Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48493 * 109.47192 * 239.99823 * 3 2 1 5 5 H 1.48499 * 109.47509 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46789 * 120.00187 * 3 2 1 7 7 C 1.38813 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 191.47163 * 7 2 1 9 9 N 1.36941 * 119.99700 * 11.46945 * 7 2 1 10 10 C 1.46929 * 120.62914 * 216.67102 * 9 7 2 11 11 C 1.53187 * 108.77573 * 233.63492 * 10 9 7 12 12 C 1.53043 * 109.31479 * 305.36502 * 11 10 9 13 13 N 1.46495 * 109.45919 * 181.38651 * 12 11 10 14 14 C 1.34775 * 119.99746 * 155.00489 * 13 12 11 15 15 O 1.21582 * 120.00350 * 355.24778 * 14 13 12 16 16 N 1.34785 * 119.99888 * 175.52846 * 14 13 12 17 17 C 1.46922 * 120.63091 * 184.55076 * 16 14 13 18 18 C 1.53625 * 108.54313 * 126.36827 * 17 16 14 19 19 C 1.53037 * 109.24048 * 54.85903 * 18 17 16 20 20 C 1.53046 * 109.53695 * 298.51378 * 19 18 17 21 21 C 1.46922 * 120.62895 * 4.83388 * 16 14 13 22 22 C 1.53044 * 109.53557 * 61.36975 * 12 11 10 23 23 C 1.46925 * 120.63072 * 36.70387 * 9 7 2 24 24 H 0.96995 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.58252 * 113.84736 * 10 9 7 26 26 H 1.09004 * 109.70279 * 353.49461 * 10 9 7 27 27 H 1.08999 * 109.49771 * 185.41291 * 11 10 9 28 28 H 1.09002 * 109.52492 * 65.33620 * 11 10 9 29 29 H 1.08996 * 109.45801 * 301.36028 * 12 11 10 30 30 H 0.97000 * 120.00274 * 334.99709 * 13 12 11 31 31 H 1.09004 * 109.58943 * 246.20264 * 17 16 14 32 32 H 1.09003 * 109.58637 * 6.63198 * 17 16 14 33 33 H 1.08999 * 109.63746 * 294.86755 * 18 17 16 34 34 H 1.09001 * 109.42960 * 174.72489 * 18 17 16 35 35 H 1.08999 * 109.46079 * 178.49208 * 19 18 17 36 36 H 1.08996 * 109.46180 * 58.52861 * 19 18 17 37 37 H 1.09004 * 109.49439 * 301.40714 * 20 19 18 38 38 H 1.09001 * 109.49615 * 181.31645 * 20 19 18 39 39 H 1.08998 * 109.59352 * 353.37385 * 21 16 14 40 40 H 1.09000 * 109.58853 * 113.79840 * 21 16 14 41 41 H 1.08999 * 109.50047 * 58.58051 * 22 12 11 42 42 H 1.08999 * 109.49819 * 178.68500 * 22 12 11 43 43 H 1.09005 * 109.58313 * 246.15187 * 23 9 7 44 44 H 1.09000 * 109.58829 * 6.57464 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0741 -1.2116 0.1855 9 7 1.3461 -2.3761 -0.2369 10 6 1.7223 -3.6054 0.4744 11 6 1.9927 -4.7075 -0.5547 12 6 0.7737 -4.8577 -1.4676 13 7 1.0159 -5.9334 -2.4321 14 6 -0.0236 -6.5897 -2.9846 15 8 -1.1580 -6.3491 -2.6192 16 7 0.1949 -7.5170 -3.9381 17 6 -0.9312 -8.1692 -4.6200 18 6 -0.7439 -8.0080 -6.1362 19 6 0.6308 -8.5496 -6.5350 20 6 1.7231 -7.7450 -5.8266 21 6 1.5637 -7.8991 -4.3109 22 6 0.5311 -3.5457 -2.2174 23 6 0.2441 -2.4305 -1.2071 24 1 -0.4850 0.8400 0.0004 25 1 0.9082 -3.9110 1.1317 26 1 2.6214 -3.4280 1.0647 27 1 2.1791 -5.6493 -0.0387 28 1 2.8645 -4.4416 -1.1526 29 1 -0.1027 -5.0995 -0.8663 30 1 1.9243 -6.1732 -2.6733 31 1 -0.9509 -9.2281 -4.3620 32 1 -1.8657 -7.6989 -4.3139 33 1 -0.8108 -6.9534 -6.4035 34 1 -1.5205 -8.5663 -6.6590 35 1 0.7568 -8.4615 -7.6140 36 1 0.7062 -9.5977 -6.2451 37 1 1.6329 -6.6928 -6.0969 38 1 2.7023 -8.1161 -6.1291 39 1 2.2760 -7.2507 -3.8008 40 1 1.7433 -8.9364 -4.0283 41 1 1.4165 -3.2902 -2.7995 42 1 -0.3230 -3.6607 -2.8848 43 1 -0.6907 -2.6402 -0.6870 44 1 0.1685 -1.4760 -1.7281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113413404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -15.607234 kcal Electronic energy + Delta-G solvation = -22997.703732 eV Core-core repulsion = 19757.078404 eV Total energy + Delta-G solvation = -3240.625328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35824 -38.06115 -36.89806 -34.41406 -33.04584 -31.94977 -31.12471 -29.93870 -29.27726 -25.68169 -24.63394 -23.40668 -22.18334 -22.00139 -20.86558 -19.67523 -19.13496 -18.02987 -16.68367 -16.18187 -15.34276 -14.97656 -14.77406 -14.55365 -14.50910 -13.95660 -13.82769 -13.49741 -13.34654 -13.25276 -12.94692 -12.55237 -12.45520 -12.29148 -11.54733 -11.40665 -11.21768 -11.07216 -10.98016 -10.83172 -10.78105 -10.73188 -10.33700 -10.20112 -10.06215 -9.87630 -9.74047 -9.51399 -8.80878 -8.49101 -8.32998 -6.51692 -5.76145 -3.29008 2.74577 3.39357 3.40722 3.44830 3.45668 3.99263 4.50662 4.51392 4.59719 4.63588 4.86039 5.05023 5.20304 5.25973 5.36505 5.44227 5.49763 5.50824 5.56523 5.62875 5.67301 5.71580 5.80402 5.85883 5.89994 6.08432 6.14806 6.30167 6.38992 6.48196 6.51261 6.66552 6.71786 6.83440 6.95815 7.01752 7.14214 7.40063 7.68463 7.83066 8.13824 8.53832 8.81557 9.25441 9.85443 10.48086 11.32023 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.003587 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.570068 B = 7803.636967 C = 7850.873253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.011 3.989 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.061 0.939 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.167 3.833 13 N -0.740 5.740 14 C 0.706 3.294 15 O -0.588 6.588 16 N -0.635 5.635 17 C 0.130 3.870 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.136 4.136 21 C 0.113 3.887 22 C -0.146 4.146 23 C 0.179 3.821 24 H 0.255 0.745 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.389 0.611 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.023 0.977 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -18.116 -11.643 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.189 4.189 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.063 3.937 13 N -0.396 5.396 14 C 0.407 3.593 15 O -0.466 6.466 16 N -0.374 5.374 17 C 0.006 3.994 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.175 4.175 21 C -0.011 4.011 22 C -0.187 4.187 23 C 0.053 3.947 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.224 0.776 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.708 -17.743 -11.333 21.227 hybrid contribution 0.947 0.726 -0.269 1.223 sum 3.655 -17.017 -11.601 20.917 Atomic orbital electron populations 1.69992 1.05365 1.25740 1.52991 1.25308 0.95319 0.98561 0.99671 0.86386 0.78922 0.83318 0.78138 1.20928 1.21597 1.20773 1.19044 0.90764 0.83982 1.45407 0.92167 1.43978 1.39041 1.04897 1.43439 1.20851 0.98174 0.86705 0.92051 1.22342 0.97025 0.99687 0.98764 1.20907 0.98877 0.85180 0.88734 1.45699 1.07486 1.38710 1.47692 1.15912 0.85183 0.78798 0.79378 1.90909 1.21386 1.69377 1.64957 1.47293 1.06728 1.42938 1.40393 1.21495 0.90203 0.96835 0.90834 1.22021 0.97372 1.02091 0.95975 1.21492 0.94623 0.99450 0.99993 1.21931 0.99149 1.01431 0.94969 1.21578 0.83528 1.00468 0.95528 1.22580 1.00440 0.96026 0.99620 1.20658 0.89705 0.95600 0.88779 0.93481 0.96186 0.92366 0.92730 0.92063 0.89981 0.77582 0.92082 0.88862 0.91420 0.90886 0.91821 0.91868 0.91296 0.90843 0.90467 0.91558 0.92873 0.93027 0.95919 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.52 55.49 0.64 -25.92 16 2 C 0.01 0.32 5.00 -17.43 -0.09 0.23 16 3 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.26 -7.24 9.51 -15.06 -0.14 -7.39 16 8 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 9 N -0.59 -15.02 2.95 -172.31 -0.51 -15.53 16 10 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 11 C -0.14 -2.37 5.55 -26.61 -0.15 -2.52 16 12 C 0.17 3.05 2.45 -67.89 -0.17 2.88 16 13 N -0.74 -11.24 4.99 -58.64 -0.29 -11.53 16 14 C 0.71 11.56 8.26 -86.91 -0.72 10.84 16 15 O -0.59 -12.17 15.41 5.29 0.08 -12.09 16 16 N -0.63 -7.79 2.97 -178.24 -0.53 -8.32 16 17 C 0.13 1.40 6.45 -3.49 -0.02 1.37 16 18 C -0.14 -1.16 6.10 -26.39 -0.16 -1.32 16 19 C -0.12 -0.83 5.88 -26.69 -0.16 -0.99 16 20 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 21 C 0.11 0.98 6.43 -3.72 -0.02 0.96 16 22 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 23 C 0.18 4.44 5.23 -3.71 -0.02 4.42 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.71 7.51 -51.93 -0.39 1.32 16 30 H 0.39 4.75 6.06 -40.82 -0.25 4.51 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.63 5.56 -51.93 -0.29 0.34 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 2.12 6.56 -51.93 -0.34 1.78 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -32.55 338.65 -10.02 -42.57 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.51 Total: 1.70 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.98 Total: 7.28 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.69 Total: -61.30 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.55 -10.02 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113413404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds