Wall clock time and date at job start Tue Mar 31 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 N 1.46499 * 109.47644 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00536 * 275.34156 * 4 3 2 6 6 H 1.08001 * 119.99597 * 37.55145 * 5 4 3 7 7 C 1.38807 * 120.00376 * 217.56021 * 5 4 3 8 8 N 1.31624 * 119.99724 * 21.50582 * 7 5 4 9 9 Si 1.86798 * 120.00255 * 201.50942 * 7 5 4 10 10 H 1.48505 * 109.47107 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47324 * 119.99874 * 9 7 5 12 12 H 1.48503 * 109.47241 * 239.99583 * 9 7 5 13 13 C 1.46504 * 119.99745 * 95.33524 * 4 3 2 14 14 C 1.50702 * 109.46997 * 270.00386 * 13 4 3 15 15 N 1.31130 * 126.55200 * 90.25491 * 14 13 4 16 16 C 1.34499 * 105.61590 * 180.12184 * 15 14 13 17 17 C 1.50703 * 126.28559 * 179.90154 * 16 15 14 18 18 C 1.52998 * 109.46987 * 269.71146 * 17 16 15 19 19 C 1.52999 * 109.46942 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47228 * 175.00216 * 19 18 17 21 21 C 1.53004 * 109.46947 * 294.99864 * 19 18 17 22 22 N 1.29943 * 107.42149 * 359.63954 * 16 15 14 23 23 O 1.21298 * 110.25267 * 0.22668 * 22 16 15 24 24 H 1.08991 * 109.46856 * 299.99580 * 1 2 3 25 25 H 1.08999 * 109.47492 * 59.99921 * 1 2 3 26 26 H 1.09003 * 109.46701 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47240 * 240.00493 * 2 1 3 28 28 H 1.08996 * 109.47225 * 120.00521 * 2 1 3 29 29 H 1.09002 * 109.47347 * 60.00313 * 3 2 1 30 30 H 1.08996 * 109.47465 * 300.00374 * 3 2 1 31 31 H 0.96996 * 119.99542 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47130 * 150.00961 * 13 4 3 33 33 H 1.08993 * 109.47065 * 29.99973 * 13 4 3 34 34 H 1.08991 * 109.47185 * 29.71351 * 17 16 15 35 35 H 1.09001 * 109.46799 * 149.71480 * 17 16 15 36 36 H 1.08998 * 109.47231 * 299.99718 * 18 17 16 37 37 H 1.08992 * 109.47276 * 60.00371 * 18 17 16 38 38 H 1.09003 * 109.47497 * 54.99821 * 19 18 17 39 39 H 1.08989 * 109.47264 * 59.99978 * 20 19 18 40 40 H 1.09008 * 109.46899 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46952 * 299.99329 * 20 19 18 42 42 H 1.08989 * 109.47408 * 299.99938 * 21 19 18 43 43 H 1.09001 * 109.47065 * 60.00380 * 21 19 18 44 44 H 1.09008 * 109.47161 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.3324 1.1816 6 1 3.8168 0.6868 1.9632 7 6 5.3614 2.0505 1.3742 8 7 5.6016 3.1243 0.6518 9 14 6.5980 1.4930 2.6585 10 1 6.0954 0.2679 3.3307 11 1 7.8968 1.1998 2.0007 12 1 6.7849 2.5684 3.6654 13 6 4.2380 1.5604 -1.2624 14 6 4.4894 0.1861 -1.8274 15 7 3.7098 -0.4753 -2.6486 16 6 4.3332 -1.6451 -2.8763 17 6 3.8383 -2.7626 -3.7581 18 6 2.9907 -3.7294 -2.9288 19 6 2.4888 -4.8642 -3.8239 20 6 1.7466 -5.8957 -2.9718 21 6 1.5389 -4.2977 -4.8812 22 7 5.4431 -1.6325 -2.2007 23 8 5.5519 -0.5894 -1.5913 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 6.4208 3.6259 0.7862 32 1 5.1903 2.0598 -1.0845 33 1 3.6491 2.1424 -1.9712 34 1 3.2329 -2.3483 -4.5642 35 1 4.6897 -3.2963 -4.1804 36 1 3.5961 -4.1437 -2.1227 37 1 2.1393 -3.1957 -2.5065 38 1 3.3366 -5.3413 -4.3155 39 1 0.8988 -5.4186 -2.4804 40 1 1.3887 -6.7039 -3.6097 41 1 2.4233 -6.2993 -2.2187 42 1 0.6911 -3.8206 -4.3897 43 1 2.0677 -3.5628 -5.4883 44 1 1.1817 -5.1061 -5.5192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118004403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:27 Heat of formation + Delta-G solvation = 51.650855 kcal Electronic energy + Delta-G solvation = -22929.252949 eV Core-core repulsion = 19691.544150 eV Total energy + Delta-G solvation = -3237.708798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.65780 -37.25870 -36.50651 -34.93278 -33.16254 -32.40799 -30.79877 -29.92949 -27.29678 -26.89462 -25.67754 -24.68474 -22.93304 -22.06325 -20.54030 -20.14269 -20.00149 -17.36609 -16.92366 -16.43233 -15.42260 -15.02390 -14.65449 -14.40836 -14.19238 -14.02812 -13.87763 -13.27489 -13.21381 -12.78814 -12.59920 -12.38541 -12.06552 -11.80567 -11.67103 -11.54553 -11.37790 -11.15883 -11.09708 -10.82340 -10.75696 -10.73050 -10.70694 -10.63255 -10.43216 -10.29772 -10.23680 -10.07839 -9.77810 -9.05754 -8.66393 -6.88690 -6.04088 -3.61460 2.00819 2.96828 3.30441 3.39919 3.43114 3.85386 4.24025 4.36850 4.67080 4.78998 4.84114 4.89046 5.15100 5.31344 5.33163 5.43873 5.50907 5.55498 5.58122 5.67794 5.71909 5.73845 5.79021 5.95547 5.96221 6.01526 6.06946 6.09255 6.22519 6.29610 6.31456 6.38820 6.45241 6.51381 6.59780 6.67819 6.78825 6.91811 7.12173 7.16687 7.67827 8.27570 8.91749 9.02376 9.54214 10.09849 10.98590 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.004921 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.293714 B = 5688.616510 C = 6312.920262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.148 3.852 4 N -0.562 5.562 5 C -0.272 4.272 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.286 1.286 13 C 0.218 3.782 14 C 0.200 3.800 15 N -0.509 5.509 16 C 0.155 3.845 17 C -0.022 4.022 18 C -0.108 4.108 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.150 4.150 22 N -0.409 5.409 23 O 0.069 5.931 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 -10.051 -8.195 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.280 5.280 5 C -0.402 4.402 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.086 3.914 14 C -0.022 4.022 15 N -0.244 5.244 16 C -0.118 4.118 17 C -0.061 4.061 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.204 4.204 21 C -0.207 4.207 22 N -0.122 5.122 23 O 0.016 5.984 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.332 -10.590 -8.402 14.928 hybrid contribution 0.731 -0.309 0.757 1.097 sum -5.601 -10.899 -7.645 14.443 Atomic orbital electron populations 1.21679 0.97083 1.00354 1.01022 1.22111 0.94127 1.00751 1.01753 1.21023 0.83788 0.93388 0.99516 1.43790 1.00109 1.82857 1.01267 1.19092 1.06284 1.21437 0.93341 0.91647 1.25214 1.00438 0.94142 0.98123 1.69948 1.25774 1.14214 1.42122 0.86285 0.81430 0.78548 0.80927 1.19882 1.20848 1.21304 1.19993 1.02426 0.81940 0.87001 1.31777 0.81143 0.99841 0.89423 1.71873 1.29815 1.04379 1.18382 1.25666 0.90033 0.95860 1.00289 1.19876 0.99739 0.90882 0.95561 1.21601 0.99657 0.95485 0.97949 1.21100 0.98343 0.95653 0.96209 1.21830 1.00442 0.98468 0.99702 1.21908 0.99528 1.00756 0.98530 1.74500 1.21405 1.04640 1.11665 1.85299 1.41196 1.19899 1.52041 0.93260 0.93264 0.93938 0.92136 0.92892 0.92928 0.94004 0.92921 0.85770 0.90359 0.89142 0.90042 0.91769 0.91216 0.91192 0.92593 0.92781 0.92725 0.92474 0.92339 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.76 6.23 -26.73 -0.17 -2.93 16 3 C 0.15 3.02 5.72 -4.05 -0.02 3.00 16 4 N -0.56 -13.22 2.42 -174.62 -0.42 -13.64 16 5 C -0.27 -7.05 9.45 -15.06 -0.14 -7.20 16 6 H 0.07 1.73 7.92 -52.49 -0.42 1.31 16 7 C 0.02 0.59 4.95 -17.43 -0.09 0.50 16 8 N -0.88 -23.41 11.48 55.49 0.64 -22.77 16 9 Si 0.90 20.86 29.60 -169.99 -5.03 15.83 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.22 4.85 5.95 -5.19 -0.03 4.82 16 14 C 0.20 4.36 7.94 -13.06 -0.10 4.25 16 15 N -0.51 -10.33 10.65 -9.87 -0.11 -10.44 16 16 C 0.15 2.92 7.47 -156.37 -1.17 1.75 16 17 C -0.02 -0.30 5.60 -27.88 -0.16 -0.46 16 18 C -0.11 -1.38 4.66 -26.73 -0.12 -1.51 16 19 C -0.09 -0.94 2.92 -90.62 -0.26 -1.20 16 20 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 21 C -0.15 -1.37 8.95 37.16 0.33 -1.04 16 22 N -0.41 -8.64 12.16 30.90 0.38 -8.26 16 23 O 0.07 1.58 11.31 18.11 0.20 1.78 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.21 7.05 -51.93 -0.37 0.85 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.04 0.80 7.83 -51.93 -0.41 0.39 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.13 3.04 5.52 -51.93 -0.29 2.75 16 33 H 0.08 1.60 7.86 -51.93 -0.41 1.20 16 34 H 0.09 1.15 6.57 -51.93 -0.34 0.81 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.53 8.14 -51.94 -0.42 0.11 16 40 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.55 8.14 -51.94 -0.42 0.12 16 43 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 44 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -27.49 359.44 -7.77 -35.25 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.62 Total: -0.35 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.22 Total: -2.82 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.49 Total: -55.11 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.20 Total: 1.78 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.49 -7.77 -35.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.906 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds