Wall clock time and date at job start Tue Mar 31 2020 05:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00269 * 2 1 4 4 O 1.20822 * 119.99974 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00020 * 179.97438 * 3 2 1 6 6 N 1.46895 * 109.46897 * 175.66161 * 5 3 2 7 7 C 1.46902 * 110.99731 * 142.56932 * 6 5 3 8 8 C 1.53003 * 109.46924 * 202.17982 * 7 6 5 9 9 C 1.50699 * 115.54940 * 147.15592 * 8 7 6 10 10 H 1.07999 * 120.00462 * 144.05016 * 9 8 7 11 11 C 1.37879 * 119.99757 * 324.04361 * 9 8 7 12 12 N 1.31508 * 120.00188 * 344.33687 * 11 9 8 13 13 Si 1.86810 * 119.99726 * 164.33806 * 11 9 8 14 14 H 1.48495 * 109.47089 * 60.00152 * 13 11 9 15 15 H 1.48506 * 109.46821 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.46817 * 300.00017 * 13 11 9 17 17 C 1.53003 * 117.49969 * 1.44304 * 8 7 6 18 18 C 1.52998 * 117.49936 * 292.81954 * 8 7 6 19 19 C 1.46901 * 111.00238 * 266.51881 * 6 5 3 20 20 C 1.54265 * 110.02878 * 51.04613 * 19 6 5 21 21 C 1.54886 * 104.19549 * 217.10482 * 20 19 6 22 22 C 1.54888 * 102.74837 * 37.94349 * 21 20 19 23 23 C 1.53874 * 110.03024 * 293.88138 * 19 6 5 24 24 H 1.09007 * 109.46740 * 59.99426 * 1 2 3 25 25 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46671 * 300.00049 * 1 2 3 27 27 H 1.09004 * 109.46631 * 55.66153 * 5 3 2 28 28 H 1.08999 * 109.47077 * 295.66341 * 5 3 2 29 29 H 1.09003 * 109.47186 * 322.17487 * 7 6 5 30 30 H 1.08991 * 109.47529 * 82.17963 * 7 6 5 31 31 H 0.97003 * 120.00225 * 185.00995 * 12 11 9 32 32 H 1.08997 * 117.49557 * 359.97438 * 17 8 7 33 33 H 1.08996 * 117.49473 * 145.02111 * 17 8 7 34 34 H 1.08997 * 117.50550 * 214.98205 * 18 8 7 35 35 H 1.09005 * 117.49581 * 359.97438 * 18 8 7 36 36 H 1.08998 * 110.01948 * 172.48868 * 19 6 5 37 37 H 1.09001 * 110.48678 * 335.78620 * 20 19 6 38 38 H 1.09002 * 110.48567 * 98.42681 * 20 19 6 39 39 H 1.08997 * 110.75727 * 279.62923 * 21 20 19 40 40 H 1.09001 * 110.75611 * 156.25854 * 21 20 19 41 41 H 1.09000 * 110.48484 * 203.37673 * 22 21 20 42 42 H 1.08999 * 110.59735 * 80.79244 * 22 21 20 43 43 H 1.09001 * 110.02771 * 238.56455 * 23 19 6 44 44 H 1.08993 * 110.03402 * 359.97438 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9832 2.6794 -0.1043 7 6 5.1732 2.9382 0.7172 8 6 5.2576 4.4322 1.0362 9 6 5.8543 4.7780 2.3762 10 1 6.4704 5.6587 2.4820 11 6 5.6135 3.9700 3.4672 12 7 4.6374 3.0896 3.4307 13 14 6.6740 4.1261 4.9972 14 1 6.5610 5.5040 5.5392 15 1 6.2142 3.1521 6.0196 16 1 8.0900 3.8458 4.6486 17 6 4.1389 5.3319 0.5071 18 6 5.5305 5.3885 -0.1264 19 6 4.2184 3.0557 -1.5047 20 6 3.0036 2.6600 -2.3693 21 6 3.6265 2.1907 -3.7074 22 6 4.9025 1.4432 -3.2469 23 6 5.4257 2.2820 -2.0627 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 3.9598 0.7147 -0.8478 28 1 3.9522 0.8495 0.9271 29 1 5.1038 2.3718 1.6459 30 1 6.0654 2.6324 0.1710 31 1 4.4210 2.5722 4.2223 32 1 3.3431 4.8595 -0.0686 33 1 3.8342 6.1741 1.1284 34 1 6.1411 6.2680 0.0778 35 1 5.6502 4.9533 -1.1186 36 1 4.3962 4.1286 -1.5780 37 1 2.4501 1.8466 -1.9000 38 1 2.3544 3.5204 -2.5316 39 1 3.8839 3.0445 -4.3341 40 1 2.9510 1.5149 -4.2320 41 1 5.6391 1.4156 -4.0499 42 1 4.6579 0.4326 -2.9200 43 1 6.1891 2.9795 -2.4076 44 1 5.8374 1.6277 -1.2943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157124796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:39 Heat of formation + Delta-G solvation = -33.711278 kcal Electronic energy + Delta-G solvation = -24175.275534 eV Core-core repulsion = 20901.572405 eV Total energy + Delta-G solvation = -3273.703129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37379 -38.97284 -36.30211 -35.90389 -33.66469 -32.19119 -29.07982 -28.47768 -27.43679 -26.54129 -25.49385 -23.28569 -21.00141 -20.78264 -20.39355 -19.02926 -18.57936 -17.20230 -16.74045 -16.25403 -15.80932 -15.56274 -15.20658 -14.65715 -14.22528 -13.60770 -13.39964 -13.17302 -13.01114 -12.78273 -12.55216 -11.85728 -11.75785 -11.59443 -11.40071 -11.22183 -10.98933 -10.89108 -10.84580 -10.76874 -10.51032 -10.46441 -10.32885 -10.21374 -10.07567 -9.91446 -9.75417 -9.11016 -9.01071 -8.58708 -7.87569 -7.40625 -5.99323 -4.01555 2.78724 3.03671 3.29803 3.35490 3.38862 4.38465 4.57506 4.85921 4.93724 5.05708 5.19245 5.26042 5.29689 5.36284 5.52237 5.61867 5.67055 5.67859 5.76431 5.79465 5.84714 5.85826 5.86982 6.03631 6.09578 6.24047 6.30591 6.45706 6.46778 6.51819 6.61244 6.73710 6.78765 6.91253 7.00417 7.08163 7.37644 7.61357 7.65104 7.83805 7.98865 8.13092 8.37049 8.55896 8.92605 9.54001 10.99720 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.006681 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.104116 B = 4189.751568 C = 5212.017157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.458 3.542 4 O -0.478 6.478 5 C 0.065 3.935 6 N -0.499 5.499 7 C 0.081 3.919 8 C 0.062 3.938 9 C -0.488 4.488 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.869 5.869 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.184 4.184 18 C -0.230 4.230 19 C 0.067 3.933 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.160 4.160 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -7.694 -10.721 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.291 6.291 3 C 0.299 3.701 4 O -0.362 6.362 5 C -0.065 4.065 6 N -0.221 5.221 7 C -0.044 4.044 8 C 0.061 3.939 9 C -0.526 4.526 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.506 5.506 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.223 4.223 18 C -0.267 4.267 19 C -0.041 4.041 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.199 4.199 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.144 0.856 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.950 -7.274 -10.402 13.294 hybrid contribution 0.877 -0.207 0.546 1.054 sum -3.073 -7.481 -9.856 12.750 Atomic orbital electron populations 1.23115 0.77438 1.02806 1.02261 1.86503 1.22642 1.34780 1.85194 1.24056 0.92536 0.80969 0.72565 1.90657 1.66496 1.35971 1.43068 1.21558 0.87635 0.93309 1.04011 1.61590 1.37250 1.15770 1.07506 1.22165 0.85909 0.99254 0.97120 1.18838 0.96638 0.87525 0.90928 1.20541 1.30598 1.09359 0.92066 0.92253 1.24975 0.94765 0.95210 0.98392 1.69871 1.26772 1.25283 1.28701 0.86720 0.81204 0.77956 0.82532 1.20313 1.21277 1.20176 1.22956 0.91144 1.03822 1.04333 1.23161 1.01677 1.04128 0.97692 1.22888 0.92299 1.01461 0.87449 1.22617 0.97508 1.01257 0.94409 1.22524 0.96775 0.99630 0.97468 1.22361 0.97186 0.98659 0.97827 1.22916 0.99551 0.99533 0.97875 0.92459 0.88823 0.92095 0.90812 0.87234 0.85588 0.96602 0.92873 0.89262 0.91711 0.91402 0.91207 0.87651 0.91730 0.91479 0.91619 0.92127 0.92158 0.92088 0.91703 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -5.83 10.57 -39.25 -0.41 -6.24 16 3 C 0.46 8.32 5.88 36.01 0.21 8.53 16 4 O -0.48 -10.08 15.05 -18.75 -0.28 -10.36 16 5 C 0.06 1.14 4.84 -4.98 -0.02 1.11 16 6 N -0.50 -9.88 2.73 -226.74 -0.62 -10.50 16 7 C 0.08 1.82 4.68 -3.82 -0.02 1.80 16 8 C 0.06 1.52 2.34 -155.66 -0.36 1.16 16 9 C -0.49 -13.26 9.02 -34.44 -0.31 -13.57 16 10 H 0.06 1.62 7.86 -52.49 -0.41 1.21 16 11 C 0.07 1.85 5.08 -17.82 -0.09 1.76 16 12 N -0.87 -23.68 10.89 55.43 0.60 -23.08 16 13 Si 0.89 20.63 29.57 -169.99 -5.03 15.60 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.18 -4.42 9.11 -26.73 -0.24 -4.67 16 18 C -0.23 -5.05 9.25 -26.73 -0.25 -5.30 16 19 C 0.07 1.16 1.86 -66.60 -0.12 1.03 16 20 C -0.12 -1.87 5.47 -25.07 -0.14 -2.01 16 21 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.51 6.46 -25.07 -0.16 -1.67 16 23 C -0.16 -2.36 4.83 -25.61 -0.12 -2.49 16 24 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.07 1.12 5.49 -51.93 -0.28 0.83 16 28 H 0.11 1.97 7.27 -51.93 -0.38 1.59 16 29 H 0.13 3.14 4.45 -51.93 -0.23 2.91 16 30 H 0.02 0.34 5.85 -51.93 -0.30 0.03 16 31 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 32 H 0.09 2.14 5.92 -51.93 -0.31 1.83 16 33 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.07 1.39 5.68 -51.93 -0.30 1.09 16 36 H 0.11 1.97 3.95 -51.93 -0.20 1.77 16 37 H 0.06 1.06 3.96 -51.93 -0.21 0.85 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.72 7.62 -51.93 -0.40 0.33 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.08 5.74 -51.93 -0.30 0.78 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -29.18 329.90 -8.18 -37.36 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.68 Total: 6.78 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.74 Total: -14.52 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: -0.02 Total: -33.58 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.70 Total: -16.61 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.18 -8.18 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157124796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.647 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds