Wall clock time and date at job start Tue Mar 31 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08997 * 109.47597 * 2 1 4 4 O 1.42902 * 109.47315 * 240.00438 * 2 1 3 5 5 C 1.53002 * 109.47578 * 120.00315 * 2 1 3 6 6 N 1.46892 * 109.47441 * 184.09177 * 5 2 1 7 7 C 1.46961 * 111.00313 * 284.24287 * 6 5 2 8 8 C 1.53047 * 109.36584 * 183.18924 * 7 6 5 9 9 N 1.46965 * 109.36316 * 301.59526 * 8 7 6 10 10 C 1.46901 * 110.99576 * 183.18648 * 9 8 7 11 11 C 1.53004 * 109.46825 * 75.71958 * 10 9 8 12 12 H 1.09002 * 109.46609 * 305.71212 * 11 10 9 13 13 C 1.47193 * 109.47274 * 65.71316 * 11 10 9 14 14 N 6.72018 * 152.13027 * 286.51114 * 2 1 3 15 15 C 1.53003 * 109.46873 * 185.71414 * 11 10 9 16 16 C 1.50699 * 109.47006 * 174.99671 * 15 11 10 17 17 H 1.08004 * 120.00297 * 0.02562 * 16 15 11 18 18 C 1.37874 * 120.00045 * 179.72110 * 16 15 11 19 19 N 1.31514 * 119.99947 * 0.27915 * 18 16 15 20 20 Si 1.86803 * 120.00069 * 180.27788 * 18 16 15 21 21 H 1.48500 * 109.47180 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46996 * 210.00183 * 20 18 16 23 23 H 1.48505 * 109.47112 * 329.99875 * 20 18 16 24 24 C 1.46955 * 110.87674 * 59.32449 * 9 8 7 25 25 C 1.46961 * 111.00202 * 48.03956 * 6 5 2 26 26 H 1.09001 * 109.47108 * 299.99498 * 1 2 3 27 27 H 1.08998 * 109.47184 * 59.99743 * 1 2 3 28 28 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 29 29 H 0.96703 * 113.99747 * 300.00339 * 4 2 1 30 30 H 1.08999 * 109.46479 * 64.09144 * 5 2 1 31 31 H 1.08999 * 109.46853 * 304.09380 * 5 2 1 32 32 H 1.09003 * 109.48925 * 63.22249 * 7 6 5 33 33 H 1.08997 * 109.50463 * 303.16523 * 7 6 5 34 34 H 1.09001 * 109.48586 * 181.63255 * 8 7 6 35 35 H 1.08997 * 109.50907 * 61.57779 * 8 7 6 36 36 H 1.08998 * 109.47555 * 315.71989 * 10 9 8 37 37 H 1.08999 * 109.46838 * 195.71038 * 10 9 8 38 38 H 1.08995 * 109.47207 * 54.99556 * 15 11 10 39 39 H 1.09004 * 109.46923 * 294.99428 * 15 11 10 40 40 H 0.97003 * 119.99941 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.49247 * 60.64777 * 24 9 8 42 42 H 1.09004 * 109.49021 * 180.70994 * 24 9 8 43 43 H 1.08994 * 109.48872 * 296.78565 * 25 6 5 44 44 H 1.08999 * 109.48179 * 56.82125 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5056 -0.6363 1.2996 7 6 4.1203 -1.5630 0.3388 8 6 5.6432 -1.5020 0.4780 9 7 6.0993 -0.1248 0.2427 10 6 7.5650 -0.0399 0.2932 11 6 8.1538 -0.6148 -0.9966 12 1 7.7722 -1.6240 -1.1519 13 6 7.7682 0.2361 -2.1340 14 7 7.4706 0.8928 -3.0119 15 6 9.6793 -0.6579 -0.8859 16 6 10.2523 -1.3362 -2.1035 17 1 9.5944 -1.6999 -2.8790 18 6 11.6169 -1.4870 -2.2305 19 7 12.4181 -1.0438 -1.2865 20 14 12.3276 -2.3209 -3.7435 21 1 12.5927 -1.3026 -4.7913 22 1 13.5969 -3.0022 -3.3828 23 1 11.3582 -3.3209 -4.2589 24 6 5.4846 0.8018 1.2035 25 6 3.9617 0.7408 1.0643 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7209 -1.5951 -1.2330 30 1 1.7378 -1.7679 1.2131 31 1 1.6180 -0.2516 2.1377 32 1 3.8361 -1.2780 -0.6742 33 1 3.7771 -2.5775 0.5410 34 1 6.1022 -2.1670 -0.2535 35 1 5.9297 -1.8133 1.4826 36 1 7.9328 -0.6100 1.1463 37 1 7.8651 1.0029 0.3963 38 1 9.9632 -1.2142 0.0073 39 1 10.0675 0.3585 -0.8197 40 1 13.3782 -1.1496 -1.3760 41 1 5.7689 0.5168 2.2165 42 1 5.8280 1.8163 1.0010 43 1 3.6756 1.0519 0.0596 44 1 3.5024 1.4058 1.7956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189340153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:54 Heat of formation + Delta-G solvation = -21.452711 kcal Electronic energy + Delta-G solvation = -22590.236670 eV Core-core repulsion = 19349.357864 eV Total energy + Delta-G solvation = -3240.878807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90558 -37.95116 -36.30076 -34.74814 -33.47727 -31.97615 -31.32019 -30.70188 -28.22554 -26.15982 -24.38746 -23.61047 -22.57140 -21.78534 -21.52371 -19.56925 -17.01703 -16.71263 -16.42617 -16.19221 -15.61597 -15.21570 -14.91820 -14.74759 -14.58356 -14.33354 -14.03665 -13.47707 -12.90410 -12.83254 -12.65197 -12.43729 -12.26785 -12.09546 -12.01274 -11.81859 -11.50148 -11.34029 -11.20871 -11.11841 -10.99036 -10.91652 -10.79595 -10.59624 -10.49432 -10.43915 -10.08094 -9.48232 -9.18646 -8.42699 -8.26043 -8.03754 -6.06634 -4.09434 3.32130 3.38523 3.41993 3.78648 3.80601 3.91647 4.03362 4.09398 4.41349 4.44249 4.74683 4.79039 4.91721 4.95971 4.99258 5.18453 5.29926 5.31575 5.31792 5.40037 5.48167 5.51743 5.57144 5.67431 5.72198 5.74699 5.80711 5.87729 5.97270 6.04036 6.08336 6.25305 6.42585 6.56359 6.87504 6.93611 7.26454 7.28272 7.35101 7.46826 7.57444 7.89018 8.27140 8.66875 8.95507 9.55842 11.04330 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030269 B = 0.003434 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.813572 B = 8152.593406 C = 8426.989435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.061 3.939 3 H 0.102 0.898 4 O -0.553 6.553 5 C 0.024 3.976 6 N -0.533 5.533 7 C 0.041 3.959 8 C 0.055 3.945 9 N -0.541 5.541 10 C 0.063 3.937 11 C 0.013 3.987 12 H 0.098 0.902 13 C 0.258 3.742 14 N -0.482 5.482 15 C 0.031 3.969 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.060 3.940 25 C 0.052 3.948 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.372 0.628 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.664 -0.673 9.365 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.001 3.999 3 H 0.120 0.880 4 O -0.358 6.358 5 C -0.105 4.105 6 N -0.256 5.256 7 C -0.087 4.087 8 C -0.073 4.073 9 N -0.265 5.265 10 C -0.066 4.066 11 C -0.009 4.009 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.159 5.159 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.069 4.069 25 C -0.076 4.076 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.219 0.781 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.640 0.905 7.996 23.088 hybrid contribution 0.320 -1.208 -0.291 1.283 sum -21.320 -0.303 7.705 22.672 Atomic orbital electron populations 1.22456 0.96437 1.02455 1.02744 1.22751 0.93226 0.98034 0.85901 0.88001 1.86690 1.76221 1.28953 1.43975 1.22906 0.88860 1.01178 0.97514 1.62442 1.05427 1.06889 1.50848 1.22479 0.94015 0.95601 0.96562 1.22210 0.94591 0.90206 1.00277 1.62149 1.07598 1.06327 1.50457 1.22219 0.85687 1.01865 0.96802 1.19200 1.00361 0.95518 0.85810 0.88371 1.28856 0.90487 0.92933 0.93600 1.80972 1.11918 1.11294 1.11755 1.19172 0.84683 0.98476 0.98405 1.21151 0.91873 1.38343 1.04894 0.92511 1.24953 0.97189 0.95525 0.96325 1.69941 1.03695 1.46388 1.33094 0.86598 0.78571 0.79728 0.83215 1.20660 1.21135 1.19730 1.22105 0.93476 0.97034 0.94264 1.22224 0.95281 0.89652 1.00477 0.91599 0.91886 0.92344 0.78107 0.90639 0.89990 0.90672 0.91235 0.89819 0.94224 0.92610 0.90515 0.94497 0.95644 0.92839 0.94159 0.90503 0.92976 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.53 37.15 0.35 -0.78 16 2 C 0.06 0.50 3.00 -26.74 -0.08 0.42 16 3 H 0.10 0.96 6.13 -51.93 -0.32 0.64 16 4 O -0.55 -5.52 10.40 -35.23 -0.37 -5.88 16 5 C 0.02 0.19 5.30 -3.83 -0.02 0.17 16 6 N -0.53 -5.54 4.92 -234.47 -1.15 -6.69 16 7 C 0.04 0.46 5.18 -3.77 -0.02 0.44 16 8 C 0.06 0.71 5.43 -3.76 -0.02 0.69 16 9 N -0.54 -7.70 4.36 -234.46 -1.02 -8.72 16 10 C 0.06 0.98 4.36 -3.82 -0.02 0.96 16 11 C 0.01 0.25 2.27 -93.41 -0.21 0.04 16 12 H 0.10 1.78 6.72 -51.93 -0.35 1.43 16 13 C 0.26 5.60 13.68 -20.76 -0.28 5.31 16 14 N -0.48 -11.36 18.54 42.15 0.78 -10.58 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.52 -14.16 8.60 -34.44 -0.30 -14.45 16 17 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.06 0.73 5.57 -3.77 -0.02 0.71 16 25 C 0.05 0.57 4.74 -3.77 -0.02 0.55 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.37 2.45 9.05 45.56 0.41 2.86 16 30 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.96 5.54 -51.93 -0.29 0.67 16 33 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 34 H 0.08 1.09 6.70 -51.93 -0.35 0.74 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 37 H 0.08 1.19 7.84 -51.93 -0.41 0.79 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -31.71 349.30 -8.26 -39.97 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.62 Total: -1.12 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.85 Total: -3.70 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.66 Total: -51.04 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.37 Total: -5.88 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.71 -8.26 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189340153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.517 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds