Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46957 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99816 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00340 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00347 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99775 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46867 * 90.00546 * 12 10 8 14 14 H 1.48501 * 109.47216 * 210.00404 * 12 10 8 15 15 H 1.48499 * 109.47135 * 330.00745 * 12 10 8 16 16 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 17 17 N 1.31129 * 126.54816 * 254.70861 * 16 2 1 18 18 C 1.34495 * 105.61605 * 179.97438 * 17 16 2 19 19 C 1.50703 * 126.29075 * 180.13122 * 18 17 16 20 20 C 1.53005 * 109.46891 * 180.23813 * 19 18 17 21 21 C 1.52993 * 109.46922 * 300.23625 * 19 18 17 22 22 C 1.53001 * 109.47100 * 60.23727 * 19 18 17 23 23 N 1.29949 * 107.42163 * 0.35028 * 18 17 16 24 24 O 1.21294 * 110.24980 * 359.78041 * 23 18 17 25 25 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 27 27 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 28 28 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 29 29 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 30 30 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 31 31 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 32 32 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 33 33 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 34 34 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 35 35 H 0.96991 * 119.99882 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.47088 * 59.99827 * 20 19 18 37 37 H 1.09005 * 109.46695 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47416 * 299.99571 * 20 19 18 39 39 H 1.08998 * 109.47311 * 59.99907 * 21 19 18 40 40 H 1.08998 * 109.47244 * 180.02562 * 21 19 18 41 41 H 1.09002 * 109.47252 * 300.00292 * 21 19 18 42 42 H 1.08997 * 109.47266 * 60.00394 * 22 19 18 43 43 H 1.09003 * 109.46575 * 179.97438 * 22 19 18 44 44 H 1.08998 * 109.46879 * 299.99938 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6608 0.4206 -4.7694 8 6 3.1663 -0.3236 -5.9786 9 1 3.4160 -1.3715 -5.9023 10 6 3.3100 0.3334 -7.1822 11 7 3.7506 -0.3161 -8.2374 12 14 2.8774 2.1459 -7.3143 13 1 4.0777 2.9648 -7.0076 14 1 2.4133 2.4448 -8.6929 15 1 1.7976 2.4688 -6.3474 16 6 2.0324 -0.7105 1.2303 17 7 2.5546 -0.1524 2.2958 18 6 2.8534 -1.1672 3.1264 19 6 3.4759 -1.0470 4.4936 20 6 3.6520 -2.4415 5.0981 21 6 4.8411 -0.3667 4.3744 22 6 2.5665 -0.2109 5.3964 23 7 2.5110 -2.2706 2.5316 24 8 2.0373 -2.0301 1.4411 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.4496 -1.4977 -1.4102 29 1 2.7588 1.0465 -2.1182 30 1 1.0870 0.6166 -2.5526 31 1 3.5916 -0.9259 -3.3684 32 1 1.9201 -1.3564 -3.8032 33 1 1.6653 0.8135 -4.9752 34 1 3.3366 1.2446 -4.5408 35 1 3.8513 0.1461 -9.0842 36 1 4.2998 -3.0371 4.4550 37 1 4.1026 -2.3546 6.0868 38 1 2.6794 -2.9261 5.1831 39 1 4.7156 0.6266 3.9436 40 1 5.2915 -0.2802 5.3631 41 1 5.4889 -0.9624 3.7312 42 1 1.5939 -0.6955 5.4814 43 1 3.0166 -0.1244 6.3853 44 1 2.4411 0.7825 4.9656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171715190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = 40.325605 kcal Electronic energy + Delta-G solvation = -21765.756925 eV Core-core repulsion = 18527.557027 eV Total energy + Delta-G solvation = -3238.199898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.61901 -37.95811 -37.69705 -35.07232 -34.09285 -32.41506 -31.31643 -29.58302 -27.69356 -27.64002 -26.44090 -24.64867 -24.54207 -22.37125 -21.90459 -20.26974 -19.43559 -18.09790 -17.37086 -16.79867 -15.93923 -15.51161 -15.20477 -14.99012 -14.51907 -14.29829 -14.17139 -13.71433 -13.20149 -12.81529 -12.74301 -12.70578 -12.59018 -12.37287 -12.12882 -12.03815 -11.87805 -11.75495 -11.66835 -11.65026 -11.43442 -11.16766 -11.04348 -10.93407 -10.83126 -10.04262 -9.97658 -9.76226 -9.62654 -9.19176 -8.57772 -8.53572 -6.04010 -4.02164 1.11329 2.14854 2.76741 3.29356 3.30396 3.37707 3.40183 3.75437 4.21432 4.44789 4.45919 4.53454 4.64860 4.68483 4.84652 4.99381 5.25049 5.27926 5.29247 5.30856 5.37733 5.41324 5.45155 5.50401 5.50874 5.55471 5.61786 5.65846 5.75087 5.81865 5.90995 5.95808 5.98628 6.06800 6.41820 6.49275 6.85395 6.94383 7.26975 7.30122 7.43195 7.79362 8.13776 8.54518 9.01564 9.58226 11.09553 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.002694 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.704765 B =10390.380646 C =10493.122435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.175 3.825 3 H 0.123 0.877 4 N -0.684 5.684 5 C 0.058 3.942 6 C -0.100 4.100 7 C -0.012 4.012 8 C -0.520 4.520 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.207 3.793 17 N -0.483 5.483 18 C 0.177 3.823 19 C 0.025 3.975 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.137 4.137 23 N -0.385 5.385 24 O 0.083 5.917 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.351 0.649 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 0.959 27.239 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.062 3.938 3 H 0.140 0.860 4 N -0.317 5.317 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.015 4.015 17 N -0.216 5.216 18 C -0.097 4.097 19 C 0.023 3.977 20 C -0.197 4.197 21 C -0.196 4.196 22 C -0.195 4.195 23 N -0.093 5.093 24 O 0.026 5.974 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.137 0.589 27.806 28.118 hybrid contribution -1.121 1.005 -0.681 1.652 sum -5.257 1.594 27.125 27.675 Atomic orbital electron populations 1.22535 0.94094 1.03643 1.03916 1.19992 0.93522 0.96775 0.83504 0.85956 1.60431 1.57057 1.10573 1.03591 1.22256 0.99758 0.95306 0.89643 1.21461 1.01072 0.98718 0.92590 1.19538 0.96461 0.95294 0.93735 1.21141 1.43582 0.98360 0.92701 0.91003 1.25050 0.94670 0.98139 0.95760 1.69916 1.46817 1.36634 1.00941 0.86763 0.79283 0.85888 0.77222 1.20306 1.21452 1.19055 1.28817 0.94564 0.81093 0.97014 1.71785 1.17066 1.30759 1.01996 1.25702 1.00589 0.83782 0.99590 1.18967 0.95480 0.97807 0.85450 1.21832 1.02721 0.94320 1.00822 1.21856 0.94103 1.01203 1.02477 1.21848 0.98749 1.00092 0.98811 1.74617 1.16034 1.23971 0.94639 1.85284 1.58131 1.26981 1.27043 0.91325 0.91291 0.90074 0.82953 0.90937 0.94785 0.91804 0.92711 0.96737 0.96990 0.92755 0.91913 0.91338 0.92051 0.91351 0.91272 0.92369 0.92586 0.91257 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.14 37.16 0.34 -1.20 16 2 C 0.17 1.88 3.13 -68.86 -0.22 1.66 16 3 H 0.12 1.27 7.80 -51.93 -0.40 0.87 16 4 N -0.68 -8.62 6.23 -107.94 -0.67 -9.29 16 5 C 0.06 0.84 5.48 -3.82 -0.02 0.81 16 6 C -0.10 -1.88 5.41 -26.73 -0.14 -2.02 16 7 C -0.01 -0.28 4.04 -27.88 -0.11 -0.40 16 8 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 9 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 10 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 12 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 16 C 0.21 2.60 7.35 -13.06 -0.10 2.51 16 17 N -0.48 -6.35 11.55 -9.87 -0.11 -6.47 16 18 C 0.18 2.23 6.40 -156.37 -1.00 1.23 16 19 C 0.02 0.23 0.99 -155.66 -0.15 0.08 16 20 C -0.14 -1.16 7.97 37.16 0.30 -0.87 16 21 C -0.14 -1.19 8.46 37.15 0.31 -0.87 16 22 C -0.14 -1.07 8.46 37.16 0.31 -0.76 16 23 N -0.39 -5.34 11.47 30.90 0.35 -4.99 16 24 O 0.08 1.14 11.31 18.11 0.20 1.34 16 25 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.65 7.45 -51.93 -0.39 0.26 16 28 H 0.35 4.08 8.47 -39.29 -0.33 3.74 16 29 H 0.07 1.04 8.06 -51.93 -0.42 0.63 16 30 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -31.77 360.84 -7.37 -39.15 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.78 Total: -1.78 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.91 Total: -13.10 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.34 Total: -47.90 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.77 -7.37 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171715190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.474 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds