Wall clock time and date at job start Tue Mar 31 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.50040 * 2 1 4 4 C 1.53047 * 109.48730 * 239.94807 * 2 1 3 5 5 N 1.46952 * 109.36464 * 181.62977 * 4 2 1 6 6 C 1.46903 * 110.99988 * 183.18779 * 5 4 2 7 7 C 1.53004 * 109.47166 * 182.21473 * 6 5 4 8 8 H 1.09000 * 109.46685 * 56.18183 * 7 6 5 9 9 C 1.47193 * 109.47170 * 296.18409 * 7 6 5 10 10 N 5.59254 * 153.59507 * 293.15287 * 2 1 3 11 11 C 1.52998 * 109.47171 * 176.17946 * 7 6 5 12 12 C 1.50696 * 109.47166 * 185.00291 * 11 7 6 13 13 H 1.08004 * 119.99886 * 0.02562 * 12 11 7 14 14 C 1.37878 * 120.00026 * 180.02562 * 12 11 7 15 15 N 1.31519 * 119.99704 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00164 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47241 * 89.99911 * 16 14 12 18 18 H 1.48500 * 109.47462 * 210.00118 * 16 14 12 19 19 H 1.48503 * 109.47051 * 330.00331 * 16 14 12 20 20 C 1.46956 * 110.88008 * 59.32031 * 5 4 2 21 21 C 1.53047 * 109.36476 * 300.67962 * 20 5 4 22 22 N 1.46952 * 109.36464 * 58.40133 * 21 20 5 23 23 C 1.46903 * 111.00171 * 176.81590 * 22 21 20 24 24 C 1.53003 * 109.46574 * 286.62565 * 23 22 21 25 25 O 1.42900 * 109.47356 * 66.89409 * 24 23 22 26 26 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46880 * 300.05095 * 1 2 3 28 28 H 1.08997 * 109.47242 * 60.05335 * 1 2 3 29 29 H 1.09005 * 109.48856 * 301.59968 * 4 2 1 30 30 H 1.09005 * 109.48728 * 61.63611 * 4 2 1 31 31 H 1.08996 * 109.47058 * 302.21611 * 6 5 4 32 32 H 1.09005 * 109.47239 * 62.22025 * 6 5 4 33 33 H 1.09002 * 109.47387 * 305.00413 * 11 7 6 34 34 H 1.09002 * 109.46984 * 65.00149 * 11 7 6 35 35 H 0.97003 * 119.99582 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.48861 * 60.65049 * 20 5 4 37 37 H 1.08998 * 109.48421 * 180.71166 * 20 5 4 38 38 H 1.08994 * 109.48980 * 178.37305 * 21 20 5 39 39 H 1.09005 * 109.48830 * 298.41132 * 21 20 5 40 40 H 1.09000 * 109.47114 * 46.62483 * 23 22 21 41 41 H 1.08995 * 109.47148 * 166.63033 * 23 22 21 42 42 H 1.09004 * 109.47115 * 186.89049 * 24 23 22 43 43 H 1.08995 * 109.47562 * 306.89352 * 24 23 22 44 44 H 0.96697 * 114.00277 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7225 -1.2488 5 7 3.5096 -0.7552 -1.2265 6 6 4.0410 -1.3751 -2.4478 7 6 5.5673 -1.4410 -2.3636 8 1 5.8585 -1.9785 -1.4611 9 6 6.1158 -0.0758 -2.3202 10 7 6.5391 0.9779 -2.2868 11 6 6.1146 -2.1718 -3.5913 12 6 7.6049 -2.3453 -3.4497 13 1 8.1109 -1.9720 -2.5716 14 6 8.3223 -2.9805 -4.4411 15 7 9.6230 -3.1314 -4.3177 16 14 7.4470 -3.6267 -5.9594 17 1 7.4182 -2.5695 -7.0018 18 1 8.1699 -4.8151 -6.4795 19 1 6.0568 -4.0093 -5.6041 20 6 3.9999 -1.4490 -0.0275 21 6 3.4894 -0.7265 1.2214 22 7 2.0204 -0.6939 1.1991 23 6 1.4889 -0.0739 2.4202 24 6 1.6523 -1.0402 3.5952 25 8 3.0419 -1.2139 3.8795 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5146 0.8895 28 1 -0.3633 0.5130 -0.8904 29 1 1.6543 -1.7417 -1.2628 30 1 1.7017 -0.1931 -2.1394 31 1 3.6387 -2.3831 -2.5482 32 1 3.7503 -0.7799 -3.3135 33 1 5.6411 -3.1502 -3.6729 34 1 5.9002 -1.5886 -4.4869 35 1 10.1277 -3.5779 -5.0153 36 1 3.6360 -2.4765 -0.0275 37 1 5.0899 -1.4490 -0.0276 38 1 3.8279 -1.2561 2.1118 39 1 3.8759 0.2926 1.2355 40 1 2.0351 0.8463 2.6279 41 1 0.4322 0.1541 2.2816 42 1 1.1501 -0.6332 4.4729 43 1 1.2110 -2.0030 3.3380 44 1 3.2207 -1.8152 4.6154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187694160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:04 Heat of formation + Delta-G solvation = -11.570848 kcal Electronic energy + Delta-G solvation = -22680.193425 eV Core-core repulsion = 19439.743128 eV Total energy + Delta-G solvation = -3240.450297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79006 -37.64309 -36.55994 -35.01504 -33.50241 -32.46737 -31.81442 -29.99733 -27.50469 -27.25808 -24.95066 -23.25002 -22.13635 -21.41491 -21.08271 -19.68119 -17.80306 -16.87407 -16.67790 -16.35775 -15.45613 -15.28747 -15.20300 -14.76247 -14.45435 -14.13223 -13.53592 -13.45091 -13.30978 -13.02280 -12.76495 -12.46883 -12.23243 -12.10082 -11.96849 -11.75675 -11.73720 -11.56898 -11.34161 -11.17401 -11.06308 -10.94288 -10.65050 -10.58870 -10.13648 -10.01498 -9.91053 -9.69080 -9.29088 -8.59868 -8.42186 -8.14787 -6.08881 -4.09381 3.28411 3.35988 3.36241 3.71742 3.72442 3.80210 3.97099 4.05796 4.39955 4.70260 4.80195 4.83377 4.96917 5.01883 5.12298 5.13273 5.26060 5.31681 5.33998 5.39243 5.45106 5.56272 5.58066 5.60084 5.66936 5.76920 5.85482 5.91261 5.93619 6.02977 6.18749 6.23948 6.26123 6.38112 6.93972 6.96258 6.99669 7.12284 7.20972 7.24158 7.41063 7.65665 8.42606 8.57376 8.94746 9.51002 11.04252 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024460 B = 0.003785 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.471029 B = 7395.375130 C = 7774.873757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.047 0.953 4 C 0.066 3.934 5 N -0.544 5.544 6 C 0.061 3.939 7 C 0.016 3.984 8 H 0.107 0.893 9 C 0.252 3.748 10 N -0.470 5.470 11 C -0.005 4.005 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.263 1.263 20 C 0.049 3.951 21 C 0.053 3.947 22 N -0.531 5.531 23 C 0.047 3.953 24 C 0.082 3.918 25 O -0.567 6.567 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.619 1.323 13.413 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.065 0.935 4 C -0.063 4.063 5 N -0.268 5.268 6 C -0.067 4.067 7 C -0.006 4.006 8 H 0.125 0.875 9 C -0.065 4.065 10 N -0.147 5.147 11 C -0.044 4.044 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.187 1.187 20 C -0.079 4.079 21 C -0.074 4.074 22 N -0.257 5.257 23 C -0.081 4.081 24 C 0.004 3.996 25 O -0.373 6.373 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -20.757 3.262 12.871 24.640 hybrid contribution -0.461 -1.124 -0.455 1.297 sum -21.217 2.138 12.416 24.676 Atomic orbital electron populations 1.21911 0.94391 1.02525 1.01649 1.21672 0.94695 0.96346 0.90198 0.93469 1.22117 0.87680 0.99468 0.97000 1.62206 1.07842 1.54241 1.02531 1.22243 0.93726 0.98353 0.92406 1.19079 0.92079 0.85640 1.03825 0.87515 1.28687 0.91837 0.94082 0.91884 1.80993 1.10298 1.13384 1.10015 1.19640 0.97855 0.95400 0.91465 1.21028 0.90039 1.38280 1.07155 0.90790 1.24987 0.94684 0.95334 0.98091 1.69912 1.06308 1.42940 1.34368 0.86814 0.80325 0.78810 0.83575 1.20249 1.21271 1.18738 1.22327 1.00624 0.95923 0.89007 1.22477 0.85976 1.00061 0.98893 1.62236 1.09614 1.52812 1.00999 1.22272 1.00633 0.95654 0.89570 1.22207 0.82433 0.99077 0.95932 1.86525 1.24591 1.70189 1.55996 0.91752 0.92437 0.92013 0.93930 0.90537 0.92928 0.90187 0.94519 0.96082 0.92584 0.93795 0.89548 0.87358 0.94699 0.94136 0.89164 0.93685 0.92787 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.93 37.16 0.33 -0.85 16 2 C 0.08 0.86 2.56 -67.65 -0.17 0.69 16 3 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.07 0.77 4.90 -3.77 -0.02 0.75 16 5 N -0.54 -7.67 4.47 -234.47 -1.05 -8.72 16 6 C 0.06 0.91 4.47 -3.82 -0.02 0.89 16 7 C 0.02 0.29 1.81 -93.41 -0.17 0.12 16 8 H 0.11 1.89 6.03 -51.93 -0.31 1.58 16 9 C 0.25 5.39 13.64 -20.76 -0.28 5.10 16 10 N -0.47 -11.00 18.54 42.16 0.78 -10.22 16 11 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 12 C -0.53 -14.38 9.15 -34.44 -0.32 -14.69 16 13 H 0.07 2.22 7.84 -52.48 -0.41 1.80 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 16 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 20 C 0.05 0.67 5.18 -3.77 -0.02 0.65 16 21 C 0.05 0.69 5.28 -3.77 -0.02 0.67 16 22 N -0.53 -5.91 4.47 -226.49 -1.01 -6.92 16 23 C 0.05 0.43 5.37 -3.82 -0.02 0.41 16 24 C 0.08 0.63 7.34 37.16 0.27 0.90 16 25 O -0.57 -4.98 10.65 -35.23 -0.38 -5.36 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.40 6.02 -51.93 -0.31 0.09 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.76 7.20 -51.93 -0.37 0.38 16 34 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.27 5.94 -51.93 -0.31 0.96 16 38 H 0.11 1.38 5.23 -51.93 -0.27 1.11 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.42 8.03 -51.93 -0.42 0.01 16 41 H 0.09 0.67 5.46 -51.93 -0.28 0.39 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.37 1.72 9.12 45.56 0.42 2.13 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -32.91 344.23 -7.48 -40.39 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.49 Total: -0.38 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.63 Total: -3.65 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.51 Total: -52.36 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.38 Total: -5.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.91 -7.48 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187694160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.816 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds