Wall clock time and date at job start Tue Mar 31 2020 05:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.52998 * 109.47089 * 173.87715 * 3 2 1 5 5 C 1.53006 * 109.47513 * 294.04637 * 4 3 2 6 6 C 1.52999 * 109.47372 * 293.87754 * 3 2 1 7 7 N 1.46906 * 109.46658 * 66.45023 * 6 3 2 8 8 C 1.46899 * 110.99848 * 199.95075 * 7 6 3 9 9 C 1.50695 * 109.47257 * 63.79646 * 8 7 6 10 10 H 1.07999 * 120.00310 * 5.15067 * 9 8 7 11 11 C 1.37883 * 119.99684 * 185.14774 * 9 8 7 12 12 N 1.31512 * 119.99761 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00322 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47180 * 89.99978 * 13 11 9 15 15 H 1.48502 * 109.47179 * 210.00113 * 13 11 9 16 16 H 1.48506 * 109.46829 * 329.99792 * 13 11 9 17 17 C 1.46895 * 111.00242 * 75.99135 * 7 6 3 18 18 C 1.50703 * 109.47490 * 189.99512 * 17 7 6 19 19 N 1.29941 * 126.29237 * 269.98229 * 18 17 7 20 20 O 1.21296 * 110.25050 * 179.72259 * 19 18 17 21 21 C 1.33638 * 109.81448 * 0.46670 * 20 19 18 22 22 C 1.50693 * 126.55571 * 179.80131 * 21 20 19 23 23 N 1.31132 * 106.89676 * 359.54009 * 21 20 19 24 24 H 1.09000 * 109.47565 * 308.07668 * 1 2 3 25 25 H 1.09007 * 109.46737 * 68.07246 * 1 2 3 26 26 H 1.08994 * 109.47364 * 188.07411 * 1 2 3 27 27 H 1.09005 * 109.47479 * 239.99820 * 2 1 3 28 28 H 1.09001 * 109.47302 * 119.99872 * 2 1 3 29 29 H 1.09005 * 109.47185 * 53.88387 * 3 2 1 30 30 H 1.09000 * 109.47371 * 54.04798 * 4 3 2 31 31 H 1.09009 * 109.47246 * 174.04687 * 4 3 2 32 32 H 1.09001 * 109.46537 * 65.62353 * 5 4 3 33 33 H 1.08997 * 109.46970 * 185.62504 * 5 4 3 34 34 H 1.09000 * 109.46941 * 305.62927 * 5 4 3 35 35 H 1.08999 * 109.47122 * 306.45323 * 6 3 2 36 36 H 1.08995 * 109.46996 * 186.44812 * 6 3 2 37 37 H 1.08994 * 109.47277 * 183.80524 * 8 7 6 38 38 H 1.09004 * 109.46652 * 303.79708 * 8 7 6 39 39 H 0.97004 * 120.00441 * 179.97438 * 12 11 9 40 40 H 1.09007 * 109.46741 * 69.99669 * 17 7 6 41 41 H 1.09004 * 109.47637 * 310.00418 * 17 7 6 42 42 H 1.09004 * 109.47444 * 269.69284 * 22 21 20 43 43 H 1.08992 * 109.47469 * 149.68945 * 22 21 20 44 44 H 1.09000 * 109.46935 * 29.68767 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5622 1.4452 0.1539 5 6 3.9362 0.9055 1.5359 6 6 1.6595 2.1180 -1.3190 7 7 0.1988 2.2542 -1.3958 8 6 -0.2398 2.4455 -2.7847 9 6 0.0962 1.2176 -3.5912 10 1 0.5101 0.3476 -3.1032 11 6 -0.1251 1.2049 -4.9521 12 7 0.1676 0.1331 -5.6558 13 14 -0.8404 2.7099 -5.7962 14 1 0.2623 3.6025 -6.2346 15 1 -1.6327 2.2848 -6.9781 16 1 -1.7197 3.4387 -4.8470 17 6 -0.2736 3.3498 -0.5389 18 6 -1.7773 3.3052 -0.4495 19 7 -2.6131 3.9081 -1.2410 20 8 -3.7544 3.6689 -0.9073 21 6 -3.7551 2.8746 0.1674 22 6 -4.9660 2.3500 0.8950 23 7 -2.5007 2.6342 0.4645 24 1 -0.3634 0.6338 0.8089 25 1 -0.3633 0.3838 -0.9534 26 1 -0.3634 -1.0174 0.1443 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5900 1.9870 0.8302 30 1 4.0063 0.8133 -0.6153 31 1 3.9363 2.4636 0.0481 32 1 3.6508 -0.1442 1.6053 33 1 5.0119 1.0002 1.6840 34 1 3.4121 1.4760 2.3027 35 1 2.0122 1.5112 -2.1530 36 1 2.1195 3.1049 -1.3676 37 1 -1.3169 2.6109 -2.8061 38 1 0.2691 3.3103 -3.2105 39 1 0.0117 0.1240 -6.6132 40 1 0.0369 4.3040 -0.9649 41 1 0.1531 3.2412 0.4582 42 1 -5.2458 3.0472 1.6848 43 1 -4.7346 1.3790 1.3327 44 1 -5.7938 2.2445 0.1937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173550298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:06 Heat of formation + Delta-G solvation = 62.572975 kcal Electronic energy + Delta-G solvation = -23487.090890 eV Core-core repulsion = 20249.855711 eV Total energy + Delta-G solvation = -3237.235180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.25660 -38.31294 -35.88143 -34.92769 -33.23551 -32.36297 -31.03896 -28.90586 -28.57946 -28.15551 -25.50924 -23.25216 -22.99850 -22.12534 -21.32340 -20.03592 -19.31261 -17.87273 -17.11715 -16.87535 -15.36104 -14.98332 -14.66604 -14.52059 -14.15251 -13.98155 -13.50101 -13.43924 -13.08080 -12.93364 -12.63264 -12.42745 -12.14910 -12.00318 -11.85259 -11.64761 -11.51941 -11.26203 -11.02367 -10.85940 -10.76588 -10.68004 -10.59378 -10.29782 -10.11515 -9.85699 -9.76362 -9.73610 -9.47821 -9.25464 -8.57555 -7.31566 -6.06485 -4.03863 1.46726 2.55700 3.09914 3.28288 3.36472 3.44160 3.91701 4.35123 4.42751 4.76026 5.12650 5.19890 5.20400 5.22424 5.26410 5.30926 5.37210 5.57795 5.60924 5.69215 5.83651 5.88073 5.93932 6.05147 6.09487 6.14913 6.21911 6.30692 6.31495 6.35833 6.47145 6.55018 6.70825 6.78875 6.86268 6.87658 6.98356 7.12118 7.57184 7.69601 7.79993 7.94948 8.53125 8.60880 9.02628 9.55826 11.05885 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.008667 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.775384 B = 3229.899630 C = 5402.109162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.149 4.149 6 C 0.065 3.935 7 N -0.509 5.509 8 C 0.157 3.843 9 C -0.509 4.509 10 H 0.086 0.914 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.867 3.133 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.137 3.863 18 C 0.196 3.804 19 N -0.379 5.379 20 O 0.073 5.927 21 C 0.160 3.840 22 C -0.057 4.057 23 N -0.465 5.465 24 H 0.041 0.959 25 H 0.107 0.893 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.022 0.978 37 H 0.030 0.970 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 4.840 15.018 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.139 4.139 3 C -0.101 4.101 4 C -0.158 4.158 5 C -0.206 4.206 6 C -0.062 4.062 7 N -0.234 5.234 8 C 0.030 3.970 9 C -0.547 4.547 10 H 0.104 0.896 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.694 3.306 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.189 1.189 17 C 0.007 3.993 18 C -0.077 4.077 19 N -0.087 5.087 20 O 0.014 5.986 21 C -0.061 4.061 22 C -0.115 4.115 23 N -0.200 5.200 24 H 0.061 0.939 25 H 0.125 0.875 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.003 0.997 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.830 4.664 14.550 15.539 hybrid contribution -0.203 1.442 -0.934 1.730 sum -3.032 6.107 13.616 15.228 Atomic orbital electron populations 1.22023 0.94661 0.98582 1.05643 1.21390 0.97439 0.94911 1.00157 1.21262 0.93849 0.97440 0.97555 1.21546 0.96258 1.00778 0.97249 1.21785 1.00236 1.01352 0.97232 1.22172 0.86756 0.98676 0.98624 1.62163 1.11700 1.38740 1.10760 1.20300 0.95988 0.96717 0.83950 1.20998 1.42466 0.99586 0.91696 0.89642 1.24855 0.95107 0.95710 0.97311 1.69885 1.48499 1.28083 1.07143 0.86969 0.79943 0.83980 0.79671 1.20348 1.21162 1.18906 1.20350 0.83418 0.95080 1.00435 1.25642 0.99863 0.93376 0.88868 1.74683 0.89702 1.22885 1.21457 1.85267 1.24421 1.51039 1.37899 1.28760 0.96456 0.92766 0.88121 1.20288 0.89758 1.02386 0.99073 1.71842 1.00653 1.21665 1.25817 0.93944 0.87477 0.95960 0.92441 0.93970 0.92030 0.91824 0.92598 0.92535 0.93435 0.93126 0.88271 0.95949 0.95178 0.99717 0.92684 0.93177 0.88544 0.88594 0.87941 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.96 37.15 0.33 -2.49 16 2 C -0.10 -1.69 5.29 -26.73 -0.14 -1.84 16 3 C -0.08 -1.27 2.03 -90.62 -0.18 -1.45 16 4 C -0.12 -1.60 5.39 -26.73 -0.14 -1.74 16 5 C -0.15 -1.71 9.56 37.16 0.36 -1.35 16 6 C 0.07 1.20 4.19 -3.82 -0.02 1.19 16 7 N -0.51 -10.32 1.11 -237.52 -0.26 -10.59 16 8 C 0.16 3.83 3.64 -4.98 -0.02 3.82 16 9 C -0.51 -14.26 8.36 -34.44 -0.29 -14.55 16 10 H 0.09 2.57 7.36 -52.49 -0.39 2.18 16 11 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 13 Si 0.87 22.16 27.37 -169.99 -4.65 17.51 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -6.78 6.69 56.52 0.38 -6.40 16 17 C 0.14 2.44 5.42 -4.98 -0.03 2.42 16 18 C 0.20 3.65 6.86 -156.37 -1.07 2.58 16 19 N -0.38 -7.39 11.23 30.89 0.35 -7.04 16 20 O 0.07 1.21 11.31 18.11 0.20 1.41 16 21 C 0.16 2.25 8.51 -13.06 -0.11 2.13 16 22 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 23 N -0.47 -7.85 11.55 -9.88 -0.11 -7.97 16 24 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.11 2.38 5.20 -51.93 -0.27 2.11 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16 29 H 0.06 0.93 6.62 -51.93 -0.34 0.58 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.06 0.65 6.74 -51.93 -0.35 0.30 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 2.11 6.49 -51.93 -0.34 1.78 16 36 H 0.02 0.39 7.99 -51.93 -0.41 -0.03 16 37 H 0.03 0.79 5.79 -51.93 -0.30 0.49 16 38 H -0.01 -0.37 7.28 -51.93 -0.38 -0.75 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.05 0.88 8.12 -51.92 -0.42 0.46 16 41 H 0.10 1.52 6.57 -51.93 -0.34 1.18 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -32.20 345.89 -6.79 -38.98 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.26 Total: -1.52 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.03 Total: -9.35 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.74 Total: -52.24 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.65 Total: 17.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.20 -6.79 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173550298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.556 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds