Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46803 * 2 1 4 4 N 1.46496 * 109.47071 * 120.00252 * 2 1 3 5 5 C 1.34777 * 119.99614 * 274.99619 * 4 2 1 6 6 O 1.21588 * 120.00178 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99964 * 180.02562 * 5 4 2 8 8 C 1.46493 * 119.99864 * 179.73002 * 7 5 4 9 9 C 1.53001 * 109.47084 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47325 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99792 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00025 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00107 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00009 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47127 * 59.99950 * 14 12 10 16 16 H 1.48507 * 109.47265 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47080 * 300.00056 * 14 12 10 18 18 C 1.50703 * 109.47082 * 240.00314 * 2 1 3 19 19 C 1.29820 * 118.55641 * 115.00260 * 18 2 1 20 20 C 1.50140 * 123.28625 * 180.37466 * 19 18 2 21 21 N 1.46845 * 110.27175 * 342.93933 * 20 19 18 22 22 C 1.46911 * 110.99683 * 174.31629 * 21 20 19 23 23 C 1.47244 * 110.20324 * 50.93356 * 21 20 19 24 24 C 1.50304 * 118.55161 * 294.73082 * 18 2 1 25 25 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47154 * 299.99795 * 1 2 3 27 27 H 1.09002 * 109.47184 * 60.00135 * 1 2 3 28 28 H 0.96996 * 120.00499 * 95.00197 * 4 2 1 29 29 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47196 * 299.99538 * 8 7 5 31 31 H 1.09006 * 109.47678 * 59.99732 * 8 7 5 32 32 H 1.09007 * 109.46593 * 299.99743 * 9 8 7 33 33 H 1.08993 * 109.47372 * 59.99485 * 9 8 7 34 34 H 0.97000 * 120.00440 * 179.97438 * 13 12 10 35 35 H 1.08003 * 118.35607 * 0.38702 * 19 18 2 36 36 H 1.08995 * 109.34029 * 103.18668 * 20 19 18 37 37 H 1.08997 * 109.33755 * 222.86369 * 20 19 18 38 38 H 1.08999 * 109.47037 * 63.96012 * 22 21 20 39 39 H 1.09003 * 109.46640 * 183.95811 * 22 21 20 40 40 H 1.09000 * 109.46973 * 303.95794 * 22 21 20 41 41 H 1.08998 * 109.63893 * 50.88900 * 23 21 20 42 42 H 1.08997 * 109.63414 * 171.29214 * 23 21 20 43 43 H 1.09002 * 109.43411 * 283.58167 * 24 18 2 44 44 H 1.09000 * 109.43397 * 43.42842 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5968 -0.6535 3.4575 8 6 2.7424 0.0788 4.7178 9 6 3.2667 -0.8674 5.7998 10 6 3.4159 -0.1143 7.0966 11 1 3.1624 0.9345 7.1442 12 6 3.8758 -0.7641 8.2223 13 7 4.1839 -2.0413 8.1645 14 14 4.0614 0.1696 9.8294 15 1 2.7419 0.7117 10.2421 16 1 4.5702 -0.7489 10.8797 17 1 5.0202 1.2884 9.6441 18 6 2.0323 -0.7104 -1.2305 19 6 2.6936 -0.0276 -2.1148 20 6 3.2346 -0.6252 -3.3814 21 7 3.2728 -2.0894 -3.2773 22 6 3.6718 -2.6977 -4.5537 23 6 1.9654 -2.6020 -2.8345 24 6 1.7510 -2.1796 -1.3770 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6318 1.1526 29 1 2.8281 -1.5945 3.4136 30 1 3.4462 0.9000 4.5818 31 1 1.7739 0.4768 5.0209 32 1 2.5632 -1.6889 5.9360 33 1 4.2352 -1.2650 5.4966 34 1 4.5079 -2.4985 8.9563 35 1 2.8631 1.0229 -1.9299 36 1 2.5959 -0.3392 -4.2170 37 1 4.2439 -0.2517 -3.5543 38 1 4.6908 -2.3966 -4.7968 39 1 3.6240 -3.7834 -4.4694 40 1 2.9966 -2.3644 -5.3418 41 1 1.1770 -2.1844 -3.4607 42 1 1.9542 -3.6894 -2.9081 43 1 2.4226 -2.7437 -0.7298 44 1 0.7188 -2.3814 -1.0911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273521483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = -23.345393 kcal Electronic energy + Delta-G solvation = -21740.571250 eV Core-core repulsion = 18499.610370 eV Total energy + Delta-G solvation = -3240.960880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05095 -39.09204 -36.33302 -34.65543 -33.15626 -32.69371 -31.21169 -30.45538 -28.93249 -27.06227 -24.77588 -24.28936 -23.24729 -21.82492 -20.83021 -20.27798 -18.37110 -17.70445 -16.61919 -16.29405 -15.59690 -15.44813 -15.12896 -15.04583 -14.49533 -14.35412 -14.10359 -13.80719 -13.41524 -13.26446 -13.08655 -12.90719 -12.64787 -12.39991 -12.30612 -12.20354 -11.77578 -11.55913 -11.21935 -11.15425 -10.98274 -10.62734 -10.58768 -10.26550 -9.87928 -9.52092 -9.26020 -9.16321 -8.95122 -8.69503 -8.44355 -8.18933 -6.05752 -4.08300 1.86719 3.21662 3.33941 3.37462 3.41633 3.56158 3.66835 4.29900 4.42854 4.46746 4.73860 4.78579 4.88173 4.95552 5.00435 5.12477 5.17966 5.28747 5.29798 5.31188 5.34374 5.48776 5.50177 5.55171 5.68123 5.77149 5.90727 6.08223 6.21007 6.35899 6.45021 6.57129 6.63385 6.72659 6.81047 6.84268 7.07097 7.32428 7.61564 7.67992 7.93643 8.30337 8.51132 8.96730 9.07544 9.56169 11.05932 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.002663 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.345073 B =10512.556676 C =10932.117284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.198 3.802 3 H 0.090 0.910 4 N -0.746 5.746 5 C 0.699 3.301 6 O -0.600 6.600 7 N -0.739 5.739 8 C 0.141 3.859 9 C 0.013 3.987 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.118 4.118 19 C -0.147 4.147 20 C 0.085 3.915 21 N -0.538 5.538 22 C 0.023 3.977 23 C 0.052 3.948 24 C -0.081 4.081 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -2.828 -26.027 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.092 3.908 3 H 0.108 0.892 4 N -0.402 5.402 5 C 0.399 3.601 6 O -0.479 6.479 7 N -0.392 5.392 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.119 4.119 19 C -0.167 4.167 20 C -0.042 4.042 21 N -0.263 5.263 22 C -0.125 4.125 23 C -0.076 4.076 24 C -0.118 4.118 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.227 0.773 29 H 0.226 0.774 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.417 -1.988 -25.462 25.919 hybrid contribution -0.203 -0.246 0.270 0.418 sum -4.620 -2.233 -25.192 25.709 Atomic orbital electron populations 1.22192 0.95184 1.02026 1.02471 1.19757 0.93690 0.96246 0.81076 0.89236 1.45202 1.72649 1.13545 1.08785 1.16071 0.78507 0.85161 0.80334 1.90875 1.57732 1.14527 1.84731 1.45533 1.69797 1.13888 1.10023 1.21573 1.00293 0.95544 0.80811 1.19319 0.96564 0.94622 0.91928 1.21024 1.44307 0.96519 0.94082 0.92283 1.24994 0.95239 0.94921 0.99159 1.69947 1.44640 1.09115 1.29703 0.86570 0.78601 0.79592 0.82748 1.20116 1.21278 1.20116 1.21028 0.99129 0.95797 0.95956 1.22089 0.98517 1.00039 0.96006 1.20970 1.00947 0.87141 0.95159 1.62436 1.28868 1.05586 1.29404 1.22403 1.00773 1.00041 0.89306 1.22243 0.89528 1.00042 0.95755 1.20515 1.01983 0.92868 0.96444 0.92500 0.91526 0.92033 0.77314 0.77438 0.92872 0.92830 0.95995 0.95981 0.92828 0.86687 0.93710 0.89525 0.91168 0.91201 0.95648 0.94418 0.90326 0.89913 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.33 37.16 0.35 -1.41 16 2 C 0.20 2.35 2.72 -69.08 -0.19 2.16 16 3 H 0.09 1.25 7.06 -51.93 -0.37 0.88 16 4 N -0.75 -9.97 5.04 -59.81 -0.30 -10.27 16 5 C 0.70 12.62 8.53 -86.91 -0.74 11.88 16 6 O -0.60 -13.13 16.01 5.29 0.08 -13.04 16 7 N -0.74 -13.52 5.56 -65.22 -0.36 -13.89 16 8 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 11 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.12 -1.15 4.91 -100.93 -0.50 -1.64 16 19 C -0.15 -1.38 9.53 -35.96 -0.34 -1.72 16 20 C 0.09 0.69 5.66 -5.28 -0.03 0.66 16 21 N -0.54 -4.51 4.97 -244.30 -1.21 -5.72 16 22 C 0.02 0.15 9.62 60.07 0.58 0.72 16 23 C 0.05 0.39 5.60 -3.51 -0.02 0.37 16 24 C -0.08 -0.66 5.42 -27.95 -0.15 -0.81 16 25 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.39 4.33 7.61 -40.82 -0.31 4.02 16 29 H 0.39 6.22 8.49 -40.82 -0.35 5.87 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 1.04 7.64 -52.48 -0.40 0.64 16 36 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.39 7.98 -51.93 -0.41 -0.02 16 40 H 0.02 0.15 8.09 -51.93 -0.42 -0.28 16 41 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.08 0.51 7.95 -51.93 -0.41 0.10 16 43 H 0.08 0.70 7.64 -51.93 -0.40 0.30 16 44 H 0.08 0.58 6.86 -51.93 -0.36 0.22 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -32.73 355.95 -9.88 -42.62 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.55 Total: 3.95 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.62 Total: 0.08 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -1.14 Total: -55.57 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.73 -9.88 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273521483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.270 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds