Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46848 * 111.00109 * 45.79068 * 4 3 2 6 6 C 1.53036 * 109.52325 * 185.83663 * 5 4 3 7 7 C 1.53123 * 109.27910 * 300.81822 * 6 5 4 8 8 N 1.46498 * 109.57384 * 177.59229 * 7 6 5 9 9 C 1.34773 * 120.00355 * 85.28700 * 8 7 6 10 10 O 1.21592 * 119.99378 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00554 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00389 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47150 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47151 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99461 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99762 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99902 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46755 * 90.00024 * 18 16 14 20 20 H 1.48497 * 109.46907 * 209.99470 * 18 16 14 21 21 H 1.48495 * 109.46933 * 329.99855 * 18 16 14 22 22 C 1.53121 * 109.15709 * 57.65405 * 7 6 5 23 23 C 1.46849 * 110.99649 * 169.99608 * 4 3 2 24 24 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 28 28 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 29 29 H 1.08997 * 109.46035 * 305.85174 * 5 4 3 30 30 H 1.09006 * 109.46342 * 65.82071 * 5 4 3 31 31 H 1.09005 * 109.50033 * 180.87700 * 6 5 4 32 32 H 1.09001 * 109.50223 * 60.76533 * 6 5 4 33 33 H 1.09001 * 109.52263 * 297.75434 * 7 6 5 34 34 H 0.97003 * 120.00043 * 265.28640 * 8 7 6 35 35 H 0.97003 * 119.99844 * 359.97438 * 11 9 8 36 36 H 1.08996 * 109.47199 * 300.00394 * 12 11 9 37 37 H 1.09008 * 109.46459 * 59.99879 * 12 11 9 38 38 H 1.08997 * 109.47344 * 300.00009 * 13 12 11 39 39 H 1.08998 * 109.46999 * 60.00241 * 13 12 11 40 40 H 0.97003 * 119.99940 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.50276 * 182.40062 * 22 7 6 42 42 H 1.09006 * 109.50060 * 62.28789 * 22 7 6 43 43 H 1.09001 * 109.46678 * 294.17655 * 23 4 3 44 44 H 1.09006 * 109.46228 * 54.16086 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 7 6.3403 1.3027 3.6982 9 6 7.4582 0.5599 3.8209 10 8 7.8205 -0.1496 2.9023 11 7 8.1744 0.6034 4.9617 12 6 9.3892 -0.2044 5.0954 13 6 10.0070 0.0280 6.4757 14 6 11.2570 -0.8026 6.6129 15 1 11.5788 -1.4328 5.7969 16 6 11.9903 -0.7571 7.7796 17 7 13.0808 -1.4823 7.8994 18 14 11.4340 0.3336 9.1904 19 1 10.5282 -0.4343 10.0822 20 1 12.6189 0.7883 9.9614 21 1 10.7128 1.5134 8.6493 22 6 4.7688 2.5555 2.3013 23 6 3.9122 2.4755 1.0357 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 3.0301 -0.7630 1.2786 30 1 4.3823 -0.0478 0.3688 31 1 5.1468 -0.8572 2.5788 32 1 3.9389 0.1763 3.3810 33 1 6.2348 1.1340 1.6096 34 1 6.0515 1.8690 4.4308 35 1 7.8856 1.1697 5.6944 36 1 9.1385 -1.2591 4.9820 37 1 10.1039 0.0841 4.3245 38 1 10.2578 1.0827 6.5886 39 1 9.2925 -0.2601 7.2467 40 1 13.5966 -1.4505 8.7204 41 1 5.4593 3.3950 2.2210 42 1 4.1241 2.6956 3.1690 43 1 4.5585 2.3492 0.1671 44 1 3.3357 3.3945 0.9290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273530334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = -14.347898 kcal Electronic energy + Delta-G solvation = -21634.606383 eV Core-core repulsion = 18394.035663 eV Total energy + Delta-G solvation = -3240.570719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13458 -38.96651 -36.03137 -34.79984 -33.73557 -32.76423 -31.25650 -31.07125 -29.69003 -26.27736 -24.69932 -23.67724 -22.89734 -20.78130 -20.54346 -20.39092 -19.64752 -17.94283 -16.95208 -16.74352 -15.92306 -15.55661 -15.36818 -15.09741 -14.45964 -14.28847 -14.10098 -13.92921 -13.88583 -13.45780 -13.17430 -13.11838 -12.58363 -12.53328 -12.11460 -11.68207 -11.50245 -11.46000 -11.34774 -11.19596 -10.83913 -10.67781 -10.36232 -10.23375 -9.95766 -9.92655 -9.71817 -9.30419 -9.01036 -8.61184 -8.60087 -8.35365 -6.09365 -4.09188 1.85987 2.98875 3.26389 3.33877 3.35287 3.55253 3.65130 4.36724 4.39137 4.48143 4.58029 4.69949 4.74378 4.82705 4.97313 5.09758 5.10061 5.23577 5.28004 5.31342 5.38742 5.43313 5.48092 5.56117 5.71514 5.80201 5.94737 6.10275 6.17266 6.21068 6.27447 6.35114 6.59443 6.64803 6.72001 6.76247 6.85368 7.08825 7.27119 7.33935 7.69495 8.34069 8.48238 8.94079 8.96787 9.50811 11.03691 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043623 B = 0.002488 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.712306 B =11251.345996 C =11400.629947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C 0.081 3.919 4 N -0.535 5.535 5 C 0.053 3.947 6 C -0.128 4.128 7 C 0.165 3.835 8 N -0.749 5.749 9 C 0.699 3.301 10 O -0.595 6.595 11 N -0.743 5.743 12 C 0.149 3.851 13 C -0.022 4.022 14 C -0.521 4.521 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.123 4.123 23 C 0.059 3.941 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.393 0.607 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.035 9.356 -13.405 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.175 4.175 3 C -0.046 4.046 4 N -0.260 5.260 5 C -0.075 4.075 6 C -0.167 4.167 7 C 0.059 3.941 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.474 6.474 11 N -0.397 5.397 12 C 0.026 3.974 13 C -0.060 4.060 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.134 4.134 17 N -0.537 5.537 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.161 4.161 23 C -0.069 4.069 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.226 0.774 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.750 8.692 -13.704 29.596 hybrid contribution 0.041 0.882 0.847 1.224 sum -24.709 9.574 -12.856 29.453 Atomic orbital electron populations 1.23836 0.95785 1.01953 1.00301 1.22960 0.96140 0.98177 1.00259 1.21251 0.95120 0.96241 0.92010 1.62126 1.18887 1.03199 1.41783 1.22178 0.95947 0.91999 0.97356 1.22023 0.97261 0.99494 0.97913 1.20758 0.91766 0.94387 0.87208 1.45196 1.26939 1.49672 1.18592 1.16055 0.79861 0.80662 0.83511 1.90896 1.71713 1.44730 1.40053 1.45530 1.28768 1.49697 1.15657 1.21361 0.82737 0.93806 0.99515 1.19796 0.96737 0.97722 0.91698 1.20925 1.06743 1.26099 1.02223 0.90597 1.25007 0.94660 0.95308 0.98394 1.69905 1.16086 1.40403 1.27313 0.86739 0.78332 0.81451 0.82461 1.20250 1.21310 1.19115 1.21862 0.98222 0.97206 0.98850 1.22035 0.93997 0.94083 0.96809 0.88499 0.88348 0.87016 0.93899 0.90216 0.89940 0.94558 0.90632 0.91023 0.89829 0.77353 0.77612 0.92214 0.92213 0.96052 0.96475 0.92580 0.90726 0.90477 0.94442 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 14.32 29.02 0.42 -0.71 16 2 C -0.16 -1.11 8.56 -36.02 -0.31 -1.42 16 3 C 0.08 0.58 5.72 -4.97 -0.03 0.55 16 4 N -0.54 -4.51 4.80 -236.11 -1.13 -5.64 16 5 C 0.05 0.49 5.00 -3.83 -0.02 0.48 16 6 C -0.13 -1.39 5.68 -26.65 -0.15 -1.54 16 7 C 0.16 1.82 2.52 -67.81 -0.17 1.65 16 8 N -0.75 -9.13 5.09 -58.55 -0.30 -9.43 16 9 C 0.70 11.87 8.54 -86.93 -0.74 11.13 16 10 O -0.60 -12.59 16.00 5.28 0.08 -12.51 16 11 N -0.74 -12.55 5.56 -65.23 -0.36 -12.91 16 12 C 0.15 3.11 5.61 -4.04 -0.02 3.09 16 13 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 14 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 15 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 18 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 22 C -0.12 -1.00 5.57 -26.65 -0.15 -1.15 16 23 C 0.06 0.45 5.42 -3.83 -0.02 0.43 16 24 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 25 H 0.10 0.53 8.06 -52.49 -0.42 0.10 16 26 H 0.11 0.78 6.47 -52.49 -0.34 0.44 16 27 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.08 0.51 7.79 -51.93 -0.40 0.11 16 29 H 0.08 0.72 5.79 -51.93 -0.30 0.41 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.12 7.57 -51.93 -0.39 0.73 16 34 H 0.39 3.69 8.62 -40.82 -0.35 3.33 16 35 H 0.39 5.45 8.49 -40.82 -0.35 5.10 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -33.01 352.90 -9.58 -42.59 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.55 Total: 4.12 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.74 Total: -1.30 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -1.02 Total: -54.71 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.01 -9.58 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273530334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.241 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds