Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47211 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99761 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99724 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99758 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47294 * 90.00143 * 14 12 10 16 16 H 1.48499 * 109.47218 * 210.00003 * 14 12 10 17 17 H 1.48500 * 109.47317 * 330.00365 * 14 12 10 18 18 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 19 19 C 1.29830 * 118.55768 * 244.73266 * 18 2 1 20 20 C 1.50137 * 123.28812 * 180.10774 * 19 18 2 21 21 N 1.46843 * 110.33418 * 343.42957 * 20 19 18 22 22 C 1.46899 * 111.00422 * 287.33558 * 21 20 19 23 23 C 1.47248 * 110.20264 * 50.72330 * 21 20 19 24 24 C 1.50309 * 118.55522 * 65.00463 * 18 2 1 25 25 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 26 26 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 28 28 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 29 29 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 30 30 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 31 31 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 32 32 H 1.09000 * 109.47211 * 300.00689 * 9 8 7 33 33 H 1.09007 * 109.46376 * 60.00147 * 9 8 7 34 34 H 0.96999 * 119.99800 * 180.02562 * 13 12 10 35 35 H 1.08001 * 118.34932 * 0.35296 * 19 18 2 36 36 H 1.08999 * 109.46959 * 223.06144 * 20 19 18 37 37 H 1.09000 * 109.00721 * 103.50828 * 20 19 18 38 38 H 1.08992 * 109.47160 * 182.92872 * 22 21 20 39 39 H 1.09002 * 109.46438 * 302.93414 * 22 21 20 40 40 H 1.09004 * 109.46984 * 62.92589 * 22 21 20 41 41 H 1.08996 * 109.63242 * 171.49969 * 23 21 20 42 42 H 1.09001 * 109.80146 * 50.98562 * 23 21 20 43 43 H 1.09010 * 109.42390 * 283.57426 * 24 18 2 44 44 H 1.08997 * 109.43307 * 43.42100 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1417 -0.0196 -2.3585 6 8 1.8526 1.1602 -2.4130 7 7 2.5857 -0.6562 -3.4603 8 6 2.7203 0.0733 -4.7236 9 6 3.2399 -0.8741 -5.8068 10 6 3.3778 -0.1238 -7.1065 11 1 3.1210 0.9241 -7.1549 12 6 3.8319 -0.7752 -8.2337 13 7 4.1441 -2.0514 -8.1747 14 14 4.0035 0.1549 -9.8444 15 1 5.3657 0.7391 -9.9361 16 1 3.7873 -0.7774 -10.9799 17 1 2.9939 1.2427 -9.8979 18 6 2.0323 -0.7104 1.2304 19 6 2.6981 -0.0288 2.1123 20 6 3.2487 -0.6289 3.3736 21 7 2.6092 -1.9227 3.6446 22 6 1.2238 -1.7407 4.0977 23 6 2.6647 -2.7780 2.4473 24 6 1.7458 -2.1784 1.3798 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1527 29 1 2.8167 -1.5973 -3.4167 30 1 1.7486 0.4676 -5.0209 31 1 3.4226 0.8970 -4.5944 32 1 4.2117 -1.2681 -5.5093 33 1 2.5379 -1.6980 -5.9360 34 1 4.4639 -2.5095 -8.9677 35 1 2.8607 1.0235 1.9313 36 1 3.0636 0.0470 4.2084 37 1 4.3228 -0.7743 3.2581 38 1 0.7906 -2.7108 4.3408 39 1 1.2117 -1.1050 4.9831 40 1 0.6411 -1.2708 3.3052 41 1 2.3265 -3.7831 2.6992 42 1 3.6865 -2.8192 2.0699 43 1 0.7062 -2.3164 1.6772 44 1 1.9197 -2.6804 0.4281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273521485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = -20.912387 kcal Electronic energy + Delta-G solvation = -21963.109385 eV Core-core repulsion = 18722.254008 eV Total energy + Delta-G solvation = -3240.855377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39119 -39.33527 -36.22440 -34.66578 -32.98453 -32.47781 -31.28129 -30.32401 -28.98094 -27.47225 -24.90791 -24.47075 -23.18289 -21.77642 -20.86884 -20.33592 -18.46611 -17.63174 -16.64671 -16.32943 -15.83633 -15.49128 -15.15394 -14.90757 -14.52378 -14.43906 -14.07909 -13.90834 -13.51815 -13.38602 -12.94474 -12.77280 -12.55160 -12.39844 -12.27023 -12.18376 -11.90127 -11.57750 -11.41659 -11.18136 -11.02812 -10.81875 -10.62573 -10.31154 -9.92835 -9.56236 -9.28716 -9.20023 -9.04209 -8.65281 -8.47815 -8.24081 -6.08778 -4.11321 1.75306 3.12938 3.30028 3.36142 3.40901 3.59797 3.64414 4.36881 4.39642 4.41570 4.63762 4.72462 4.78313 4.90781 5.09067 5.15385 5.15762 5.25855 5.28380 5.33992 5.38975 5.46865 5.48735 5.56085 5.61869 5.66294 5.84206 6.03879 6.20095 6.31229 6.40752 6.49696 6.61384 6.67017 6.74558 6.78938 7.01532 7.25679 7.57692 7.64054 7.90564 8.26722 8.44899 8.93622 9.01523 9.53391 11.02956 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037074 B = 0.002688 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.061594 B =10413.367351 C =10722.708806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.198 3.802 3 H 0.090 0.910 4 N -0.746 5.746 5 C 0.699 3.301 6 O -0.599 6.599 7 N -0.739 5.739 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.126 4.126 19 C -0.176 4.176 20 C 0.080 3.920 21 N -0.533 5.533 22 C 0.016 3.984 23 C 0.051 3.949 24 C -0.120 4.120 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.392 0.608 29 H 0.392 0.608 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.262 0.738 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -2.305 24.745 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.093 3.907 3 H 0.108 0.892 4 N -0.403 5.403 5 C 0.399 3.601 6 O -0.478 6.478 7 N -0.392 5.392 8 C 0.018 3.982 9 C -0.024 4.024 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.127 4.127 19 C -0.196 4.196 20 C -0.047 4.047 21 N -0.255 5.255 22 C -0.132 4.132 23 C -0.077 4.077 24 C -0.158 4.158 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.226 0.774 29 H 0.225 0.775 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.796 -1.574 24.936 25.442 hybrid contribution -0.155 -0.026 -1.663 1.670 sum -4.951 -1.600 23.273 23.848 Atomic orbital electron populations 1.22171 0.95167 1.01984 1.02465 1.19737 0.93714 0.96153 0.81088 0.89244 1.45245 1.72772 1.13534 1.08768 1.16072 0.78514 0.85185 0.80325 1.90881 1.57598 1.14499 1.84774 1.45540 1.69979 1.13901 1.09789 1.21585 1.00371 0.95604 0.80675 1.19325 0.96574 0.94609 0.91935 1.21056 1.44368 0.96640 0.93841 0.92224 1.24997 0.95213 0.94914 0.99204 1.69957 1.44701 1.09128 1.29601 0.86507 0.78576 0.79631 0.82813 1.20555 1.21180 1.19721 1.21010 0.99835 0.95738 0.96077 1.22840 0.98784 1.00612 0.97360 1.21126 0.99304 0.89795 0.94525 1.62748 1.17540 1.13372 1.31798 1.22460 0.88879 1.01867 1.00006 1.22287 1.00181 0.96817 0.88443 1.21021 1.01174 0.92880 1.00768 0.91512 0.92606 0.92096 0.77408 0.77462 0.92814 0.92833 0.95995 0.95992 0.92867 0.86985 0.89738 0.89303 0.91473 0.91538 0.94520 0.90088 0.90240 0.90255 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.35 37.16 0.35 -1.41 16 2 C 0.20 2.32 2.72 -69.09 -0.19 2.14 16 3 H 0.09 1.24 7.06 -51.93 -0.37 0.87 16 4 N -0.75 -9.75 5.05 -59.82 -0.30 -10.05 16 5 C 0.70 12.46 8.53 -86.92 -0.74 11.71 16 6 O -0.60 -13.01 16.01 5.28 0.08 -12.93 16 7 N -0.74 -13.32 5.56 -65.22 -0.36 -13.69 16 8 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 14 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.13 -1.15 4.27 -100.93 -0.43 -1.58 16 19 C -0.18 -1.53 9.10 -35.97 -0.33 -1.86 16 20 C 0.08 0.60 5.94 -5.28 -0.03 0.57 16 21 N -0.53 -4.13 5.29 -244.41 -1.29 -5.42 16 22 C 0.02 0.11 8.91 60.06 0.54 0.64 16 23 C 0.05 0.37 6.06 -3.59 -0.02 0.35 16 24 C -0.12 -0.91 4.71 -28.03 -0.13 -1.04 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.55 7.74 -51.93 -0.40 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.39 4.15 7.05 -40.82 -0.29 3.86 16 29 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.11 0.99 7.64 -52.49 -0.40 0.59 16 36 H 0.08 0.55 7.98 -51.93 -0.41 0.13 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 40 H 0.04 0.27 5.68 -51.93 -0.29 -0.03 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.08 0.58 6.85 -51.92 -0.36 0.23 16 44 H 0.08 0.56 6.58 -51.93 -0.34 0.22 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -32.28 351.43 -9.82 -42.10 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.39 Total: 4.31 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.57 Total: -0.58 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -1.22 Total: -54.70 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.28 -9.82 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273521485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.190 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds