Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.47115 * 2 1 4 4 N 1.30272 * 126.27751 * 90.02345 * 3 2 1 5 5 N 1.28670 * 109.37904 * 179.97438 * 4 3 2 6 6 C 1.30279 * 109.37994 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.28147 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46690 * 90.02874 * 7 6 5 9 9 C 1.46904 * 110.99808 * 189.53222 * 8 7 6 10 10 C 1.50700 * 109.46929 * 189.30304 * 9 8 7 11 11 H 1.08000 * 120.00059 * 4.79178 * 10 9 8 12 12 C 1.37874 * 119.99985 * 184.79787 * 10 9 8 13 13 N 1.31512 * 120.00337 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00006 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47435 * 89.99875 * 14 12 10 16 16 H 1.48503 * 109.47090 * 210.00195 * 14 12 10 17 17 H 1.48501 * 109.46806 * 329.99778 * 14 12 10 18 18 C 1.46905 * 111.00145 * 65.57760 * 8 7 6 19 19 C 1.52995 * 109.47016 * 51.29911 * 18 8 7 20 20 C 1.53002 * 109.47131 * 35.43579 * 19 18 8 21 21 C 1.52995 * 109.47329 * 155.43588 * 19 18 8 22 22 C 1.53006 * 109.47024 * 275.43543 * 19 18 8 23 23 O 1.34361 * 107.43718 * 359.76248 * 6 5 4 24 24 H 1.08997 * 109.47013 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47124 * 60.00003 * 1 2 3 26 26 H 1.08998 * 109.47090 * 300.00174 * 1 2 3 27 27 H 1.08993 * 109.47508 * 119.99806 * 2 1 3 28 28 H 1.09000 * 109.47507 * 240.00463 * 2 1 3 29 29 H 1.09003 * 109.47398 * 210.02213 * 7 6 5 30 30 H 1.08997 * 109.47321 * 330.03101 * 7 6 5 31 31 H 1.08995 * 109.46774 * 309.29961 * 9 8 7 32 32 H 1.08992 * 109.47112 * 69.30022 * 9 8 7 33 33 H 0.96996 * 120.00480 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.46654 * 171.30072 * 18 8 7 35 35 H 1.08999 * 109.47029 * 291.29535 * 18 8 7 36 36 H 1.08991 * 109.47075 * 59.26855 * 20 19 18 37 37 H 1.09006 * 109.46990 * 179.26502 * 20 19 18 38 38 H 1.08993 * 109.47211 * 299.26271 * 20 19 18 39 39 H 1.09008 * 109.46848 * 59.99679 * 21 19 18 40 40 H 1.08998 * 109.47511 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.47346 * 300.00140 * 21 19 18 42 42 H 1.08997 * 109.46915 * 77.65065 * 22 19 18 43 43 H 1.09004 * 109.46916 * 197.64426 * 22 19 18 44 44 H 1.08999 * 109.47014 * 317.64439 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2897 2.1475 1.0502 5 7 2.7005 3.3081 0.6762 6 6 2.7196 3.3611 -0.6254 7 6 3.1370 4.5418 -1.4637 8 7 4.5784 4.4636 -1.7362 9 6 5.0654 5.7041 -2.3545 10 6 6.4831 5.5073 -2.8262 11 1 6.9469 4.5349 -2.7517 12 6 7.1880 6.5688 -3.3527 13 7 8.4254 6.3974 -3.7639 14 14 6.3855 8.2507 -3.4820 15 1 6.6424 9.0189 -2.2374 16 1 6.9545 8.9828 -4.6420 17 1 4.9215 8.0875 -3.6696 18 6 4.8934 3.2988 -2.5742 19 6 3.9883 3.2983 -3.8077 20 6 3.7404 4.7391 -4.2590 21 6 4.6658 2.5196 -4.9371 22 6 2.6535 2.6358 -3.4606 23 8 2.3034 2.1684 -1.0831 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 2.5882 4.5310 -2.4054 30 1 2.9184 5.4645 -0.9262 31 1 4.4320 5.9595 -3.2039 32 1 5.0346 6.5112 -1.6227 33 1 8.9212 7.1440 -4.1346 34 1 5.9359 3.3487 -2.8884 35 1 4.7295 2.3852 -2.0028 36 1 4.6924 5.2151 -4.4938 37 1 3.1063 4.7381 -5.1456 38 1 3.2460 5.2904 -3.4592 39 1 4.8424 1.4931 -4.6155 40 1 4.0208 2.5188 -5.8157 41 1 5.6167 2.9915 -5.1844 42 1 2.0349 3.3367 -2.9002 43 1 2.1395 2.3513 -4.3788 44 1 2.8353 1.7474 -2.8558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109813883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = 72.333548 kcal Electronic energy + Delta-G solvation = -23999.483335 eV Core-core repulsion = 20762.671405 eV Total energy + Delta-G solvation = -3236.811930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.24199 -41.17125 -37.19327 -35.64128 -35.38841 -34.45310 -32.25863 -30.09844 -29.33374 -28.00540 -27.56087 -26.04386 -25.35251 -23.45480 -22.75280 -21.93370 -20.06370 -19.03904 -18.45757 -18.15674 -16.95564 -16.86785 -16.30651 -16.07135 -15.76776 -15.53280 -14.99137 -14.76115 -14.46856 -14.26374 -13.70842 -13.63685 -13.31979 -13.22486 -13.10789 -12.86373 -12.82031 -12.64902 -12.59348 -12.46961 -12.33961 -12.20860 -12.05159 -11.98375 -11.77023 -11.64138 -11.39872 -11.29300 -10.95325 -10.70685 -10.51898 -8.80954 -8.21554 -6.23299 0.17998 1.29420 1.39051 1.40832 1.41087 1.49624 2.38732 2.84097 3.10661 3.28835 3.42974 3.80630 3.89312 3.92883 4.00573 4.18010 4.20395 4.29370 4.38191 4.45779 4.48667 4.58559 4.63071 4.77053 4.80518 4.84350 4.85870 4.88908 4.94938 5.03678 5.04259 5.09068 5.13730 5.20115 5.29483 5.33226 5.38362 5.47900 5.57080 5.63414 5.95019 6.24214 6.60948 6.81566 7.34228 7.37808 8.93397 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.005165 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.440400 B = 5419.895767 C = 5905.159293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C 0.157 3.843 4 N -0.329 5.329 5 N -0.316 5.316 6 C 0.187 3.813 7 C 0.115 3.885 8 N -0.535 5.535 9 C 0.127 3.873 10 C -0.507 4.507 11 H 0.046 0.954 12 C 0.015 3.985 13 N -0.949 5.949 14 Si 0.934 3.066 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.236 1.236 18 C 0.068 3.932 19 C -0.091 4.091 20 C -0.167 4.167 21 C -0.129 4.129 22 C -0.145 4.145 23 O -0.207 6.207 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.811 -11.471 -0.296 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.055 4.055 4 N -0.174 5.174 5 N -0.162 5.162 6 C -0.026 4.026 7 C -0.014 4.014 8 N -0.260 5.260 9 C 0.002 3.998 10 C -0.545 4.545 11 H 0.064 0.936 12 C -0.183 4.183 13 N -0.590 5.590 14 Si 0.758 3.242 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.159 1.159 18 C -0.060 4.060 19 C -0.093 4.093 20 C -0.223 4.223 21 C -0.187 4.187 22 C -0.201 4.201 23 O -0.086 6.086 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.293 -11.067 1.349 21.422 hybrid contribution 0.367 0.758 -1.641 1.845 sum -17.926 -10.308 -0.292 20.681 Atomic orbital electron populations 1.21780 0.91471 1.04699 1.02334 1.20491 0.97942 0.80788 1.07226 1.29087 0.97427 0.99207 0.79759 1.74275 1.16805 0.98901 1.27452 1.74322 1.17326 1.13902 1.10630 1.27950 0.96469 0.87136 0.91004 1.21428 0.91521 0.90110 0.98306 1.62032 1.10783 1.05196 1.47949 1.21164 0.95707 0.87696 0.95233 1.21282 0.97470 0.96658 1.39070 0.93597 1.25692 0.94985 1.02654 0.94930 1.70035 1.11634 1.33163 1.44137 0.85912 0.80841 0.79768 0.77682 1.20178 1.21367 1.15887 1.22325 1.00612 0.91413 0.91638 1.21101 0.96298 0.96009 0.95854 1.22785 1.02343 0.95944 1.01251 1.21741 0.99893 0.99390 0.97632 1.22513 0.95342 1.00692 1.01573 1.85267 1.63820 1.22819 1.36693 0.87886 0.92295 0.92911 0.86191 0.86369 0.86671 0.86785 0.91839 0.96435 0.92698 0.91259 0.93473 0.92095 0.91647 0.91042 0.92358 0.91201 0.94636 0.92171 0.91008 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.03 -0.37 6.56 29.85 0.20 -0.17 16 3 C 0.16 4.03 7.73 88.34 0.68 4.71 16 4 N -0.33 -10.97 12.22 -165.49 -2.02 -12.99 16 5 N -0.32 -11.73 12.22 -165.50 -2.02 -13.75 16 6 C 0.19 6.10 6.54 88.34 0.58 6.68 16 7 C 0.11 3.66 4.50 85.56 0.38 4.05 16 8 N -0.54 -21.34 4.84 -905.37 -4.39 -25.73 16 9 C 0.13 5.61 3.24 85.56 0.28 5.88 16 10 C -0.51 -27.46 8.10 25.60 0.21 -27.25 16 11 H 0.05 2.80 5.85 -2.91 -0.02 2.78 16 12 C 0.01 0.82 5.47 84.65 0.46 1.28 16 13 N -0.95 -57.78 13.96 21.45 0.30 -57.48 16 14 Si 0.93 42.10 27.38 68.60 1.88 43.98 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.24 -9.39 6.68 99.48 0.66 -8.72 16 18 C 0.07 2.58 4.57 86.30 0.39 2.98 16 19 C -0.09 -2.75 0.77 -52.18 -0.04 -2.79 16 20 C -0.17 -5.26 6.19 71.98 0.45 -4.81 16 21 C -0.13 -3.71 8.27 71.98 0.60 -3.11 16 22 C -0.14 -3.46 6.57 71.98 0.47 -2.99 16 23 O -0.21 -5.70 6.01 -3.67 -0.02 -5.72 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.12 3.17 2.50 -2.39 -0.01 3.16 16 30 H 0.11 3.48 8.08 -2.39 -0.02 3.46 16 31 H 0.06 2.58 2.65 -8.78 -0.02 2.56 16 32 H 0.02 0.80 7.31 -2.39 -0.02 0.78 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.07 3.18 4.99 -2.39 -0.01 3.17 16 35 H 0.05 1.75 6.78 -2.39 -0.02 1.73 16 36 H 0.06 2.39 5.72 -2.39 -0.01 2.38 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.07 2.16 3.32 -2.39 -0.01 2.15 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.03 1.22 8.12 -2.39 -0.02 1.20 16 42 H 0.06 1.42 4.09 -2.39 -0.01 1.42 16 43 H 0.07 1.42 8.01 -2.38 -0.02 1.40 16 44 H 0.07 1.59 5.47 -2.39 -0.01 1.58 16 Total: -1.00 -69.35 322.26 0.05 -69.29 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.96 Total: 18.81 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.37 Total: -16.40 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -8.13 Total: -109.96 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.02 Total: -5.72 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Total: -69.35 0.05 -69.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.628 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds