Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46839 * 300.00187 * 3 2 1 6 6 H 1.48497 * 109.47076 * 59.99810 * 3 2 1 7 7 C 1.37877 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99880 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47261 * 185.06747 * 9 7 2 11 11 C 1.46896 * 111.00013 * 285.28881 * 10 9 7 12 12 C 1.53235 * 109.34238 * 187.25413 * 11 10 9 13 13 N 1.47087 * 108.51742 * 306.16977 * 12 11 10 14 14 C 1.34774 * 120.87718 * 231.18531 * 13 12 11 15 15 O 1.21278 * 120.00547 * 5.72346 * 14 13 12 16 16 C 1.50703 * 119.99532 * 185.72459 * 14 13 12 17 17 N 1.46900 * 110.05670 * 41.56038 * 16 14 13 18 18 C 1.53877 * 110.03262 * 280.14452 * 16 14 13 19 19 C 1.54269 * 106.64032 * 240.69326 * 18 16 14 20 20 C 1.54956 * 104.15968 * 336.44515 * 19 18 16 21 21 C 1.54266 * 110.03402 * 162.97865 * 16 14 13 22 22 C 1.47081 * 118.23612 * 51.45893 * 13 12 11 23 23 C 1.46899 * 111.00001 * 49.59154 * 10 9 7 24 24 H 0.96999 * 120.00736 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47598 * 65.06728 * 9 7 2 26 26 H 1.09003 * 109.47436 * 305.06578 * 9 7 2 27 27 H 1.09005 * 109.49341 * 67.28809 * 11 10 9 28 28 H 1.09003 * 109.49783 * 307.21689 * 11 10 9 29 29 H 1.09001 * 109.62862 * 186.46326 * 12 11 10 30 30 H 1.08996 * 109.79117 * 65.97308 * 12 11 10 31 31 H 1.00901 * 110.99936 * 53.59954 * 17 16 14 32 32 H 1.00905 * 110.99847 * 177.55375 * 17 16 14 33 33 H 1.09005 * 110.02812 * 0.02562 * 18 16 14 34 34 H 1.08995 * 110.03351 * 121.38280 * 18 16 14 35 35 H 1.09003 * 110.48427 * 95.08923 * 19 18 16 36 36 H 1.08995 * 110.48475 * 217.73317 * 19 18 16 37 37 H 1.09003 * 110.71987 * 279.57502 * 20 19 18 38 38 H 1.08999 * 110.92263 * 156.29719 * 20 19 18 39 39 H 1.09002 * 110.48897 * 261.57286 * 21 16 14 40 40 H 1.09004 * 110.48478 * 24.08292 * 21 16 14 41 41 H 1.08998 * 109.62437 * 68.25135 * 22 13 12 42 42 H 1.09003 * 109.62492 * 188.82965 * 22 13 12 43 43 H 1.09002 * 109.49183 * 292.70681 * 23 10 9 44 44 H 1.09004 * 109.49232 * 52.75927 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2010 -3.6131 0.1212 11 6 2.9166 -3.8351 -1.1423 12 6 3.7591 -5.1102 -1.0311 13 7 4.6170 -5.0010 0.1586 14 6 5.9441 -5.2214 0.0770 15 8 6.4620 -5.4117 -1.0030 16 6 6.7846 -5.2314 1.3279 17 7 6.0800 -5.9433 2.4025 18 6 7.0947 -3.7893 1.7661 19 6 8.6298 -3.6393 1.7371 20 6 9.1553 -5.0895 1.8850 21 6 8.1421 -5.9082 1.0471 22 6 3.9873 -4.6508 1.4408 23 6 3.1367 -3.3881 1.2311 24 1 -0.4851 0.8400 0.0004 25 1 0.6938 -2.5971 -0.9322 26 1 0.5583 -2.5188 0.8409 27 1 3.5681 -2.9852 -1.3457 28 1 2.1969 -3.9443 -1.9537 29 1 4.3792 -5.2181 -1.9211 30 1 3.1056 -5.9770 -0.9329 31 1 5.7976 -6.8641 2.1016 32 1 6.6472 -5.9931 3.2356 33 1 6.6369 -3.0822 1.0741 34 1 6.7217 -3.6174 2.7757 35 1 8.9534 -3.2114 0.7882 36 1 8.9686 -3.0231 2.5699 37 1 9.1351 -5.4024 2.9290 38 1 10.1607 -5.1829 1.4747 39 1 8.1258 -6.9471 1.3766 40 1 8.3856 -5.8492 -0.0138 41 1 3.3529 -5.4723 1.7735 42 1 4.7584 -4.4549 2.1860 43 1 3.7852 -2.5444 0.9948 44 1 2.5766 -3.1726 2.1410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134826010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = -27.027789 kcal Electronic energy + Delta-G solvation = -23656.170659 eV Core-core repulsion = 20415.050099 eV Total energy + Delta-G solvation = -3241.120560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58518 -38.13236 -36.99429 -34.45520 -32.85837 -32.15218 -30.49678 -28.92883 -28.14764 -27.05565 -25.26719 -23.11952 -22.63727 -21.29456 -20.98051 -19.75744 -18.30576 -16.99662 -16.42230 -16.20449 -15.78644 -15.09655 -14.80693 -14.77138 -14.53219 -14.24628 -13.78634 -13.58226 -13.48342 -13.24735 -12.65066 -12.40812 -11.95404 -11.82223 -11.52674 -11.43102 -11.29124 -11.27344 -11.12695 -10.98091 -10.87218 -10.76933 -10.59314 -10.50789 -10.24426 -9.82034 -9.61813 -9.57150 -8.71095 -8.45984 -8.27302 -7.18688 -6.04857 -4.13988 2.76151 3.24729 3.27681 3.33192 3.36697 4.11193 4.36020 4.38891 4.49914 4.66325 4.97997 5.05365 5.22003 5.25849 5.28231 5.37854 5.46136 5.56934 5.62082 5.65998 5.70936 5.80560 5.88557 5.91967 5.96581 6.06039 6.06799 6.14910 6.19143 6.33446 6.54755 6.67615 6.76169 6.82199 6.91849 7.14511 7.24760 7.51511 7.73855 7.88603 8.01430 8.24150 8.29898 8.39764 8.96447 9.53178 11.00248 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020599 B = 0.004973 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.950500 B = 5628.490374 C = 6304.401408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.050 3.950 12 C 0.113 3.887 13 N -0.591 5.591 14 C 0.523 3.477 15 O -0.556 6.556 16 C 0.101 3.899 17 N -0.824 5.824 18 C -0.111 4.111 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.146 4.146 22 C 0.108 3.892 23 C 0.048 3.952 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.345 0.655 32 H 0.346 0.654 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.041 0.959 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 -11.689 6.074 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.588 4.588 8 H 0.075 0.925 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.080 4.080 12 C -0.010 4.010 13 N -0.322 5.322 14 C 0.309 3.691 15 O -0.434 6.434 16 C 0.005 3.995 17 N -0.356 5.356 18 C -0.149 4.149 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.185 4.185 22 C -0.014 4.014 23 C -0.081 4.081 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.060 0.940 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.626 -11.505 5.553 18.678 hybrid contribution 1.431 1.176 -0.273 1.872 sum 15.056 -10.329 5.279 19.007 Atomic orbital electron populations 1.69945 1.05995 1.26735 1.50201 1.24950 0.94741 0.99114 0.94888 0.86610 0.80132 0.84020 0.77702 1.19912 1.20944 1.20871 1.21785 0.93330 0.92067 1.51604 0.92488 1.19778 0.90848 0.85505 0.97783 1.62499 1.16864 1.44400 1.02716 1.22243 0.96443 0.95321 0.93963 1.21819 0.92421 0.98680 0.88097 1.48119 1.06223 1.66934 1.10937 1.20292 0.82303 0.76485 0.89989 1.90642 1.71893 1.51331 1.29538 1.21581 0.91842 0.96240 0.89806 1.59209 1.45702 1.24175 1.06550 1.22228 0.96302 0.93568 1.02809 1.22389 0.94871 0.96801 1.02176 1.22470 0.98635 0.95229 0.99592 1.23092 0.94207 0.98311 1.02920 1.22481 0.97230 0.97194 0.84538 1.22422 0.94710 0.95151 0.95848 0.92848 0.95629 0.94523 0.94477 0.90672 0.89883 0.91427 0.84184 0.83991 0.90863 0.89683 0.91345 0.91205 0.91633 0.91368 0.91728 0.89068 0.91774 0.86769 0.94037 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.28 55.43 0.74 -25.27 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.55 -14.96 7.84 -34.44 -0.27 -15.23 16 8 H 0.06 1.57 5.91 -52.48 -0.31 1.26 16 9 C 0.19 4.74 5.21 -4.97 -0.03 4.71 16 10 N -0.54 -11.39 4.83 -235.46 -1.14 -12.53 16 11 C 0.05 0.97 5.37 -3.71 -0.02 0.95 16 12 C 0.11 1.89 6.61 -3.60 -0.02 1.86 16 13 N -0.59 -9.43 3.00 -172.18 -0.52 -9.94 16 14 C 0.52 8.20 6.35 -10.99 -0.07 8.13 16 15 O -0.56 -10.40 14.91 5.56 0.08 -10.32 16 16 C 0.10 1.17 0.68 -131.63 -0.09 1.08 16 17 N -0.82 -7.40 5.85 0.72 0.00 -7.40 16 18 C -0.11 -1.27 5.21 -25.61 -0.13 -1.40 16 19 C -0.12 -1.22 6.84 -25.03 -0.17 -1.39 16 20 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 21 C -0.15 -1.52 5.93 -25.07 -0.15 -1.67 16 22 C 0.11 1.63 5.53 -3.37 -0.02 1.62 16 23 C 0.05 0.92 4.98 -3.47 -0.02 0.90 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.69 7.88 -51.93 -0.41 0.28 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.81 7.57 -51.93 -0.39 0.42 16 28 H 0.07 1.43 7.94 -51.93 -0.41 1.02 16 29 H 0.08 1.41 7.04 -51.93 -0.37 1.05 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.34 2.98 8.97 -39.29 -0.35 2.62 16 32 H 0.35 2.37 8.99 -39.29 -0.35 2.02 16 33 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 34 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.09 1.19 6.76 -51.93 -0.35 0.84 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.11 1.53 4.23 -51.93 -0.22 1.31 16 43 H 0.04 0.88 6.33 -51.93 -0.33 0.56 16 44 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.59 334.08 -9.30 -39.89 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.23 Total: 4.07 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.26 Total: 0.08 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.91 Total: -55.14 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.59 -9.30 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134826010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.858 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds