Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.48679 * 2 1 4 4 C 1.53053 * 109.48828 * 120.04233 * 2 1 3 5 5 N 1.46957 * 109.36226 * 178.39180 * 4 2 1 6 6 C 1.46902 * 110.99877 * 176.80941 * 5 4 2 7 7 C 1.52998 * 109.47098 * 176.11013 * 6 5 4 8 8 H 1.09001 * 109.47252 * 302.12086 * 7 6 5 9 9 C 1.47202 * 109.46933 * 62.11512 * 7 6 5 10 10 N 5.57435 * 155.13046 * 67.05434 * 2 1 3 11 11 C 1.52995 * 109.47226 * 182.11307 * 7 6 5 12 12 C 1.50705 * 109.47325 * 175.00057 * 11 7 6 13 13 H 1.08002 * 119.99837 * 0.02562 * 12 11 7 14 14 C 1.37874 * 120.00157 * 179.72284 * 12 11 7 15 15 N 1.31516 * 119.99827 * 0.28587 * 14 12 11 16 16 Si 1.86803 * 120.00134 * 180.27652 * 14 12 11 17 17 H 1.48497 * 109.46876 * 90.00097 * 16 14 12 18 18 H 1.48495 * 109.47215 * 210.00675 * 16 14 12 19 19 H 1.48502 * 109.46984 * 330.00424 * 16 14 12 20 20 C 1.46953 * 110.88106 * 300.67824 * 5 4 2 21 21 C 1.53053 * 109.36708 * 59.32029 * 20 5 4 22 22 N 1.46953 * 109.50788 * 239.94433 * 2 1 3 23 23 C 1.46902 * 111.00111 * 56.83162 * 22 2 1 24 24 C 1.53000 * 109.47350 * 190.00414 * 23 22 2 25 25 O 1.42892 * 109.47097 * 64.99677 * 24 23 22 26 26 H 1.08998 * 109.46904 * 299.95645 * 1 2 3 27 27 H 1.09002 * 109.46958 * 59.95754 * 1 2 3 28 28 H 1.09000 * 109.46593 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.49182 * 58.42240 * 4 2 1 30 30 H 1.09003 * 109.50604 * 298.36782 * 4 2 1 31 31 H 1.09006 * 109.46827 * 56.11446 * 6 5 4 32 32 H 1.08999 * 109.47250 * 296.11188 * 6 5 4 33 33 H 1.09002 * 109.46842 * 55.00604 * 11 7 6 34 34 H 1.09004 * 109.47411 * 295.00440 * 11 7 6 35 35 H 0.97001 * 119.99996 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.49322 * 179.29217 * 20 5 4 37 37 H 1.09004 * 109.49052 * 299.35427 * 20 5 4 38 38 H 1.08996 * 109.49400 * 181.63536 * 21 20 5 39 39 H 1.09000 * 109.48689 * 61.56622 * 21 20 5 40 40 H 1.09007 * 109.46951 * 310.00157 * 23 22 2 41 41 H 1.09003 * 109.46742 * 69.99823 * 23 22 2 42 42 H 1.09000 * 109.46963 * 185.00618 * 24 23 22 43 43 H 1.09003 * 109.46601 * 304.99918 * 24 23 22 44 44 H 0.96704 * 113.99678 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7223 1.2490 5 7 3.5097 -0.7545 1.2269 6 6 4.0412 -1.3741 2.4482 7 6 5.5642 -1.4776 2.3464 8 1 5.8307 -2.0571 1.4625 9 6 6.1417 -0.1278 2.2405 10 7 6.5875 0.9139 2.1588 11 6 6.1129 -2.1705 3.5952 12 6 7.5970 -2.3829 3.4409 13 1 8.0986 -2.0558 2.5421 14 6 8.3153 -2.9889 4.4496 15 7 7.7044 -3.3868 5.5442 16 14 10.1561 -3.2451 4.2615 17 1 10.8776 -2.0626 4.7965 18 1 10.5665 -4.4577 5.0140 19 1 10.4874 -3.4187 2.8244 20 6 4.0005 -1.4483 0.0280 21 6 3.4898 -0.7260 -1.2211 22 7 2.0208 -0.6938 -1.1989 23 6 1.4894 -0.0742 -2.4203 24 6 1.8125 -0.9611 -3.6243 25 8 1.1201 -2.2048 -3.4993 26 1 -0.3633 0.5132 0.8904 27 1 -0.3633 0.5145 -0.8896 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6548 -1.7416 1.2630 30 1 1.7019 -0.1930 2.1396 31 1 3.6162 -2.3712 2.5643 32 1 3.7754 -0.7631 3.3109 33 1 5.6194 -3.1341 3.7225 34 1 5.9240 -1.5472 4.4693 35 1 8.2097 -3.8136 6.2538 36 1 5.0904 -1.4480 0.0281 37 1 3.6368 -2.4759 0.0280 38 1 3.8285 -1.2556 -2.1115 39 1 3.8757 0.2933 -1.2350 40 1 0.4087 0.0371 -2.3306 41 1 1.9454 0.9062 -2.5583 42 1 1.4974 -0.4601 -4.5396 43 1 2.8862 -1.1452 -3.6621 44 1 1.2791 -2.8186 -4.2294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249583647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = -15.641026 kcal Electronic energy + Delta-G solvation = -22580.312676 eV Core-core repulsion = 19339.685882 eV Total energy + Delta-G solvation = -3240.626793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.78682 -37.55842 -36.49764 -34.99516 -33.51828 -32.61474 -31.67625 -29.76114 -27.26254 -27.09959 -24.97245 -23.42534 -22.12360 -21.61075 -21.06022 -19.67429 -17.62926 -16.72590 -16.66341 -16.25335 -15.53896 -15.16843 -14.84840 -14.60809 -14.49006 -14.35117 -13.76690 -13.44745 -13.16699 -13.02583 -12.72478 -12.33031 -12.15086 -12.05835 -11.95955 -11.80839 -11.58890 -11.37845 -11.19438 -11.09555 -11.02852 -10.81611 -10.63546 -10.57124 -10.43966 -10.16579 -9.99890 -9.52624 -9.20522 -8.45315 -8.38672 -8.11750 -6.09090 -4.12323 3.30135 3.36660 3.39659 3.69190 3.73062 3.82281 4.01174 4.07719 4.41601 4.70617 4.81181 4.89302 4.97339 5.01448 5.11303 5.15169 5.29028 5.31944 5.38782 5.40187 5.43720 5.48984 5.58949 5.65613 5.68333 5.72909 5.83435 5.94410 5.97454 6.05165 6.09295 6.20146 6.40491 6.50546 6.93526 6.97673 7.23379 7.24359 7.43755 7.47882 7.53486 7.85910 8.23514 8.57992 8.92210 9.53102 11.01836 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.003544 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.571421 B = 7898.606886 C = 8213.194211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.046 0.954 4 C 0.064 3.936 5 N -0.544 5.544 6 C 0.064 3.936 7 C 0.005 3.995 8 H 0.101 0.899 9 C 0.256 3.744 10 N -0.479 5.479 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.051 3.949 21 C 0.056 3.944 22 N -0.524 5.524 23 C 0.048 3.952 24 C 0.080 3.920 25 O -0.558 6.558 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.535 2.817 -15.907 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.064 0.936 4 C -0.064 4.064 5 N -0.268 5.268 6 C -0.065 4.065 7 C -0.017 4.017 8 H 0.119 0.881 9 C -0.061 4.061 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.077 4.077 21 C -0.072 4.072 22 N -0.250 5.250 23 C -0.080 4.080 24 C 0.002 3.998 25 O -0.362 6.362 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -15.041 4.591 -15.296 21.938 hybrid contribution 1.209 -0.771 -0.495 1.517 sum -13.832 3.820 -15.791 21.337 Atomic orbital electron populations 1.21879 0.94190 1.02753 1.01512 1.21650 0.94941 0.96008 0.89903 0.93559 1.22139 0.87585 0.99694 0.96974 1.62229 1.07932 1.54148 1.02538 1.22228 0.93704 0.98477 0.92045 1.19343 0.91992 0.85849 1.04491 0.88122 1.28842 0.91691 0.94120 0.91486 1.80976 1.10817 1.13209 1.10543 1.19170 0.96200 0.95681 0.89635 1.21134 0.92837 1.39334 1.03132 0.92551 1.24948 0.98508 0.95333 0.95139 1.69940 1.35996 1.40317 1.06736 0.86596 0.85507 0.77693 0.78306 1.20647 1.21090 1.19749 1.22248 1.00448 0.96097 0.88918 1.22215 0.87100 0.99644 0.98236 1.62144 1.08263 1.53376 1.01181 1.22225 1.01619 0.94532 0.89579 1.22200 0.95667 0.85485 0.96471 1.86610 1.72059 1.27513 1.50004 0.92088 0.92519 0.91580 0.93719 0.90399 0.92819 0.90069 0.94405 0.95527 0.92792 0.89605 0.93485 0.90414 0.94295 0.89493 0.93703 0.93754 0.93580 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.89 37.16 0.33 -1.02 16 2 C 0.08 0.95 2.56 -67.65 -0.17 0.77 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 4 C 0.06 0.80 4.90 -3.77 -0.02 0.78 16 5 N -0.54 -7.79 4.44 -234.47 -1.04 -8.83 16 6 C 0.06 0.99 4.52 -3.82 -0.02 0.97 16 7 C 0.01 0.09 1.76 -93.41 -0.16 -0.07 16 8 H 0.10 1.77 6.12 -51.93 -0.32 1.45 16 9 C 0.26 5.39 13.47 -20.76 -0.28 5.11 16 10 N -0.48 -10.94 18.54 42.15 0.78 -10.16 16 11 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 12 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 13 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.05 0.69 5.12 -3.77 -0.02 0.67 16 21 C 0.06 0.67 5.42 -3.77 -0.02 0.65 16 22 N -0.52 -6.03 4.47 -226.48 -1.01 -7.04 16 23 C 0.05 0.46 5.11 -3.82 -0.02 0.44 16 24 C 0.08 0.66 7.11 37.16 0.26 0.93 16 25 O -0.56 -5.30 13.61 -35.23 -0.48 -5.78 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 6.15 -51.93 -0.32 0.16 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 1.21 5.86 -51.93 -0.30 0.91 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.84 6.25 -51.93 -0.32 0.51 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.81 5.73 -51.92 -0.30 0.51 16 41 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.37 6.28 -51.93 -0.33 0.05 16 44 H 0.37 1.90 9.12 45.56 0.42 2.31 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -31.75 349.78 -7.90 -39.65 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.50 Total: -1.70 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.63 Total: -2.87 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.54 Total: -50.90 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.48 Total: -5.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.75 -7.90 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249583647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.009 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds