Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47473 * 180.02562 * 4 3 2 6 6 C 1.35966 * 126.07139 * 124.99719 * 5 4 3 7 7 C 1.35706 * 107.55291 * 180.02562 * 6 5 4 8 8 N 1.40796 * 126.06574 * 180.02562 * 7 6 5 9 9 C 1.46502 * 119.99787 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46999 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47220 * 299.99961 * 10 9 8 12 12 C 1.53000 * 109.47278 * 60.00020 * 10 9 8 13 13 C 1.53004 * 109.46868 * 180.02562 * 10 9 8 14 14 C 1.50705 * 109.46787 * 180.02562 * 13 10 9 15 15 H 1.07996 * 120.00163 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99707 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00141 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99731 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47030 * 90.00023 * 18 16 14 20 20 H 1.48507 * 109.47157 * 209.99768 * 18 16 14 21 21 H 1.48497 * 109.47522 * 329.99808 * 18 16 14 22 22 C 1.40222 * 107.86337 * 359.97438 * 7 6 5 23 23 N 1.30862 * 108.36160 * 359.71944 * 22 7 6 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 30 30 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 31 31 H 1.08000 * 126.22499 * 359.97153 * 6 5 4 32 32 H 0.97003 * 120.00208 * 359.97438 * 8 7 6 33 33 H 1.09002 * 109.47076 * 299.99892 * 9 8 7 34 34 H 1.08992 * 109.47239 * 59.99831 * 9 8 7 35 35 H 1.09003 * 109.47104 * 60.00005 * 11 10 9 36 36 H 1.08997 * 109.47143 * 180.02562 * 11 10 9 37 37 H 1.09009 * 109.46884 * 300.00162 * 11 10 9 38 38 H 1.09002 * 109.47073 * 59.99819 * 12 10 9 39 39 H 1.08997 * 109.47183 * 179.97438 * 12 10 9 40 40 H 1.09003 * 109.47009 * 299.99972 * 12 10 9 41 41 H 1.08996 * 109.46864 * 299.99646 * 13 10 9 42 42 H 1.08992 * 109.47316 * 59.99984 * 13 10 9 43 43 H 0.96991 * 120.00145 * 180.02562 * 17 16 14 44 44 H 1.08001 * 125.81556 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0332 2.9973 0.9002 7 6 5.3303 4.2738 0.5481 8 7 6.2250 5.1311 1.2166 9 6 6.4473 6.4907 0.7181 10 6 7.4564 7.2056 1.6191 11 6 6.9101 7.2688 3.0468 12 6 8.7795 6.4374 1.6128 13 6 7.6880 8.6257 1.0988 14 6 8.6824 9.3296 1.9859 15 1 9.1063 8.8157 2.8359 16 6 9.0500 10.6301 1.7128 17 7 8.5333 11.2561 0.6780 18 14 10.2820 11.5029 2.8128 19 1 11.6559 11.2692 2.2999 20 1 9.9964 12.9602 2.8169 21 1 10.1731 10.9732 4.1958 22 6 4.5889 4.5869 -0.6001 23 7 3.8782 3.5389 -0.9304 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.8575 0.6435 0.8891 30 1 3.8568 0.6439 -0.8908 31 1 5.4387 2.4568 1.7428 32 1 6.6943 4.8216 2.0071 33 1 6.8361 6.4456 -0.2993 34 1 5.5048 7.0380 0.7229 35 1 6.7447 6.2572 3.4177 36 1 7.6288 7.7785 3.6885 37 1 5.9674 7.8161 3.0512 38 1 9.1687 6.3924 0.5956 39 1 9.4985 6.9470 2.2543 40 1 8.6142 5.4258 1.9837 41 1 8.0770 8.5810 0.0816 42 1 6.7453 9.1727 1.1036 43 1 8.7923 12.1708 0.4857 44 1 4.6051 5.5306 -1.1250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125592932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = 23.254902 kcal Electronic energy + Delta-G solvation = -21584.228467 eV Core-core repulsion = 18345.288327 eV Total energy + Delta-G solvation = -3238.940139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95073 -38.32437 -37.56350 -34.49501 -33.10522 -32.04593 -29.89667 -28.26406 -26.95591 -26.42234 -26.39015 -25.25623 -23.60251 -22.65975 -20.95896 -20.03257 -17.94835 -17.44596 -16.58256 -16.46741 -16.28056 -15.63137 -15.27130 -14.72317 -14.56888 -14.27465 -13.99182 -13.83528 -13.52897 -12.95754 -12.76919 -12.53622 -12.28800 -12.17275 -12.01595 -11.90227 -11.69574 -11.17417 -10.98301 -10.82497 -10.67221 -10.59542 -10.30468 -10.20017 -10.10418 -9.94944 -9.57777 -9.27416 -9.14590 -8.88923 -8.34287 -6.79945 -5.98735 -3.99315 1.94129 2.34181 3.15370 3.31824 3.38756 3.40858 3.49652 4.00496 4.46083 4.48877 4.61688 4.91558 4.95707 4.96438 4.98670 5.14609 5.26174 5.35093 5.37045 5.40070 5.58530 5.70847 5.72560 5.85241 5.91794 6.26380 6.28143 6.34757 6.48972 6.54870 6.64742 6.70505 6.73499 7.08119 7.11825 7.14069 7.17842 7.66008 7.71120 7.79766 7.82556 8.00877 8.27622 8.43961 9.05613 9.63619 11.12773 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.050044 B = 0.002507 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.375554 B =11166.660485 C =11312.561011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.050 3.950 4 C 0.151 3.849 5 N -0.378 5.378 6 C -0.047 4.047 7 C 0.082 3.918 8 N -0.738 5.738 9 C 0.145 3.855 10 C -0.070 4.070 11 C -0.125 4.125 12 C -0.125 4.125 13 C 0.036 3.964 14 C -0.509 4.509 15 H 0.059 0.941 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.014 3.986 23 N -0.280 5.280 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.396 0.604 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.259 0.741 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 -20.089 0.314 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.029 3.971 5 N -0.168 5.168 6 C -0.193 4.193 7 C -0.027 4.027 8 N -0.376 5.376 9 C 0.021 3.979 10 C -0.070 4.070 11 C -0.182 4.182 12 C -0.182 4.182 13 C -0.002 4.002 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.175 4.175 23 N -0.103 5.103 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.184 0.816 32 H 0.231 0.769 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.433 -20.525 -0.699 24.007 hybrid contribution 1.242 1.124 1.421 2.197 sum -11.191 -19.401 0.722 22.409 Atomic orbital electron populations 1.22762 0.80214 1.02913 1.00349 1.87769 1.20381 1.27355 1.95606 1.22736 0.93191 0.84937 1.01905 1.21152 0.91863 0.79490 1.04614 1.47828 1.35671 1.11329 1.21992 1.21559 1.01858 0.95692 1.00203 1.17837 0.97944 0.90820 0.96144 1.44144 1.48314 1.12603 1.32516 1.21387 0.98358 0.80911 0.97249 1.20829 0.93219 0.98313 0.94645 1.21725 1.00899 0.98826 0.96734 1.21724 0.97722 0.97264 1.01482 1.19094 0.96969 0.87834 0.96285 1.21204 1.24322 0.97427 1.11794 0.92306 1.25017 0.96537 0.97690 0.95350 1.69959 1.43749 1.12151 1.27652 0.86653 0.81706 0.78901 0.81073 1.20802 1.21375 1.19969 1.23614 0.97959 0.98565 0.97322 1.77119 1.23440 0.96324 1.13392 0.93770 0.89333 0.93883 0.91688 0.92713 0.88162 0.89437 0.81623 0.76896 0.93365 0.93389 0.95121 0.91798 0.93584 0.93562 0.91808 0.95107 0.96464 0.96460 0.93097 0.80203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.59 10.70 -35.23 -0.38 -3.97 16 3 C 0.05 0.46 6.13 37.16 0.23 0.69 16 4 C 0.15 1.38 6.89 -4.04 -0.03 1.35 16 5 N -0.38 -4.62 3.71 -61.00 -0.23 -4.85 16 6 C -0.05 -0.57 11.52 -16.63 -0.19 -0.76 16 7 C 0.08 1.15 6.96 -83.90 -0.58 0.57 16 8 N -0.74 -10.68 5.20 -58.79 -0.31 -10.98 16 9 C 0.15 2.42 4.52 -4.04 -0.02 2.40 16 10 C -0.07 -1.31 0.54 -154.50 -0.08 -1.40 16 11 C -0.12 -2.23 8.05 37.16 0.30 -1.93 16 12 C -0.12 -2.23 8.05 37.16 0.30 -1.93 16 13 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.52 7.65 -34.44 -0.26 -13.79 16 15 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.01 0.21 11.34 -17.22 -0.20 0.01 16 23 N -0.28 -4.02 12.42 30.70 0.38 -3.64 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.40 5.36 6.29 -40.82 -0.26 5.10 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 36 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 37 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 40 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.18 2.38 7.90 -52.49 -0.41 1.96 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -30.40 357.30 -6.48 -36.88 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.42 Total: 1.82 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 0.37 Total: -11.28 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.59 Total: -45.06 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.38 Total: -3.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.40 -6.48 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125592932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.138 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds