Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.48934 * 2 1 4 4 C 1.53051 * 109.49044 * 239.96247 * 2 1 3 5 5 N 1.46958 * 109.36634 * 181.60931 * 4 2 1 6 6 C 1.46897 * 111.00414 * 183.18511 * 5 4 2 7 7 C 1.53008 * 109.46933 * 75.98896 * 6 5 4 8 8 H 1.08998 * 109.47316 * 305.40065 * 7 6 5 9 9 C 1.47205 * 109.46856 * 65.40030 * 7 6 5 10 10 N 5.33135 * 138.06635 * 297.71894 * 2 1 3 11 11 C 1.53002 * 109.46910 * 185.39562 * 7 6 5 12 12 C 1.50701 * 109.47119 * 175.00043 * 11 7 6 13 13 H 1.08007 * 119.99784 * 0.02562 * 12 11 7 14 14 C 1.37871 * 120.00289 * 180.02562 * 12 11 7 15 15 N 1.31518 * 119.99987 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00327 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47266 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.46661 * 300.00043 * 16 14 12 19 19 H 1.48503 * 109.47226 * 59.99380 * 16 14 12 20 20 C 1.46953 * 110.88129 * 59.31497 * 5 4 2 21 21 C 1.53052 * 109.36440 * 300.68228 * 20 5 4 22 22 N 1.46953 * 109.50828 * 120.05498 * 2 1 3 23 23 C 1.46895 * 111.00104 * 303.16797 * 22 2 1 24 24 C 1.53003 * 109.47120 * 162.95894 * 23 22 2 25 25 O 1.42897 * 109.47088 * 66.94493 * 24 23 22 26 26 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47623 * 300.04069 * 1 2 3 28 28 H 1.09003 * 109.47452 * 60.04807 * 1 2 3 29 29 H 1.08996 * 109.49302 * 61.63864 * 4 2 1 30 30 H 1.08999 * 109.48593 * 301.57132 * 4 2 1 31 31 H 1.09003 * 109.47325 * 315.99387 * 6 5 4 32 32 H 1.08997 * 109.47639 * 195.98852 * 6 5 4 33 33 H 1.09004 * 109.47130 * 55.00294 * 11 7 6 34 34 H 1.08997 * 109.47430 * 295.00268 * 11 7 6 35 35 H 0.97004 * 119.99678 * 0.02562 * 15 14 12 36 36 H 1.08995 * 109.48924 * 60.64905 * 20 5 4 37 37 H 1.08997 * 109.49233 * 180.71415 * 20 5 4 38 38 H 1.09003 * 109.48773 * 298.43027 * 21 20 5 39 39 H 1.09007 * 109.48618 * 178.36984 * 21 20 5 40 40 H 1.08994 * 109.47136 * 282.95968 * 23 22 2 41 41 H 1.09002 * 109.47236 * 42.95740 * 23 22 2 42 42 H 1.08996 * 109.47291 * 186.94449 * 24 23 22 43 43 H 1.09001 * 109.46782 * 306.94467 * 24 23 22 44 44 H 0.96700 * 114.00105 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2490 5 7 3.5097 -0.7544 -1.2269 6 6 4.0412 -1.3740 -2.4482 7 6 3.9370 -0.3833 -3.6096 8 1 2.9068 -0.0397 -3.7028 9 6 4.8170 0.7684 -3.3524 10 7 5.4960 1.6572 -3.1539 11 6 4.3645 -1.0719 -4.9072 12 6 4.1459 -0.1362 -6.0681 13 1 3.7428 0.8512 -5.8973 14 6 4.4604 -0.5404 -7.3482 15 7 4.9518 -1.7425 -7.5561 16 14 4.1901 0.6198 -8.7870 17 1 4.6049 -0.0486 -10.0466 18 1 2.7520 0.9811 -8.8681 19 1 4.9990 1.8495 -8.5901 20 6 4.0004 -1.4482 -0.0280 21 6 3.4897 -0.7258 1.2210 22 7 2.0207 -0.6937 1.1989 23 6 1.4893 -0.0742 2.4202 24 6 1.6561 -1.0391 3.5958 25 8 3.0464 -1.2086 3.8793 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5144 0.8896 28 1 -0.3634 0.5131 -0.8904 29 1 1.7018 -0.1926 -2.1394 30 1 1.6547 -1.7415 -1.2629 31 1 3.4650 -2.2694 -2.6818 32 1 5.0858 -1.6441 -2.2937 33 1 3.7713 -1.9749 -5.0518 34 1 5.4202 -1.3364 -4.8476 35 1 5.0925 -2.3448 -6.8089 36 1 3.6368 -2.4757 -0.0280 37 1 5.0904 -1.4478 -0.0282 38 1 3.8757 0.2935 1.2349 39 1 3.8286 -1.2555 2.1114 40 1 2.0336 0.8473 2.6265 41 1 0.4318 0.1515 2.2826 42 1 1.1532 -0.6331 4.4734 43 1 1.2174 -2.0034 3.3393 44 1 3.2274 -1.8094 4.6151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249583646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = -22.405374 kcal Electronic energy + Delta-G solvation = -22605.272927 eV Core-core repulsion = 19364.352810 eV Total energy + Delta-G solvation = -3240.920117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76747 -37.60727 -36.55248 -35.06901 -33.79183 -32.45770 -31.79833 -29.76960 -27.24572 -26.78528 -24.93287 -22.78664 -22.29978 -21.91247 -21.26457 -19.66905 -17.85663 -17.11517 -16.62592 -16.30574 -15.52906 -15.20246 -14.99734 -14.77174 -14.56407 -13.76598 -13.59472 -13.43399 -13.32642 -13.05010 -12.92213 -12.31382 -12.15906 -12.08008 -11.97112 -11.80953 -11.66399 -11.39308 -11.31195 -11.06317 -11.03724 -10.89822 -10.61504 -10.54779 -10.31289 -10.12078 -9.99656 -9.79007 -8.64745 -8.44008 -8.38715 -8.16061 -6.41166 -4.11965 3.43952 3.47171 3.64541 3.70801 3.70925 3.81169 3.93768 4.03062 4.52727 4.70915 4.80869 4.85255 4.95821 4.99444 5.09251 5.16059 5.29403 5.35684 5.37452 5.39648 5.50292 5.54511 5.57277 5.60903 5.70592 5.79611 5.88070 5.94623 5.96640 5.99271 6.17910 6.18695 6.29751 6.39971 6.92391 6.97791 7.12317 7.20685 7.21468 7.29431 7.33914 8.06428 8.37723 8.57992 8.81604 9.59113 10.99650 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.003439 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.325799 B = 8139.561710 C = 8372.176124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.048 0.952 4 C 0.062 3.938 5 N -0.544 5.544 6 C 0.062 3.938 7 C 0.020 3.980 8 H 0.099 0.901 9 C 0.257 3.743 10 N -0.479 5.479 11 C 0.018 3.982 12 C -0.605 4.605 13 H 0.050 0.950 14 C 0.020 3.980 15 N -0.909 5.909 16 Si 1.066 2.934 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.288 1.288 20 C 0.058 3.942 21 C 0.053 3.947 22 N -0.531 5.531 23 C 0.046 3.954 24 C 0.082 3.918 25 O -0.568 6.568 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.016 0.984 35 H 0.269 0.731 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -2.269 21.961 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.066 0.934 4 C -0.066 4.066 5 N -0.269 5.269 6 C -0.066 4.066 7 C -0.002 4.002 8 H 0.117 0.883 9 C -0.059 4.059 10 N -0.156 5.156 11 C -0.021 4.021 12 C -0.643 4.643 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.545 5.545 16 Si 0.894 3.106 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.215 1.215 20 C -0.070 4.070 21 C -0.074 4.074 22 N -0.257 5.257 23 C -0.082 4.082 24 C 0.004 3.996 25 O -0.374 6.374 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.773 -0.374 20.111 21.944 hybrid contribution -0.505 -0.767 2.018 2.217 sum -9.277 -1.141 22.129 24.022 Atomic orbital electron populations 1.21913 0.94237 1.02590 1.01802 1.21686 0.94876 0.96349 0.89983 0.93418 1.22223 0.87466 0.99655 0.97269 1.62151 1.08293 1.54180 1.02259 1.22224 1.00660 0.95366 0.88383 1.19033 0.96643 0.88172 0.96329 0.88279 1.28788 0.93097 0.93658 0.90403 1.80971 1.11155 1.11861 1.11608 1.19285 0.96754 0.96243 0.89788 1.21968 1.47690 1.01552 0.93085 0.93132 1.25786 0.93662 0.98652 1.00310 1.70807 1.41248 1.06980 1.35466 0.83583 0.76457 0.74879 0.75718 1.20693 1.21268 1.21452 1.22177 0.99600 0.95858 0.89365 1.22464 0.86374 0.99970 0.98611 1.62223 1.09316 1.52996 1.01134 1.22275 1.00809 0.95586 0.89481 1.22221 0.82243 0.99158 0.96015 1.86516 1.24746 1.70197 1.55951 0.91725 0.92488 0.91719 0.89865 0.93816 0.92681 0.90500 0.95439 0.96552 0.92058 0.94180 0.90587 0.94724 0.87516 0.94149 0.89014 0.93616 0.92760 0.77884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.93 37.15 0.33 -1.01 16 2 C 0.08 0.93 2.56 -67.66 -0.17 0.75 16 3 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 4 C 0.06 0.81 4.72 -3.77 -0.02 0.79 16 5 N -0.54 -7.95 4.35 -234.47 -1.02 -8.97 16 6 C 0.06 0.98 4.36 -3.82 -0.02 0.96 16 7 C 0.02 0.39 2.27 -93.40 -0.21 0.18 16 8 H 0.10 1.83 6.74 -51.93 -0.35 1.48 16 9 C 0.26 5.64 13.68 -20.76 -0.28 5.36 16 10 N -0.48 -11.34 18.54 42.15 0.78 -10.56 16 11 C 0.02 0.42 3.74 -27.88 -0.10 0.32 16 12 C -0.60 -16.54 8.60 -34.44 -0.30 -16.83 16 13 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 14 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 15 N -0.91 -27.01 13.65 55.43 0.76 -26.26 16 16 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 C 0.06 0.76 5.56 -3.77 -0.02 0.74 16 21 C 0.05 0.66 5.27 -3.77 -0.02 0.64 16 22 N -0.53 -5.97 4.47 -226.49 -1.01 -6.98 16 23 C 0.05 0.43 5.37 -3.83 -0.02 0.41 16 24 C 0.08 0.61 7.34 37.16 0.27 0.88 16 25 O -0.57 -4.64 10.65 -35.23 -0.38 -5.01 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.45 6.03 -51.93 -0.31 0.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.10 6.72 -51.93 -0.35 0.76 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.80 7.99 -51.93 -0.42 0.39 16 32 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 33 H 0.03 0.64 8.01 -51.93 -0.42 0.23 16 34 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 35 H 0.27 7.83 7.22 -40.82 -0.29 7.54 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 1.27 5.23 -51.92 -0.27 1.00 16 40 H 0.04 0.42 8.03 -51.93 -0.42 0.01 16 41 H 0.09 0.71 5.46 -51.93 -0.28 0.42 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.37 1.44 9.12 45.56 0.42 1.86 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -32.62 347.86 -7.88 -40.50 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -6.51 Total: -1.79 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.66 Total: -6.35 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.50 Total: -52.77 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.38 Total: -5.01 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.62 -7.88 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249583646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.090 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds