Wall clock time and date at job start Tue Mar 31 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.48390 * 2 1 4 4 C 1.53044 * 109.49236 * 120.04359 * 2 1 3 5 5 N 1.46951 * 109.36523 * 178.39140 * 4 2 1 6 6 C 1.46908 * 110.99974 * 176.81344 * 5 4 2 7 7 C 1.52996 * 109.47022 * 294.12836 * 6 5 4 8 8 H 1.08997 * 109.47474 * 56.83899 * 7 6 5 9 9 C 1.47211 * 109.46971 * 296.83849 * 7 6 5 10 10 N 5.11684 * 131.22111 * 61.87479 * 2 1 3 11 11 C 1.52996 * 109.46951 * 176.84219 * 7 6 5 12 12 C 1.50703 * 109.46946 * 184.99882 * 11 7 6 13 13 H 1.07998 * 120.00275 * 359.97438 * 12 11 7 14 14 C 1.37884 * 119.99709 * 180.02562 * 12 11 7 15 15 N 1.31505 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99653 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47437 * 89.99776 * 16 14 12 18 18 H 1.48497 * 109.46817 * 210.00141 * 16 14 12 19 19 H 1.48508 * 109.47191 * 329.99727 * 16 14 12 20 20 C 1.46959 * 110.88319 * 300.67731 * 5 4 2 21 21 C 1.53054 * 109.36105 * 59.32013 * 20 5 4 22 22 N 1.46957 * 109.50412 * 239.94700 * 2 1 3 23 23 C 1.46898 * 111.00011 * 56.83220 * 22 2 1 24 24 C 1.52993 * 109.47250 * 189.99710 * 23 22 2 25 25 O 1.42897 * 109.47220 * 65.00160 * 24 23 22 26 26 H 1.09007 * 109.46814 * 299.95260 * 1 2 3 27 27 H 1.08998 * 109.47098 * 59.95743 * 1 2 3 28 28 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.49056 * 58.42374 * 4 2 1 30 30 H 1.09004 * 109.50828 * 298.37035 * 4 2 1 31 31 H 1.08994 * 109.46905 * 54.13046 * 6 5 4 32 32 H 1.09006 * 109.46867 * 174.12367 * 6 5 4 33 33 H 1.08996 * 109.47261 * 304.99471 * 11 7 6 34 34 H 1.09001 * 109.47372 * 65.00010 * 11 7 6 35 35 H 0.97005 * 120.00292 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.49281 * 179.28616 * 20 5 4 37 37 H 1.08998 * 109.48718 * 299.36034 * 20 5 4 38 38 H 1.09004 * 109.49140 * 181.63208 * 21 20 5 39 39 H 1.09003 * 109.48550 * 61.56802 * 21 20 5 40 40 H 1.08997 * 109.47708 * 309.99831 * 23 22 2 41 41 H 1.09006 * 109.47372 * 69.99557 * 23 22 2 42 42 H 1.09006 * 109.47504 * 184.99876 * 24 23 22 43 43 H 1.09008 * 109.47148 * 304.99808 * 24 23 22 44 44 H 0.96705 * 114.00111 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7223 1.2489 5 7 3.5097 -0.7545 1.2267 6 6 4.0412 -1.3742 2.4481 7 6 3.7108 -0.4914 3.6532 8 1 2.6329 -0.3394 3.7077 9 6 4.3831 0.8101 3.5071 10 7 4.9019 1.8143 3.3943 11 6 4.1949 -1.1745 4.9337 12 6 3.7617 -0.3656 6.1292 13 1 3.1980 0.5449 5.9896 14 6 4.0861 -0.7874 7.4012 15 7 4.7739 -1.8953 7.5712 16 14 3.5486 0.2149 8.8830 17 1 2.2136 -0.2503 9.3375 18 1 4.5332 0.0421 9.9811 19 1 3.4716 1.6499 8.5085 20 6 4.0005 -1.4482 0.0278 21 6 3.4898 -0.7259 -1.2212 22 7 2.0207 -0.6937 -1.1990 23 6 1.4892 -0.0741 -2.4203 24 6 1.8124 -0.9608 -3.6244 25 8 1.1200 -2.2046 -3.4995 26 1 -0.3633 0.5131 0.8905 27 1 -0.3633 0.5145 -0.8896 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6548 -1.7417 1.2628 30 1 1.7019 -0.1931 2.1396 31 1 3.5896 -2.3570 2.5829 32 1 5.1226 -1.4801 2.3607 33 1 3.7656 -2.1744 4.9968 34 1 5.2825 -1.2464 4.9184 35 1 5.0019 -2.1923 8.4661 36 1 5.0905 -1.4478 0.0279 37 1 3.6368 -2.4757 0.0278 38 1 3.8285 -1.2554 -2.1117 39 1 3.8757 0.2935 -1.2350 40 1 0.4087 0.0372 -2.3307 41 1 1.9452 0.9064 -2.5583 42 1 1.4972 -0.4599 -4.5397 43 1 2.8862 -1.1449 -3.6623 44 1 1.2790 -2.8184 -4.2297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187694177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:06 Heat of formation + Delta-G solvation = -17.666424 kcal Electronic energy + Delta-G solvation = -22561.592509 eV Core-core repulsion = 19320.877887 eV Total energy + Delta-G solvation = -3240.714621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76463 -37.51764 -36.46641 -35.01627 -33.52440 -32.58244 -31.78108 -29.65683 -27.27019 -26.93064 -25.38097 -22.97894 -22.12238 -21.62230 -21.22252 -19.65857 -17.64930 -16.83272 -16.53858 -16.27112 -15.63566 -15.01967 -14.83944 -14.62368 -14.47339 -14.41170 -13.77043 -13.31978 -13.21700 -12.95917 -12.71030 -12.30824 -12.25957 -12.03835 -11.93400 -11.85487 -11.50021 -11.37399 -11.18043 -11.06370 -11.02241 -10.80259 -10.64482 -10.56871 -10.42806 -10.13356 -10.06620 -9.50939 -9.19896 -8.44460 -8.39249 -8.12879 -6.08152 -4.11169 3.30202 3.37061 3.41842 3.68943 3.76088 3.86153 4.01218 4.05355 4.42658 4.72263 4.79386 4.91216 4.98404 4.98775 5.08589 5.18596 5.28429 5.30004 5.37198 5.40065 5.43080 5.56589 5.60096 5.64832 5.70525 5.76069 5.86877 5.93112 5.99125 6.05621 6.09370 6.24118 6.39950 6.52963 6.93234 6.97539 7.23090 7.24683 7.44877 7.44982 7.54921 7.87117 8.24922 8.61797 8.93523 9.54173 11.02774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.003415 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.112169 B = 8196.629660 C = 8319.174515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.047 0.953 4 C 0.059 3.941 5 N -0.544 5.544 6 C 0.064 3.936 7 C 0.010 3.990 8 H 0.099 0.901 9 C 0.258 3.742 10 N -0.482 5.482 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.059 3.941 21 C 0.056 3.944 22 N -0.524 5.524 23 C 0.048 3.952 24 C 0.081 3.919 25 O -0.557 6.557 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -1.618 -21.948 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.065 0.935 4 C -0.069 4.069 5 N -0.269 5.269 6 C -0.065 4.065 7 C -0.012 4.012 8 H 0.117 0.883 9 C -0.059 4.059 10 N -0.159 5.159 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.069 4.069 21 C -0.072 4.072 22 N -0.250 5.250 23 C -0.080 4.080 24 C 0.002 3.998 25 O -0.361 6.361 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.321 0.076 -21.421 22.334 hybrid contribution -0.144 -0.079 0.422 0.453 sum -6.465 -0.003 -20.999 21.971 Atomic orbital electron populations 1.21885 0.94081 1.02809 1.01644 1.21663 0.95096 0.96018 0.89704 0.93520 1.22254 0.87456 0.99929 0.97269 1.62190 1.08399 1.54025 1.02269 1.22215 1.00741 0.95807 0.87715 1.19257 0.99388 0.85305 0.97273 0.88317 1.28841 0.92664 0.94099 0.90275 1.80966 1.10666 1.12648 1.11583 1.19168 0.97476 0.96001 0.88053 1.21141 1.35585 1.08790 0.90855 0.92531 1.24950 0.94894 0.95037 0.99074 1.69935 1.38535 1.22090 1.22468 0.86599 0.78436 0.80709 0.82392 1.20466 1.21160 1.19852 1.22091 0.99582 0.96021 0.89190 1.22200 0.87462 0.99573 0.97977 1.62146 1.08015 1.53516 1.01292 1.22227 1.01783 0.94487 0.89513 1.22201 0.95516 0.85495 0.96545 1.86624 1.72075 1.27509 1.49931 0.91838 0.92578 0.91544 0.93560 0.89672 0.92739 0.90219 0.94444 0.95574 0.92807 0.90438 0.93816 0.90563 0.94288 0.89391 0.93687 0.93749 0.93711 0.78240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.89 37.16 0.33 -1.17 16 2 C 0.08 1.00 2.56 -67.66 -0.17 0.83 16 3 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.06 0.78 4.69 -3.77 -0.02 0.77 16 5 N -0.54 -7.75 4.36 -234.46 -1.02 -8.77 16 6 C 0.06 0.98 4.34 -3.82 -0.02 0.97 16 7 C 0.01 0.18 2.11 -93.41 -0.20 -0.01 16 8 H 0.10 1.75 6.34 -51.93 -0.33 1.43 16 9 C 0.26 5.50 13.62 -20.76 -0.28 5.21 16 10 N -0.48 -11.12 18.54 42.15 0.78 -10.34 16 11 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 12 C -0.53 -14.10 8.60 -34.44 -0.30 -14.39 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.06 0.73 5.61 -3.76 -0.02 0.71 16 21 C 0.06 0.62 5.42 -3.76 -0.02 0.60 16 22 N -0.52 -5.97 4.47 -226.49 -1.01 -6.98 16 23 C 0.05 0.45 5.11 -3.83 -0.02 0.43 16 24 C 0.08 0.64 7.11 37.15 0.26 0.90 16 25 O -0.56 -5.12 13.61 -35.23 -0.48 -5.60 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.52 6.15 -51.93 -0.32 0.20 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.16 6.27 -51.93 -0.33 0.84 16 31 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.73 6.25 -51.93 -0.32 0.41 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.84 5.73 -51.93 -0.30 0.54 16 41 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.04 0.33 6.28 -51.92 -0.33 0.00 16 44 H 0.37 1.74 9.12 45.56 0.42 2.15 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -31.95 350.74 -7.93 -39.88 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.53 Total: -2.04 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.67 Total: -2.91 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.52 Total: -51.02 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.48 Total: -5.60 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.95 -7.93 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187694177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.214 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds