Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.47101 * 119.99684 * 2 1 3 5 5 C 1.53001 * 109.47245 * 64.99820 * 4 2 1 6 6 C 1.50694 * 109.47497 * 180.02562 * 5 4 2 7 7 N 1.29945 * 126.29030 * 270.02818 * 6 5 4 8 8 O 1.21300 * 110.25315 * 179.68111 * 7 6 5 9 9 C 1.33647 * 109.80935 * 0.46813 * 8 7 6 10 10 C 1.50700 * 126.55004 * 179.79688 * 9 8 7 11 11 N 1.46901 * 109.47327 * 269.69037 * 10 9 8 12 12 C 1.46894 * 111.00123 * 293.95332 * 11 10 9 13 13 C 1.46902 * 110.99644 * 169.99950 * 11 10 9 14 14 H 1.08996 * 109.47149 * 309.99327 * 13 11 10 15 15 C 1.52997 * 109.47094 * 70.00221 * 13 11 10 16 16 C 1.50706 * 109.46577 * 190.00011 * 13 11 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 N 1.31125 * 106.89740 * 359.54171 * 9 8 7 25 25 H 1.08998 * 109.47217 * 300.00913 * 1 2 3 26 26 H 1.09006 * 109.46591 * 60.00552 * 1 2 3 27 27 H 1.08996 * 109.46849 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47449 * 239.99541 * 2 1 3 29 29 H 1.09001 * 109.47777 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46822 * 300.00079 * 3 2 1 31 31 H 1.08998 * 109.47658 * 59.99357 * 3 2 1 32 32 H 1.09000 * 109.47327 * 305.00385 * 4 2 1 33 33 H 1.08998 * 109.47732 * 185.00157 * 4 2 1 34 34 H 1.09003 * 109.46996 * 60.00048 * 5 4 2 35 35 H 1.09007 * 109.46843 * 300.00708 * 5 4 2 36 36 H 1.08997 * 109.46811 * 149.69032 * 10 9 8 37 37 H 1.09000 * 109.46771 * 29.69174 * 10 9 8 38 38 H 1.09007 * 109.47149 * 296.05065 * 12 11 10 39 39 H 1.09002 * 109.47016 * 56.04488 * 12 11 10 40 40 H 1.08993 * 109.47669 * 176.04501 * 12 11 10 41 41 H 1.09002 * 109.47153 * 299.99508 * 15 13 11 42 42 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 43 43 H 1.09004 * 109.47261 * 59.99681 * 15 13 11 44 44 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.1370 -2.9057 2.4189 7 7 3.2884 -3.4930 2.5523 8 8 3.3926 -3.9651 3.6648 9 6 2.2797 -3.7250 4.3647 10 6 2.0044 -4.1466 5.7851 11 7 1.3637 -5.4685 5.7881 12 6 0.0294 -5.4082 5.1767 13 6 1.2947 -6.0169 7.1492 14 1 2.2768 -5.9513 7.6175 15 6 0.2830 -5.2159 7.9712 16 6 0.8628 -7.4595 7.0881 17 1 0.6593 -7.9223 6.1337 18 6 0.7263 -8.1879 8.2507 19 7 0.3488 -9.4466 8.1974 20 14 1.0760 -7.3868 9.9015 21 1 -0.1709 -6.7776 10.4302 22 1 1.5687 -8.4129 10.8552 23 1 2.1083 -6.3329 9.7314 24 7 1.4754 -3.0477 3.5813 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5488 -2.2723 1.1421 36 1 1.3425 -3.4209 6.2576 37 1 2.9427 -4.1963 6.3376 38 1 -0.6175 -4.7697 5.7784 39 1 0.1094 -4.9984 4.1698 40 1 -0.3938 -6.4114 5.1280 41 1 0.5955 -4.1726 8.0153 42 1 0.2316 -5.6232 8.9809 43 1 -0.6991 -5.2816 7.5028 44 1 0.2524 -9.9590 9.0154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161819439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 63.524052 kcal Electronic energy + Delta-G solvation = -22190.565618 eV Core-core repulsion = 18953.371680 eV Total energy + Delta-G solvation = -3237.193938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.36824 -37.81191 -37.55266 -35.54878 -33.50103 -32.31437 -30.64528 -29.76096 -27.59167 -27.46557 -25.39479 -25.08384 -24.38678 -22.94698 -20.93941 -20.29298 -19.51036 -17.84685 -17.23590 -16.67391 -15.79952 -15.52671 -15.04169 -14.66671 -14.47165 -14.30313 -14.18313 -13.56980 -13.28959 -13.03107 -12.61322 -12.60441 -12.39545 -12.28176 -12.19514 -11.74753 -11.64576 -11.55123 -11.37174 -11.27848 -11.01492 -10.95901 -10.94164 -10.85420 -10.74778 -10.43066 -10.10861 -9.80711 -9.53968 -9.17200 -8.64238 -7.62570 -6.11556 -4.10904 1.32839 2.35338 3.03664 3.21673 3.30549 3.34956 3.68894 4.12381 4.34022 4.55095 4.56617 4.61798 4.70387 4.95772 5.16236 5.17507 5.20119 5.32666 5.33347 5.36779 5.43584 5.54215 5.59948 5.65970 5.73753 5.74861 5.86839 5.93019 5.94448 6.03967 6.09164 6.12274 6.15225 6.18858 6.20730 6.41223 6.59313 6.80344 7.04540 7.47452 7.70390 7.83231 8.35691 8.55312 8.96224 9.48770 11.01399 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003076 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.844205 B = 9099.650336 C = 9166.189712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.027 4.027 6 C 0.166 3.834 7 N -0.391 5.391 8 O 0.081 5.919 9 C 0.212 3.788 10 C 0.133 3.867 11 N -0.518 5.518 12 C 0.028 3.972 13 C 0.184 3.816 14 H 0.045 0.955 15 C -0.190 4.190 16 C -0.504 4.504 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.886 3.114 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.267 1.267 24 N -0.486 5.486 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.027 0.973 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 19.081 -11.911 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.066 4.066 6 C -0.107 4.107 7 N -0.100 5.100 8 O 0.024 5.976 9 C -0.008 4.008 10 C 0.003 3.997 11 N -0.243 5.243 12 C -0.120 4.120 13 C 0.077 3.923 14 H 0.063 0.937 15 C -0.249 4.249 16 C -0.542 4.542 17 H 0.101 0.899 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.192 1.192 24 N -0.220 5.220 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.479 18.764 -12.837 22.870 hybrid contribution -0.410 0.711 1.654 1.847 sum 2.069 19.475 -11.183 22.553 Atomic orbital electron populations 1.21921 0.94983 1.02137 1.01840 1.21102 0.96145 0.96234 0.97897 1.21832 1.00968 0.95849 1.01824 1.21621 1.01248 0.93148 0.98700 1.20009 1.02197 0.94179 0.90239 1.25768 0.88489 0.99666 0.96758 1.74596 1.21330 1.14923 0.99153 1.85297 1.38351 1.56566 1.17361 1.28901 0.81640 0.91913 0.98391 1.20646 1.02223 0.94059 0.82755 1.62233 1.21302 1.17244 1.23497 1.22385 0.89364 1.02788 0.97427 1.19848 0.95112 0.95106 0.82201 0.93690 1.22874 1.02550 0.98098 1.01354 1.20857 1.45657 0.92414 0.95266 0.89900 1.24906 0.94709 0.94743 0.98768 1.69873 1.47213 1.08069 1.28335 0.86893 0.78636 0.78534 0.84283 1.20711 1.22343 1.19217 1.71914 1.29442 1.19022 1.01655 0.92482 0.92734 0.92242 0.90981 0.92707 0.92616 0.92619 0.91228 0.91648 0.89365 0.88585 0.90492 0.87520 0.95424 0.93178 0.89864 0.95131 0.93322 0.92052 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.95 37.16 0.33 -0.73 16 2 C -0.10 -0.69 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.11 -0.99 4.66 -26.73 -0.12 -1.12 16 5 C -0.03 -0.29 5.60 -27.89 -0.16 -0.45 16 6 C 0.17 2.43 7.47 -156.37 -1.17 1.27 16 7 N -0.39 -6.33 12.16 30.90 0.38 -5.96 16 8 O 0.08 1.35 11.31 18.09 0.20 1.56 16 9 C 0.21 3.42 7.13 -13.06 -0.09 3.32 16 10 C 0.13 2.10 5.16 -4.98 -0.03 2.08 16 11 N -0.52 -10.14 4.69 -237.73 -1.12 -11.26 16 12 C 0.03 0.54 8.64 60.06 0.52 1.05 16 13 C 0.18 4.05 1.90 -68.86 -0.13 3.92 16 14 H 0.05 1.00 6.99 -51.93 -0.36 0.64 16 15 C -0.19 -3.82 7.92 37.16 0.29 -3.53 16 16 C -0.50 -13.49 8.55 -34.44 -0.29 -13.79 16 17 H 0.08 2.46 7.35 -52.49 -0.39 2.07 16 18 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 19 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 20 Si 0.89 20.94 24.37 -169.99 -4.14 16.79 16 21 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 22 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -5.92 6.53 56.52 0.37 -5.56 16 24 N -0.49 -7.71 10.74 -9.87 -0.11 -7.81 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.95 6.56 -51.92 -0.34 0.61 16 36 H 0.08 1.12 7.06 -51.93 -0.37 0.75 16 37 H 0.11 1.49 7.93 -51.93 -0.41 1.08 16 38 H 0.03 0.49 6.21 -51.92 -0.32 0.17 16 39 H 0.05 0.90 6.55 -51.93 -0.34 0.56 16 40 H 0.08 1.73 6.86 -51.93 -0.36 1.38 16 41 H 0.03 0.51 6.91 -51.93 -0.36 0.15 16 42 H 0.05 1.03 3.27 -51.93 -0.17 0.87 16 43 H 0.06 1.22 6.33 -51.93 -0.33 0.90 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -29.68 341.44 -6.80 -36.48 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.07 Total: -1.34 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.87 Total: -7.70 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.07 Total: -50.93 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.68 -6.80 -36.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161819439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.002 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds