 * 120.00480 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46654 * 171.30072 * 18 8 7 35 35 H 1.08999 * 109.47029 * 291.29535 * 18 8 7 36 36 H 1.08991 * 109.47075 * 59.26855 * 20 19 18 37 37 H 1.09006 * 109.46990 * 179.26502 * 20 19 18 38 38 H 1.08993 * 109.47211 * 299.26271 * 20 19 18 39 39 H 1.09008 * 109.46848 * 59.99679 * 21 19 18 40 40 H 1.08998 * 109.47511 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.47346 * 300.00140 * 21 19 18 42 42 H 1.08997 * 109.46915 * 77.65065 * 22 19 18 43 43 H 1.09004 * 109.46916 * 197.64426 * 22 19 18 44 44 H 1.08999 * 109.47014 * 317.64439 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2897 2.1475 1.0502 5 7 2.7005 3.3081 0.6762 6 6 2.7196 3.3611 -0.6254 7 6 3.1370 4.5418 -1.4637 8 7 4.5784 4.4636 -1.7362 9 6 5.0654 5.7041 -2.3545 10 6 6.4831 5.5073 -2.8262 11 1 6.9469 4.5349 -2.7517 12 6 7.1880 6.5688 -3.3527 13 7 8.4254 6.3974 -3.7639 14 14 6.3855 8.2507 -3.4820 15 1 6.6424 9.0189 -2.2374 16 1 6.9545 8.9828 -4.6420 17 1 4.9215 8.0875 -3.6696 18 6 4.8934 3.2988 -2.5742 19 6 3.9883 3.2983 -3.8077 20 6 3.7404 4.7391 -4.2590 21 6 4.6658 2.5196 -4.9371 22 6 2.6535 2.6358 -3.4606 23 8 2.3034 2.1684 -1.0831 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 2.5882 4.5310 -2.4054 30 1 2.9184 5.4645 -0.9262 31 1 4.4320 5.9595 -3.2039 32 1 5.0346 6.5112 -1.6227 33 1 8.9212 7.1440 -4.1346 34 1 5.9359 3.3487 -2.8884 35 1 4.7295 2.3852 -2.0028 36 1 4.6924 5.2151 -4.4938 37 1 3.1063 4.7381 -5.1456 38 1 3.2460 5.2904 -3.4592 39 1 4.8424 1.4931 -4.6155 40 1 4.0208 2.5188 -5.8157 41 1 5.6167 2.9915 -5.1844 42 1 2.0349 3.3367 -2.9002 43 1 2.1395 2.3513 -4.3788 44 1 2.8353 1.7474 -2.8558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109813883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = 96.964594 kcal Electronic energy + Delta-G solvation = -23998.415253 eV Core-core repulsion = 20762.671405 eV Total energy + Delta-G solvation = -3235.743847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.02246 -39.72468 -35.95214 -34.65544 -33.99131 -32.66087 -30.87731 -28.56015 -28.00509 -26.68635 -26.18974 -24.79747 -24.10883 -22.07553 -21.69818 -20.31481 -18.68976 -17.39421 -17.06046 -16.87278 -15.64201 -15.44958 -14.91627 -14.71520 -14.56323 -14.00394 -13.88787 -13.35742 -13.05840 -12.98151 -12.62580 -12.31636 -12.21530 -12.05136 -11.86316 -11.61998 -11.51464 -11.40327 -11.30198 -11.13821 -10.85317 -10.84144 -10.68393 -10.49805 -10.46255 -10.06861 -9.85522 -9.80936 -9.30402 -9.05663 -8.63201 -7.28077 -6.11764 -4.09849 1.36445 2.45459 2.64343 3.24722 3.31849 3.33663 3.94001 4.35520 4.49189 4.72070 4.76388 4.81152 5.05106 5.15817 5.18321 5.21993 5.25694 5.32878 5.44242 5.51059 5.64932 5.73793 5.75789 5.78917 5.86835 5.88443 5.91712 5.98778 6.07916 6.14361 6.29226 6.31219 6.43949 6.55304 6.65639 6.72065 6.90186 6.96337 7.02216 7.42484 7.74898 7.89764 8.53667 8.57678 8.92962 9.47980 10.99994 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.005165 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.440400 B = 5419.895767 C = 5905.159293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 C 0.137 3.863 4 N -0.291 5.291 5 N -0.283 5.283 6 C 0.192 3.808 7 C 0.111 3.889 8 N -0.514 5.514 9 C 0.119 3.881 10 C -0.513 4.513 11 H 0.085 0.915 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.871 3.129 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.060 3.940 19 C -0.095 4.095 20 C -0.168 4.168 21 C -0.133 4.133 22 C -0.155 4.155 23 O -0.211 6.211 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -10.595 0.390 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 C -0.074 4.074 4 N -0.138 5.138 5 N -0.130 5.130 6 C -0.019 4.019 7 C -0.018 4.018 8 N -0.238 5.238 9 C -0.006 4.006 10 C -0.551 4.551 11 H 0.102 0.898 12 C -0.129 4.129 13 N -0.535 5.535 14 Si 0.699 3.301 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.068 4.068 19 C -0.097 4.097 20 C -0.224 4.224 21 C -0.190 4.190 22 C -0.211 4.211 23 O -0.091 6.091 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.125 0.875 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.891 -10.169 2.013 18.144 hybrid contribution -0.694 0.684 -1.901 2.137 sum -15.585 -9.485 0.111 18.245 Atomic orbital electron populations 1.21785 0.93011 1.02989 1.03013 1.20057 0.96844 0.83959 1.05382 1.27985 1.00437 0.98170 0.80811 1.74330 1.14634 0.98756 1.26046 1.74395 1.16422 1.12590 1.09552 1.28115 0.95921 0.86458 0.91410 1.21405 0.93597 0.89569 0.97239 1.62215 1.08115 1.05909 1.47535 1.21307 0.97776 0.86737 0.94778 1.21059 0.95551 0.98287 1.40167 0.89754 1.24855 0.94568 0.98440 0.95032 1.69875 1.09654 1.31937 1.42060 0.86924 0.80142 0.85059 0.78022 1.20090 1.21310 1.19066 1.22514 1.02087 0.91856 0.90333 1.21163 0.95473 0.95817 0.97200 1.22896 1.03750 0.95849 0.99882 1.21785 1.00995 0.99289 0.96977 1.22639 0.97067 1.00999 1.00401 1.85257 1.63869 1.23398 1.36532 0.90790 0.92126 0.91713 0.87525 0.88764 0.88857 0.87436 0.94018 0.95886 0.92561 0.87288 0.93473 0.88529 0.94375 0.91502 0.93426 0.93553 0.91587 0.92398 0.93378 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.02 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.14 1.91 7.73 -12.94 -0.10 1.81 16 4 N -0.29 -4.98 12.22 32.55 0.40 -4.58 16 5 N -0.28 -5.33 12.22 32.55 0.40 -4.93 16 6 C 0.19 3.26 6.54 -12.94 -0.08 3.18 16 7 C 0.11 1.86 4.50 -4.97 -0.02 1.83 16 8 N -0.51 -10.25 4.84 -237.52 -1.15 -11.41 16 9 C 0.12 2.62 3.24 -4.97 -0.02 2.61 16 10 C -0.51 -13.39 8.10 -34.44 -0.28 -13.67 16 11 H 0.08 2.40 5.85 -52.49 -0.31 2.09 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -26.19 13.96 55.43 0.77 -25.42 16 14 Si 0.87 20.38 27.38 -169.99 -4.65 15.72 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.27 -5.81 6.68 56.52 0.38 -5.43 16 18 C 0.06 1.13 4.57 -3.82 -0.02 1.11 16 19 C -0.09 -1.51 0.77 -154.51 -0.12 -1.63 16 20 C -0.17 -2.82 6.19 37.16 0.23 -2.59 16 21 C -0.13 -1.99 8.27 37.16 0.31 -1.69 16 22 C -0.15 -2.12 6.57 37.16 0.24 -1.88 16 23 O -0.21 -3.15 6.01 5.38 0.03 -3.12 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.42 2.50 -51.93 -0.13 1.29 16 30 H 0.11 1.72 8.08 -51.93 -0.42 1.30 16 31 H 0.04 0.89 2.65 -58.74 -0.16 0.73 16 32 H 0.02 0.53 7.31 -51.93 -0.38 0.15 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.11 2.35 4.99 -51.93 -0.26 2.10 16 35 H 0.05 0.87 6.78 -51.93 -0.35 0.52 16 36 H 0.10 1.93 5.72 -51.93 -0.30 1.63 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.10 3.32 -51.93 -0.17 0.93 16 39 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 42 H 0.06 0.80 4.09 -51.93 -0.21 0.58 16 43 H 0.05 0.60 8.01 -51.93 -0.42 0.18 16 44 H 0.06 0.90 5.47 -51.93 -0.28 0.62 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.35 322.26 -5.46 -35.81 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.35 Total: 3.17 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 0.23 Total: -10.11 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.42 Total: -46.33 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.03 Total: -3.12 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.65 Total: 15.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.35 -5.46 -35.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.771 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds