Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47392 * 2 1 4 4 C 1.53000 * 109.47462 * 173.44562 * 3 2 1 5 5 C 1.53000 * 109.47093 * 185.00305 * 4 3 2 6 6 C 1.53001 * 109.47413 * 293.44779 * 3 2 1 7 7 N 1.46902 * 109.47027 * 67.30547 * 6 3 2 8 8 C 1.46899 * 111.00065 * 86.39722 * 7 6 3 9 9 C 1.50703 * 109.47139 * 284.05559 * 8 7 6 10 10 H 1.07998 * 120.00067 * 359.78580 * 9 8 7 11 11 C 1.37880 * 120.00172 * 179.78280 * 9 8 7 12 12 N 1.31516 * 119.99794 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46786 * 60.00608 * 13 11 9 15 15 H 1.48504 * 109.46892 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47178 * 300.00106 * 13 11 9 17 17 C 1.46896 * 111.00011 * 210.35022 * 7 6 3 18 18 C 1.50699 * 109.47207 * 71.95893 * 17 7 6 19 19 N 1.30271 * 126.28121 * 94.69680 * 18 17 7 20 20 N 1.28672 * 109.38055 * 179.97438 * 19 18 17 21 21 C 1.30269 * 109.37797 * 359.97438 * 20 19 18 22 22 C 1.50702 * 126.28001 * 179.97438 * 21 20 19 23 23 O 1.34354 * 126.28347 * 274.38583 * 18 17 7 24 24 H 1.09008 * 109.46819 * 304.23766 * 1 2 3 25 25 H 1.09001 * 109.47259 * 64.23450 * 1 2 3 26 26 H 1.08993 * 109.47173 * 184.23858 * 1 2 3 27 27 H 1.09001 * 109.46874 * 240.00792 * 2 1 3 28 28 H 1.08992 * 109.47437 * 120.00307 * 2 1 3 29 29 H 1.09006 * 109.47042 * 53.44314 * 3 2 1 30 30 H 1.09001 * 109.46762 * 305.00299 * 4 3 2 31 31 H 1.09003 * 109.46899 * 65.00125 * 4 3 2 32 32 H 1.09001 * 109.47311 * 299.99657 * 5 4 3 33 33 H 1.08993 * 109.47284 * 59.99997 * 5 4 3 34 34 H 1.09007 * 109.46710 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47296 * 307.30891 * 6 3 2 36 36 H 1.09001 * 109.47583 * 187.30258 * 6 3 2 37 37 H 1.08997 * 109.47152 * 44.05271 * 8 7 6 38 38 H 1.09002 * 109.47571 * 164.05758 * 8 7 6 39 39 H 0.96998 * 119.99335 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.47177 * 191.95779 * 17 7 6 41 41 H 1.08998 * 109.47445 * 311.95742 * 17 7 6 42 42 H 1.09005 * 109.47022 * 89.97802 * 22 21 20 43 43 H 1.09001 * 109.47303 * 209.97914 * 22 21 20 44 44 H 1.09002 * 109.47273 * 329.98253 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5612 1.4456 0.1647 5 6 4.0576 2.8874 0.2898 6 6 1.6690 2.1147 -1.3234 7 7 0.2102 2.2693 -1.4019 8 6 -0.2226 3.5158 -0.7562 9 6 -0.1778 3.3480 0.7407 10 1 0.1370 2.4082 1.1696 11 6 -0.5387 4.3944 1.5629 12 7 -0.9225 5.5388 1.0407 13 14 -0.4839 4.1861 3.4185 14 1 0.9026 3.8610 3.8393 15 1 -0.9169 5.4477 4.0712 16 1 -1.3944 3.0838 3.8200 17 6 -0.2512 2.2105 -2.7953 18 6 -0.1415 0.7953 -3.3014 19 7 -1.0903 -0.0975 -3.3059 20 7 -0.6429 -1.1934 -3.8105 21 6 0.6062 -1.0367 -4.1455 22 6 1.4994 -2.0779 -4.7695 23 8 0.9509 0.2245 -3.8361 24 1 -0.3633 0.5782 0.8497 25 1 -0.3634 0.4467 -0.9255 26 1 -0.3633 -1.0248 0.0759 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5841 1.9891 0.8255 30 1 3.8305 0.8893 1.0625 31 1 4.0217 0.9769 -0.7051 32 1 3.7882 3.4437 -0.6080 33 1 3.5971 3.3561 1.1595 34 1 5.1413 2.8896 0.4076 35 1 2.0141 1.4983 -2.1534 36 1 2.1416 3.0954 -1.3779 37 1 0.4425 4.3275 -1.0509 38 1 -1.2413 3.7505 -1.0652 39 1 -1.1768 6.2747 1.6191 40 1 -1.2902 2.5357 -2.8480 41 1 0.3661 2.8652 -3.4104 42 1 1.4245 -2.0173 -5.8553 43 1 2.5312 -1.9005 -4.4660 44 1 1.1885 -3.0688 -4.4386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173553273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = 35.624469 kcal Electronic energy + Delta-G solvation = -23905.121265 eV Core-core repulsion = 20666.717510 eV Total energy + Delta-G solvation = -3238.403755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.95996 -38.25934 -35.88861 -35.04426 -33.08198 -32.34510 -31.41699 -29.45429 -27.57313 -26.94558 -25.24016 -23.95819 -22.44534 -22.05013 -21.33642 -20.68834 -19.36502 -17.29006 -16.92629 -16.39063 -15.47917 -15.05303 -14.63002 -14.55348 -14.09636 -14.03470 -13.35499 -13.30644 -13.23134 -12.88325 -12.48810 -12.33634 -12.16200 -11.97396 -11.86942 -11.66213 -11.56706 -11.21311 -11.02480 -10.89338 -10.75634 -10.73230 -10.56179 -10.49360 -10.22942 -9.96440 -9.77779 -9.55504 -9.19979 -8.86564 -8.42522 -7.33345 -6.06773 -4.06688 1.38426 2.47835 2.65238 3.31430 3.36148 3.39322 4.01274 4.37925 4.57259 4.74143 4.94996 5.11737 5.29059 5.30622 5.34137 5.40020 5.52025 5.59192 5.61896 5.76452 5.81018 5.83611 5.91888 5.95747 6.03450 6.10214 6.19824 6.27869 6.35645 6.46200 6.59855 6.64553 6.71723 6.87912 6.95368 7.07947 7.12820 7.23249 7.57834 7.79917 7.92123 8.04019 8.39010 8.58590 8.99725 9.56648 11.03799 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.005861 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.193825 B = 4776.361730 C = 5337.934584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C -0.099 4.099 4 C -0.115 4.115 5 C -0.151 4.151 6 C 0.069 3.931 7 N -0.521 5.521 8 C 0.195 3.805 9 C -0.506 4.506 10 H 0.079 0.921 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.275 1.275 17 C 0.139 3.861 18 C 0.194 3.806 19 N -0.280 5.280 20 N -0.289 5.289 21 C 0.142 3.858 22 C -0.054 4.054 23 O -0.228 6.228 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.016 0.984 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.000 1.000 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.273 -9.492 -8.949 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.118 4.118 4 C -0.153 4.153 5 C -0.208 4.208 6 C -0.059 4.059 7 N -0.246 5.246 8 C 0.071 3.929 9 C -0.544 4.544 10 H 0.097 0.903 11 C -0.143 4.143 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.201 1.201 17 C 0.009 3.991 18 C -0.017 4.017 19 N -0.126 5.126 20 N -0.137 5.137 21 C -0.069 4.069 22 C -0.112 4.112 23 O -0.107 6.107 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.832 -10.219 -8.478 14.933 hybrid contribution 1.530 1.129 0.460 1.956 sum 8.361 -9.090 -8.019 14.726 Atomic orbital electron populations 1.22141 0.94521 0.98488 1.06270 1.21352 0.97545 0.95862 0.98858 1.21609 0.93521 0.96384 1.00263 1.21528 0.96520 0.96759 1.00490 1.21795 0.99344 0.97025 1.02630 1.22177 0.87758 0.98987 0.96975 1.62356 1.11817 1.41144 1.09325 1.19897 0.95734 0.82592 0.94692 1.21294 1.44167 0.98895 0.90015 0.90305 1.24952 0.95456 0.95233 0.98702 1.69935 1.45336 1.03133 1.35303 0.86663 0.78562 0.77386 0.85505 1.20216 1.21418 1.20098 1.20666 1.03955 0.82232 0.92201 1.28266 0.79485 0.99419 0.94574 1.74407 1.26102 0.95924 1.16200 1.74350 1.07578 1.18336 1.13440 1.27821 0.94256 0.84037 1.00772 1.20247 0.96969 0.93429 1.00514 1.84784 1.40388 1.24740 1.60779 0.92007 0.88372 0.96467 0.94872 0.93971 0.86688 0.92636 0.93397 0.92635 0.92126 0.93942 0.93601 0.93828 0.98206 0.94964 0.92885 0.86311 0.92291 0.88840 0.89245 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.95 37.16 0.33 -2.75 16 2 C -0.10 -1.73 5.39 -26.73 -0.14 -1.88 16 3 C -0.10 -1.78 1.88 -90.62 -0.17 -1.95 16 4 C -0.11 -1.75 5.40 -26.73 -0.14 -1.89 16 5 C -0.15 -2.28 9.68 37.16 0.36 -1.92 16 6 C 0.07 1.24 4.10 -3.82 -0.02 1.22 16 7 N -0.52 -10.12 1.40 -237.52 -0.33 -10.45 16 8 C 0.19 4.54 4.75 -4.97 -0.02 4.52 16 9 C -0.51 -12.87 8.03 -34.44 -0.28 -13.15 16 10 H 0.08 1.98 3.51 -52.49 -0.18 1.80 16 11 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -25.22 13.29 55.43 0.74 -24.49 16 13 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.14 2.35 5.48 -4.98 -0.03 2.32 16 18 C 0.19 3.30 6.05 -12.94 -0.08 3.22 16 19 N -0.28 -5.19 11.89 32.55 0.39 -4.80 16 20 N -0.29 -4.92 12.22 32.55 0.40 -4.52 16 21 C 0.14 1.98 8.48 -12.94 -0.11 1.87 16 22 C -0.05 -0.43 10.51 36.01 0.38 -0.05 16 23 O -0.23 -3.53 9.80 5.42 0.05 -3.47 16 24 H 0.06 1.32 6.49 -51.92 -0.34 0.98 16 25 H 0.10 2.00 3.55 -51.93 -0.18 1.81 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.12 2.42 4.53 -51.93 -0.24 2.19 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.86 6.42 -51.93 -0.33 0.52 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.78 6.20 -51.93 -0.32 0.46 16 36 H 0.04 0.81 5.63 -51.93 -0.29 0.52 16 37 H 0.00 0.00 7.63 -51.93 -0.40 -0.39 16 38 H 0.03 0.80 7.64 -51.93 -0.40 0.41 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.12 1.96 7.68 -51.93 -0.40 1.56 16 41 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -29.33 340.65 -5.52 -34.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.86 Total: 0.87 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.02 Total: -8.98 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 1.19 Total: -44.27 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.05 Total: -3.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.33 -5.52 -34.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173553273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.477 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds