Wall clock time and date at job start Tue Mar 31 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48493 * 109.47192 * 239.99823 * 3 2 1 5 5 H 1.48499 * 109.47509 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46789 * 120.00187 * 3 2 1 7 7 C 1.38813 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 191.47163 * 7 2 1 9 9 N 1.36941 * 119.99700 * 11.46945 * 7 2 1 10 10 C 1.46929 * 120.62914 * 216.67102 * 9 7 2 11 11 C 1.53187 * 108.77573 * 233.63492 * 10 9 7 12 12 C 1.53043 * 109.31479 * 305.36502 * 11 10 9 13 13 N 1.46495 * 109.45919 * 181.38651 * 12 11 10 14 14 C 1.34775 * 119.99746 * 155.00489 * 13 12 11 15 15 O 1.21582 * 120.00350 * 355.24778 * 14 13 12 16 16 N 1.34785 * 119.99888 * 175.52846 * 14 13 12 17 17 C 1.46922 * 120.63091 * 184.55076 * 16 14 13 18 18 C 1.53625 * 108.54313 * 126.36827 * 17 16 14 19 19 C 1.53037 * 109.24048 * 54.85903 * 18 17 16 20 20 C 1.53046 * 109.53695 * 298.51378 * 19 18 17 21 21 C 1.46922 * 120.62895 * 4.83388 * 16 14 13 22 22 C 1.53044 * 109.53557 * 61.36975 * 12 11 10 23 23 C 1.46925 * 120.63072 * 36.70387 * 9 7 2 24 24 H 0.96995 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.58252 * 113.84736 * 10 9 7 26 26 H 1.09004 * 109.70279 * 353.49461 * 10 9 7 27 27 H 1.08999 * 109.49771 * 185.41291 * 11 10 9 28 28 H 1.09002 * 109.52492 * 65.33620 * 11 10 9 29 29 H 1.08996 * 109.45801 * 301.36028 * 12 11 10 30 30 H 0.97000 * 120.00274 * 334.99709 * 13 12 11 31 31 H 1.09004 * 109.58943 * 246.20264 * 17 16 14 32 32 H 1.09003 * 109.58637 * 6.63198 * 17 16 14 33 33 H 1.08999 * 109.63746 * 294.86755 * 18 17 16 34 34 H 1.09001 * 109.42960 * 174.72489 * 18 17 16 35 35 H 1.08999 * 109.46079 * 178.49208 * 19 18 17 36 36 H 1.08996 * 109.46180 * 58.52861 * 19 18 17 37 37 H 1.09004 * 109.49439 * 301.40714 * 20 19 18 38 38 H 1.09001 * 109.49615 * 181.31645 * 20 19 18 39 39 H 1.08998 * 109.59352 * 353.37385 * 21 16 14 40 40 H 1.09000 * 109.58853 * 113.79840 * 21 16 14 41 41 H 1.08999 * 109.50047 * 58.58051 * 22 12 11 42 42 H 1.08999 * 109.49819 * 178.68500 * 22 12 11 43 43 H 1.09005 * 109.58313 * 246.15187 * 23 9 7 44 44 H 1.09000 * 109.58829 * 6.57464 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0741 -1.2116 0.1855 9 7 1.3461 -2.3761 -0.2369 10 6 1.7223 -3.6054 0.4744 11 6 1.9927 -4.7075 -0.5547 12 6 0.7737 -4.8577 -1.4676 13 7 1.0159 -5.9334 -2.4321 14 6 -0.0236 -6.5897 -2.9846 15 8 -1.1580 -6.3491 -2.6192 16 7 0.1949 -7.5170 -3.9381 17 6 -0.9312 -8.1692 -4.6200 18 6 -0.7439 -8.0080 -6.1362 19 6 0.6308 -8.5496 -6.5350 20 6 1.7231 -7.7450 -5.8266 21 6 1.5637 -7.8991 -4.3109 22 6 0.5311 -3.5457 -2.2174 23 6 0.2441 -2.4305 -1.2071 24 1 -0.4850 0.8400 0.0004 25 1 0.9082 -3.9110 1.1317 26 1 2.6214 -3.4280 1.0647 27 1 2.1791 -5.6493 -0.0387 28 1 2.8645 -4.4416 -1.1526 29 1 -0.1027 -5.0995 -0.8663 30 1 1.9243 -6.1732 -2.6733 31 1 -0.9509 -9.2281 -4.3620 32 1 -1.8657 -7.6989 -4.3139 33 1 -0.8108 -6.9534 -6.4035 34 1 -1.5205 -8.5663 -6.6590 35 1 0.7568 -8.4615 -7.6140 36 1 0.7062 -9.5977 -6.2451 37 1 1.6329 -6.6928 -6.0969 38 1 2.7023 -8.1161 -6.1291 39 1 2.2760 -7.2507 -3.8008 40 1 1.7433 -8.9364 -4.0283 41 1 1.4165 -3.2902 -2.7995 42 1 -0.3230 -3.6607 -2.8848 43 1 -0.6907 -2.6402 -0.6870 44 1 0.1685 -1.4760 -1.7281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113413404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:31 Heat of formation + Delta-G solvation = -36.277552 kcal Electronic energy + Delta-G solvation = -22998.600064 eV Core-core repulsion = 19757.078404 eV Total energy + Delta-G solvation = -3241.521660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52918 -39.41689 -38.20320 -36.04319 -34.31096 -33.41825 -32.05654 -31.67443 -30.92885 -27.13669 -26.00749 -24.26047 -23.90607 -23.53315 -21.88905 -21.21195 -20.32369 -19.24054 -18.56433 -17.46352 -16.83235 -16.45999 -16.00069 -15.55293 -15.44869 -15.36524 -15.34818 -14.83923 -14.68951 -14.50582 -14.30363 -13.96692 -13.88977 -13.32593 -13.14326 -12.96780 -12.67414 -12.59300 -12.25345 -12.12624 -12.05965 -11.91996 -11.83157 -11.59194 -11.56578 -11.46292 -11.38148 -11.09246 -10.58274 -10.13767 -9.45311 -8.59200 -7.87698 -5.45038 1.47565 1.50006 1.57013 1.63820 2.14410 2.50837 2.93258 3.29318 3.66943 3.84637 3.86264 3.96274 4.00661 4.09234 4.15581 4.33243 4.37654 4.46916 4.50148 4.61181 4.66519 4.79760 4.80714 4.85793 4.93578 4.95577 5.01513 5.07249 5.09425 5.13750 5.16973 5.24864 5.31451 5.40373 5.46848 5.58393 5.62117 5.65322 5.65972 5.97075 6.42934 6.99597 7.14826 7.58138 7.81716 8.40247 9.18667 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.003587 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.570068 B = 7803.636967 C = 7850.873253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.271 4.271 8 H 0.070 0.930 9 N -0.608 5.608 10 C 0.143 3.857 11 C -0.120 4.120 12 C 0.179 3.821 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.629 5.629 17 C 0.124 3.876 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.134 4.134 21 C 0.105 3.895 22 C -0.129 4.129 23 C 0.190 3.810 24 H 0.250 0.750 25 H 0.009 0.991 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.407 0.593 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.040 0.960 43 H -0.011 1.011 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -20.224 -12.839 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.402 4.402 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.017 3.983 11 C -0.159 4.159 12 C 0.073 3.927 13 N -0.383 5.383 14 C 0.399 3.601 15 O -0.522 6.522 16 N -0.366 5.366 17 C 0.001 3.999 18 C -0.169 4.169 19 C -0.152 4.152 20 C -0.172 4.172 21 C -0.017 4.017 22 C -0.169 4.169 23 C 0.063 3.937 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.246 0.754 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.007 0.993 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.639 -19.920 -12.567 24.218 hybrid contribution 0.027 1.297 0.094 1.301 sum 5.667 -18.623 -12.473 23.119 Atomic orbital electron populations 1.70175 1.07093 1.26110 1.54740 1.26142 0.96049 1.02112 0.99881 0.85296 0.77509 0.78713 0.78604 1.20004 1.22276 1.19638 1.19462 0.91388 0.84966 1.44335 0.91255 1.44221 1.38747 1.05929 1.44240 1.21036 0.98068 0.86186 0.93023 1.22130 0.96468 0.99672 0.97643 1.20511 0.98618 0.84671 0.88863 1.45292 1.08357 1.37663 1.47025 1.16150 0.84450 0.79460 0.79993 1.90879 1.23481 1.71096 1.66756 1.47396 1.08885 1.41466 1.38845 1.21647 0.88599 0.97392 0.92258 1.21985 0.99427 1.01284 0.94206 1.21502 0.93021 1.00050 1.00676 1.21931 1.00701 1.00644 0.93907 1.21912 0.81256 1.01887 0.96610 1.22316 1.00197 0.96036 0.98355 1.20349 0.88711 0.95455 0.89192 0.94086 0.97296 0.91285 0.89190 0.90565 0.92842 0.75355 0.89929 0.91928 0.93498 0.89098 0.90671 0.90272 0.93058 0.88277 0.89768 0.89212 0.92001 0.94143 0.99252 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 11.52 21.65 0.25 -57.20 16 2 C -0.05 -2.60 5.00 84.86 0.42 -2.17 16 3 Si 0.97 45.10 29.57 68.60 2.03 47.13 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.27 -15.04 9.51 84.03 0.80 -14.24 16 8 H 0.07 3.66 7.85 -2.91 -0.02 3.64 16 9 N -0.61 -31.32 2.95 -699.08 -2.06 -33.38 16 10 C 0.14 5.93 6.51 86.36 0.56 6.49 16 11 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 12 C 0.18 6.45 2.45 45.02 0.11 6.56 16 13 N -0.73 -20.95 4.99 -457.69 -2.28 -23.24 16 14 C 0.70 22.61 8.26 179.05 1.48 24.09 16 15 O -0.64 -27.39 15.41 -3.97 -0.06 -27.46 16 16 N -0.63 -14.50 2.97 -836.08 -2.48 -16.98 16 17 C 0.12 2.55 6.45 86.51 0.56 3.10 16 18 C -0.13 -2.01 6.10 30.82 0.19 -1.82 16 19 C -0.12 -1.24 5.88 30.62 0.18 -1.06 16 20 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 21 C 0.11 1.48 6.43 86.36 0.56 2.04 16 22 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 23 C 0.19 9.85 5.23 86.36 0.45 10.31 16 24 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.07 2.70 7.94 -2.38 -0.02 2.68 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 2.28 7.51 -2.39 -0.02 2.26 16 30 H 0.41 8.70 6.06 -92.71 -0.56 8.14 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.68 7.03 -2.39 -0.02 1.66 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 1.06 5.56 -2.39 -0.01 1.05 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 44 H 0.04 2.54 6.56 -2.39 -0.02 2.52 16 Total: -1.00 -74.29 338.65 1.64 -72.65 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.41 Total: 15.42 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 5.84 Total: 23.05 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.58 Total: -130.79 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.46 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.29 1.64 -72.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113413404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.373 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds