Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47506 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3 5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.29949 * 126.28516 * 90.02698 * 6 5 4 8 8 O 1.21303 * 110.24828 * 179.97438 * 7 6 5 9 9 C 1.33639 * 109.81167 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.55166 * 179.97438 * 9 8 7 11 11 N 1.46893 * 109.47042 * 269.97308 * 10 9 8 12 12 C 1.46908 * 110.99651 * 66.04636 * 11 10 9 13 13 C 1.46902 * 110.99951 * 189.99536 * 11 10 9 14 14 H 1.09005 * 109.46584 * 55.00682 * 13 11 10 15 15 C 1.52996 * 109.47233 * 295.00247 * 13 11 10 16 16 C 1.50700 * 109.46924 * 175.00099 * 13 11 10 17 17 H 1.07997 * 120.00191 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99826 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00373 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00176 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46865 * 59.99716 * 20 18 16 22 22 H 1.48495 * 109.47087 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46705 * 300.00158 * 20 18 16 24 24 N 1.31134 * 106.89726 * 359.76539 * 9 8 7 25 25 H 1.09000 * 109.47145 * 299.99710 * 1 2 3 26 26 H 1.09002 * 109.47139 * 59.99820 * 1 2 3 27 27 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46822 * 239.99976 * 2 1 3 29 29 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47069 * 300.00223 * 3 2 1 31 31 H 1.09000 * 109.46682 * 60.00006 * 3 2 1 32 32 H 1.09004 * 109.46785 * 304.99767 * 4 2 1 33 33 H 1.09004 * 109.47694 * 184.99866 * 4 2 1 34 34 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 35 35 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 36 36 H 1.09002 * 109.46756 * 29.97587 * 10 9 8 37 37 H 1.09001 * 109.47141 * 149.96983 * 10 9 8 38 38 H 1.08997 * 109.47216 * 59.99731 * 12 11 10 39 39 H 1.09003 * 109.46674 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47051 * 299.99723 * 12 11 10 41 41 H 1.09004 * 109.46951 * 180.02562 * 15 13 11 42 42 H 1.08994 * 109.47223 * 299.99764 * 15 13 11 43 43 H 1.09003 * 109.47005 * 60.00083 * 15 13 11 44 44 H 0.96994 * 120.00304 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 6 2.1370 -2.9059 2.4186 7 7 1.4977 -3.0435 3.5415 8 8 2.1723 -3.6654 4.3351 9 6 3.3415 -3.9929 3.7770 10 6 4.4610 -4.7652 4.4264 11 7 5.3760 -3.8313 5.0959 12 6 4.7131 -3.1621 6.2233 13 6 6.5987 -4.5166 5.5357 14 1 7.0595 -5.0190 4.6851 15 6 6.2470 -5.5490 6.6086 16 6 7.5625 -3.5080 6.1057 17 1 7.2934 -2.4626 6.1385 18 6 8.7877 -3.9199 6.5854 19 7 9.1156 -5.1928 6.5451 20 14 9.9821 -2.6698 7.2927 21 1 9.3543 -1.9862 8.4520 22 1 11.2181 -3.3625 7.7371 23 1 10.3230 -1.6670 6.2519 24 7 3.3269 -3.5178 2.5549 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6445 1.2951 34 1 2.0698 -2.6550 0.3001 35 1 0.5488 -2.2725 1.1419 36 1 4.0471 -5.4572 5.1599 37 1 5.0053 -5.3248 3.6657 38 1 4.3845 -3.9084 6.9465 39 1 5.4131 -2.4768 6.7014 40 1 3.8503 -2.6049 5.8586 41 1 7.1544 -6.0571 6.9352 42 1 5.7863 -5.0466 7.4591 43 1 5.5499 -6.2785 6.1962 44 1 9.9777 -5.4825 6.8822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161819564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = 35.550743 kcal Electronic energy + Delta-G solvation = -22209.455334 eV Core-core repulsion = 18971.048382 eV Total energy + Delta-G solvation = -3238.406952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.59406 -39.18226 -38.31579 -36.66187 -35.11522 -33.84124 -31.53136 -30.62466 -28.98079 -28.01230 -27.19012 -26.13751 -25.83571 -24.05129 -22.31001 -21.12423 -20.88863 -19.15525 -18.49926 -18.15079 -17.10281 -16.46676 -16.14269 -16.04276 -15.83070 -15.33714 -15.02654 -14.59248 -14.42633 -14.39183 -13.77602 -13.64836 -13.27435 -13.26713 -13.00661 -12.94065 -12.88030 -12.67225 -12.59185 -12.43947 -12.36507 -12.32897 -12.04179 -12.00414 -11.82700 -11.70795 -11.56466 -11.49764 -10.99322 -10.83690 -10.46883 -9.04368 -8.09617 -6.19529 0.07145 1.19539 1.45776 1.46703 1.53905 1.76214 2.44970 2.64671 3.02206 3.20560 3.35580 3.78286 3.88886 3.96390 4.07073 4.20195 4.31531 4.40239 4.46982 4.53382 4.55893 4.69164 4.73318 4.80254 4.81208 4.86154 4.91072 4.95700 5.00338 5.03508 5.09400 5.11132 5.12359 5.14674 5.30060 5.45838 5.50112 5.52934 5.70681 5.78240 6.12165 6.38848 6.57976 6.90607 7.13437 7.48967 8.96136 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.003485 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.580773 B = 8031.756502 C = 8931.328420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.025 4.025 6 C 0.169 3.831 7 N -0.406 5.406 8 O 0.063 5.937 9 C 0.210 3.790 10 C 0.143 3.857 11 N -0.541 5.541 12 C 0.037 3.963 13 C 0.220 3.780 14 H 0.020 0.980 15 C -0.164 4.164 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.276 1.276 24 N -0.493 5.493 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 5.803 -10.193 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.064 4.064 6 C -0.104 4.104 7 N -0.117 5.117 8 O 0.009 5.991 9 C -0.012 4.012 10 C 0.013 3.987 11 N -0.267 5.267 12 C -0.111 4.111 13 C 0.114 3.886 14 H 0.038 0.962 15 C -0.223 4.223 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.182 4.182 19 N -0.556 5.556 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.202 1.202 24 N -0.228 5.228 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.185 6.425 -10.742 20.460 hybrid contribution 0.878 -0.238 1.327 1.609 sum -15.307 6.187 -9.415 19.006 Atomic orbital electron populations 1.21914 0.94317 1.02305 1.02154 1.21079 0.96563 0.96232 0.96980 1.21845 1.00876 0.95696 1.02193 1.21577 1.00771 0.92699 0.99285 1.20243 1.02322 0.94299 0.89540 1.26523 0.87759 0.98877 0.97233 1.74560 1.19513 1.14975 1.02663 1.85265 1.24111 1.51887 1.37840 1.28971 0.88855 0.95217 0.88109 1.20629 0.87480 0.91549 0.99049 1.62226 1.05564 1.30112 1.28781 1.22250 0.97670 0.98652 0.92575 1.19105 0.85122 0.91521 0.92829 0.96224 1.22265 1.00979 0.99230 0.99870 1.21303 1.00569 0.94072 1.39732 0.92687 1.25571 0.99384 0.96863 0.96335 1.69970 1.22471 1.15480 1.47640 0.85673 0.78331 0.79210 0.78762 1.19748 1.21011 1.20182 1.71947 1.19527 1.14754 1.16583 0.93092 0.91522 0.91992 0.89966 0.93132 0.91303 0.93067 0.92685 0.92783 0.87517 0.87439 0.89513 0.86403 0.94497 0.91665 0.93253 0.91677 0.94538 0.94346 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.95 71.98 0.64 -1.26 16 2 C -0.09 -1.35 2.92 -10.80 -0.03 -1.38 16 3 C -0.15 -2.20 9.19 71.98 0.66 -1.54 16 4 C -0.10 -2.12 4.66 30.59 0.14 -1.98 16 5 C -0.03 -0.53 5.60 29.85 0.17 -0.37 16 6 C 0.17 5.03 7.47 138.47 1.03 6.07 16 7 N -0.41 -12.91 12.16 -60.32 -0.73 -13.64 16 8 O 0.06 2.05 10.73 74.86 0.80 2.85 16 9 C 0.21 6.94 7.07 88.38 0.62 7.57 16 10 C 0.14 4.73 5.03 85.56 0.43 5.16 16 11 N -0.54 -21.95 4.73 -906.02 -4.29 -26.24 16 12 C 0.04 1.37 8.60 127.69 1.10 2.47 16 13 C 0.22 10.41 2.34 44.17 0.10 10.52 16 14 H 0.02 1.03 8.03 -2.38 -0.02 1.01 16 15 C -0.16 -7.21 8.28 71.98 0.60 -6.62 16 16 C -0.52 -27.37 7.88 25.60 0.20 -27.17 16 17 H 0.05 2.94 6.77 -2.91 -0.02 2.92 16 18 C 0.02 0.94 5.30 84.65 0.45 1.39 16 19 N -0.92 -50.50 11.32 21.45 0.24 -50.25 16 20 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 N -0.49 -16.75 11.55 -303.19 -3.50 -20.25 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.73 6.57 -2.39 -0.02 0.71 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 1.86 6.57 -2.39 -0.02 1.85 16 36 H 0.09 2.53 6.94 -2.39 -0.02 2.51 16 37 H 0.12 3.81 8.00 -2.39 -0.02 3.79 16 38 H 0.04 1.29 6.51 -2.39 -0.02 1.27 16 39 H 0.06 2.66 6.41 -2.39 -0.02 2.64 16 40 H 0.05 1.72 6.83 -2.39 -0.02 1.70 16 41 H 0.06 3.25 6.07 -2.38 -0.01 3.24 16 42 H 0.04 1.55 6.47 -2.39 -0.02 1.53 16 43 H 0.04 1.43 6.75 -2.39 -0.02 1.41 16 44 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -59.21 348.16 1.65 -57.56 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.98 Total: 12.40 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 6.12 Total: -7.14 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -8.28 Total: -110.39 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.80 Total: 2.85 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -59.21 1.65 -57.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161819564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.113 kcal (2) G-P(sol) polarization free energy of solvation -59.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds