Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.47101 * 119.99684 * 2 1 3 5 5 C 1.53001 * 109.47245 * 64.99820 * 4 2 1 6 6 C 1.50694 * 109.47497 * 180.02562 * 5 4 2 7 7 N 1.29945 * 126.29030 * 270.02818 * 6 5 4 8 8 O 1.21300 * 110.25315 * 179.68111 * 7 6 5 9 9 C 1.33647 * 109.80935 * 0.46813 * 8 7 6 10 10 C 1.50700 * 126.55004 * 179.79688 * 9 8 7 11 11 N 1.46901 * 109.47327 * 269.69037 * 10 9 8 12 12 C 1.46894 * 111.00123 * 293.95332 * 11 10 9 13 13 C 1.46902 * 110.99644 * 169.99950 * 11 10 9 14 14 H 1.08996 * 109.47149 * 309.99327 * 13 11 10 15 15 C 1.52997 * 109.47094 * 70.00221 * 13 11 10 16 16 C 1.50706 * 109.46577 * 190.00011 * 13 11 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 11 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 N 1.31125 * 106.89740 * 359.54171 * 9 8 7 25 25 H 1.08998 * 109.47217 * 300.00913 * 1 2 3 26 26 H 1.09006 * 109.46591 * 60.00552 * 1 2 3 27 27 H 1.08996 * 109.46849 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47449 * 239.99541 * 2 1 3 29 29 H 1.09001 * 109.47777 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46822 * 300.00079 * 3 2 1 31 31 H 1.08998 * 109.47658 * 59.99357 * 3 2 1 32 32 H 1.09000 * 109.47327 * 305.00385 * 4 2 1 33 33 H 1.08998 * 109.47732 * 185.00157 * 4 2 1 34 34 H 1.09003 * 109.46996 * 60.00048 * 5 4 2 35 35 H 1.09007 * 109.46843 * 300.00708 * 5 4 2 36 36 H 1.08997 * 109.46811 * 149.69032 * 10 9 8 37 37 H 1.09000 * 109.46771 * 29.69174 * 10 9 8 38 38 H 1.09007 * 109.47149 * 296.05065 * 12 11 10 39 39 H 1.09002 * 109.47016 * 56.04488 * 12 11 10 40 40 H 1.08993 * 109.47669 * 176.04501 * 12 11 10 41 41 H 1.09002 * 109.47153 * 299.99508 * 15 13 11 42 42 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 43 43 H 1.09004 * 109.47261 * 59.99681 * 15 13 11 44 44 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.1370 -2.9057 2.4189 7 7 3.2884 -3.4930 2.5523 8 8 3.3926 -3.9651 3.6648 9 6 2.2797 -3.7250 4.3647 10 6 2.0044 -4.1466 5.7851 11 7 1.3637 -5.4685 5.7881 12 6 0.0294 -5.4082 5.1767 13 6 1.2947 -6.0169 7.1492 14 1 2.2768 -5.9513 7.6175 15 6 0.2830 -5.2159 7.9712 16 6 0.8628 -7.4595 7.0881 17 1 0.6593 -7.9223 6.1337 18 6 0.7263 -8.1879 8.2507 19 7 0.3488 -9.4466 8.1974 20 14 1.0760 -7.3868 9.9015 21 1 -0.1709 -6.7776 10.4302 22 1 1.5687 -8.4129 10.8552 23 1 2.1083 -6.3329 9.7314 24 7 1.4754 -3.0477 3.5813 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5488 -2.2723 1.1421 36 1 1.3425 -3.4209 6.2576 37 1 2.9427 -4.1963 6.3376 38 1 -0.6175 -4.7697 5.7784 39 1 0.1094 -4.9984 4.1698 40 1 -0.3938 -6.4114 5.1280 41 1 0.5955 -4.1726 8.0153 42 1 0.2316 -5.6232 8.9809 43 1 -0.6991 -5.2816 7.5028 44 1 0.2524 -9.9590 9.0154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161819439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 42.883306 kcal Electronic energy + Delta-G solvation = -22191.460668 eV Core-core repulsion = 18953.371680 eV Total energy + Delta-G solvation = -3238.088988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.58052 -39.36530 -38.31274 -36.64215 -35.06701 -33.93293 -31.80747 -31.18025 -28.96445 -28.00455 -27.20659 -26.04547 -25.94029 -24.13451 -22.18421 -21.13077 -20.91144 -19.09614 -18.71472 -18.35233 -17.29812 -16.41567 -16.20150 -16.01712 -15.93455 -15.56228 -15.01730 -14.83726 -14.55164 -14.23433 -13.96132 -13.87992 -13.54977 -13.30190 -13.22318 -13.00338 -12.94427 -12.89610 -12.54050 -12.44171 -12.34741 -12.20858 -12.01752 -11.87298 -11.75922 -11.55303 -11.48457 -11.40085 -11.12347 -10.89343 -10.71510 -9.14239 -8.23681 -6.27630 0.09081 1.17582 1.36300 1.41964 1.52063 1.81371 2.36759 2.60576 3.01988 3.10650 3.26136 3.81195 3.90045 3.92086 4.06589 4.19286 4.33563 4.38000 4.39651 4.45442 4.55825 4.59107 4.61911 4.65779 4.72829 4.78606 4.80296 4.86533 4.92495 4.97266 5.01742 5.04300 5.09738 5.12040 5.19631 5.31166 5.43512 5.46466 5.51009 5.63028 5.94428 6.20368 6.59630 6.78931 7.14227 7.36567 8.93350 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003076 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.844205 B = 9099.650336 C = 9166.189712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.100 4.100 5 C -0.028 4.028 6 C 0.170 3.830 7 N -0.408 5.408 8 O 0.067 5.933 9 C 0.209 3.791 10 C 0.136 3.864 11 N -0.538 5.538 12 C 0.040 3.960 13 C 0.188 3.812 14 H 0.053 0.947 15 C -0.186 4.186 16 C -0.504 4.504 17 H 0.034 0.966 18 C 0.009 3.991 19 N -0.952 5.952 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.304 1.304 23 H -0.236 1.236 24 N -0.494 5.494 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 22.113 -11.606 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.067 4.067 6 C -0.103 4.103 7 N -0.120 5.120 8 O 0.013 5.987 9 C -0.012 4.012 10 C 0.007 3.993 11 N -0.263 5.263 12 C -0.108 4.108 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.245 4.245 16 C -0.542 4.542 17 H 0.052 0.948 18 C -0.187 4.187 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.232 1.232 23 H -0.159 1.159 24 N -0.229 5.229 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.859 21.824 -12.543 25.334 hybrid contribution -0.538 -0.243 1.389 1.509 sum 2.322 21.581 -11.154 24.404 Atomic orbital electron populations 1.21924 0.94677 1.02144 1.02141 1.21082 0.96342 0.96460 0.97087 1.21829 1.00981 0.95409 1.02215 1.21557 1.00796 0.92153 0.99399 1.20241 1.02721 0.94756 0.88936 1.26452 0.87826 0.98646 0.97395 1.74600 1.22306 1.15916 0.99162 1.85276 1.38752 1.57005 1.17676 1.28990 0.81654 0.91961 0.98562 1.20752 1.03280 0.92281 0.83015 1.61997 1.21745 1.20248 1.22339 1.22213 0.89431 1.01077 0.98092 1.19641 0.95745 0.92539 0.83979 0.92939 1.22753 1.01642 1.00057 1.00012 1.21126 1.44612 0.95246 0.93264 0.94753 1.25811 0.94653 0.95102 1.03173 1.70051 1.49623 1.10174 1.29429 0.85830 0.79660 0.78037 0.78668 1.19483 1.23230 1.15919 1.71933 1.29588 1.19237 1.02127 0.92896 0.91762 0.92378 0.90281 0.92725 0.91635 0.92849 0.92019 0.92270 0.88248 0.87687 0.88306 0.85367 0.94015 0.92512 0.93151 0.91021 0.94150 0.92560 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 71.98 0.64 -1.18 16 2 C -0.09 -1.15 2.92 -10.79 -0.03 -1.18 16 3 C -0.15 -1.67 9.19 71.98 0.66 -1.01 16 4 C -0.10 -1.67 4.66 30.60 0.14 -1.52 16 5 C -0.03 -0.54 5.60 29.85 0.17 -0.38 16 6 C 0.17 4.73 7.47 138.46 1.03 5.77 16 7 N -0.41 -12.82 12.16 -60.31 -0.73 -13.55 16 8 O 0.07 2.16 11.31 74.80 0.85 3.00 16 9 C 0.21 6.36 7.13 88.38 0.63 6.99 16 10 C 0.14 3.90 5.16 85.56 0.44 4.34 16 11 N -0.54 -20.35 4.69 -906.05 -4.25 -24.61 16 12 C 0.04 1.48 8.64 127.69 1.10 2.59 16 13 C 0.19 7.96 1.90 44.17 0.08 8.04 16 14 H 0.05 2.17 6.99 -2.39 -0.02 2.15 16 15 C -0.19 -6.85 7.92 71.98 0.57 -6.28 16 16 C -0.50 -27.53 8.55 25.60 0.22 -27.31 16 17 H 0.03 2.15 7.35 -2.91 -0.02 2.13 16 18 C 0.01 0.53 5.45 84.66 0.46 0.99 16 19 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 20 Si 0.95 42.38 24.37 68.60 1.67 44.05 16 21 H -0.27 -11.41 6.87 99.48 0.68 -10.73 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.24 -9.25 6.53 99.48 0.65 -8.60 16 24 N -0.49 -14.80 10.74 -303.19 -3.26 -18.06 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.71 6.56 -2.39 -0.02 0.69 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.88 6.56 -2.38 -0.02 1.86 16 36 H 0.10 2.44 7.06 -2.39 -0.02 2.43 16 37 H 0.13 3.12 7.93 -2.39 -0.02 3.10 16 38 H 0.04 1.41 6.21 -2.38 -0.01 1.40 16 39 H 0.06 2.00 6.55 -2.39 -0.02 1.98 16 40 H 0.05 2.17 6.86 -2.39 -0.02 2.15 16 41 H 0.07 2.06 6.91 -2.39 -0.02 2.04 16 42 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 43 H 0.06 2.11 6.33 -2.38 -0.02 2.09 16 44 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -65.78 341.44 1.61 -64.17 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.90 Total: 13.49 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 6.13 Total: -10.15 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -7.94 Total: -114.57 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.67 Total: 44.05 kcal Total: -65.78 1.61 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161819439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.056 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds