Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47233 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.46948 * 59.99916 * 3 2 1 7 7 C 1.37881 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00377 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47278 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47064 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99681 * 179.97438 * 12 11 10 14 14 O 1.21585 * 120.00253 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99854 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99720 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46762 * 180.02562 * 16 15 13 18 18 N 1.46899 * 109.46922 * 185.54090 * 17 16 15 19 19 C 1.46845 * 110.99994 * 306.52367 * 18 17 16 20 20 C 1.50142 * 110.27503 * 287.53472 * 19 18 17 21 21 C 1.29819 * 123.28556 * 342.92806 * 20 19 18 22 22 C 1.50307 * 122.89258 * 0.41851 * 21 20 19 23 23 C 1.47234 * 110.99892 * 183.58985 * 18 17 16 24 24 H 0.97000 * 120.00052 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46869 * 60.00698 * 9 7 2 26 26 H 1.08999 * 109.47579 * 300.00056 * 9 7 2 27 27 H 1.09000 * 109.47026 * 60.00633 * 10 9 7 28 28 H 1.09002 * 109.47537 * 300.00486 * 10 9 7 29 29 H 1.09000 * 109.46714 * 60.00272 * 11 10 9 30 30 H 1.09002 * 109.47094 * 300.00587 * 11 10 9 31 31 H 0.96992 * 120.00432 * 0.02562 * 12 11 10 32 32 H 0.96999 * 119.99958 * 0.02562 * 15 13 12 33 33 H 1.08991 * 109.47316 * 60.00408 * 16 15 13 34 34 H 1.08998 * 109.46954 * 299.99778 * 16 15 13 35 35 H 1.09006 * 109.46969 * 65.54582 * 17 16 15 36 36 H 1.08993 * 109.47358 * 305.54357 * 17 16 15 37 37 H 1.08996 * 109.33656 * 47.78477 * 19 18 17 38 38 H 1.09001 * 109.33265 * 167.45169 * 19 18 17 39 39 H 1.08001 * 118.35277 * 162.94825 * 20 19 18 40 40 H 1.08001 * 118.55297 * 180.39105 * 21 20 19 41 41 H 1.09003 * 109.41805 * 223.39221 * 22 21 20 42 42 H 1.09004 * 109.44404 * 103.54318 * 22 21 20 43 43 H 1.09004 * 109.63625 * 174.27926 * 23 18 17 44 44 H 1.09000 * 109.64230 * 294.89043 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 7 2.4323 -6.1006 -0.0031 13 6 1.9830 -7.3713 -0.0032 14 8 0.7876 -7.5935 -0.0023 15 7 2.8588 -8.3957 -0.0043 16 6 2.3704 -9.7770 -0.0050 17 6 3.5605 -10.7387 -0.0055 18 7 3.0748 -12.1185 -0.1399 19 6 2.0656 -12.4232 0.8823 20 6 2.7143 -12.5595 2.2295 21 6 3.9895 -12.7411 2.3911 22 6 4.9542 -12.8250 1.2415 23 6 4.1873 -13.0796 -0.0587 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8725 -3.6048 0.8878 28 1 2.8713 -3.6040 -0.8922 29 1 0.8533 -5.0442 -0.8923 30 1 0.8539 -5.0455 0.8877 31 1 3.3859 -5.9234 -0.0027 32 1 3.8124 -8.2185 -0.0046 33 1 1.7645 -9.9477 -0.8947 34 1 1.7653 -9.9488 0.8852 35 1 4.1105 -10.6366 0.9300 36 1 4.2185 -10.5020 -0.8416 37 1 1.3309 -11.6187 0.9152 38 1 1.5659 -13.3581 0.6287 39 1 2.0886 -12.5039 3.1080 40 1 4.3743 -12.8356 3.3958 41 1 5.6548 -13.6419 1.4152 42 1 5.5044 -11.8875 1.1603 43 1 3.7938 -14.0962 -0.0588 44 1 4.8537 -12.9416 -0.9101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280939973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -19.648722 kcal Electronic energy + Delta-G solvation = -21224.894942 eV Core-core repulsion = 17984.094362 eV Total energy + Delta-G solvation = -3240.800580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30357 -39.55099 -35.76922 -34.87649 -33.34759 -32.96455 -31.47278 -31.10919 -29.06339 -26.57816 -25.00875 -23.60548 -22.85732 -21.95071 -20.82961 -20.36718 -18.41993 -17.55147 -17.07904 -16.58356 -16.20490 -15.86865 -15.33988 -15.13588 -14.78091 -14.45167 -14.21554 -13.93962 -13.83820 -13.72332 -13.06231 -12.87421 -12.50133 -12.27915 -12.15612 -11.86168 -11.77479 -11.67630 -11.26112 -11.08620 -10.90850 -10.70684 -10.55610 -10.09650 -9.84297 -9.47597 -9.43049 -9.16358 -9.09711 -8.73007 -8.56725 -8.36322 -6.00738 -4.03676 1.79244 2.73826 3.30544 3.37981 3.40651 3.41466 3.60548 4.33227 4.41406 4.46889 4.48593 4.53676 4.68019 4.72009 4.82839 5.00650 5.14487 5.25652 5.30141 5.35037 5.39355 5.40709 5.56441 5.66094 5.71778 5.78195 5.84305 6.08505 6.20985 6.36314 6.46099 6.54887 6.55769 6.64839 6.65661 6.83034 7.04544 7.09482 7.65694 7.78529 7.98488 8.17597 8.39419 8.78351 9.03306 9.60379 11.10596 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045126 B = 0.002144 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.339462 B =13055.786335 C =13258.036995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.701 3.299 14 O -0.592 6.592 15 N -0.751 5.751 16 C 0.140 3.860 17 C 0.037 3.963 18 N -0.522 5.522 19 C 0.066 3.934 20 C -0.185 4.185 21 C -0.159 4.159 22 C -0.131 4.131 23 C 0.052 3.948 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.059 -27.803 1.964 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.470 6.470 15 N -0.408 5.408 16 C 0.015 3.985 17 C -0.091 4.091 18 N -0.244 5.244 19 C -0.062 4.062 20 C -0.205 4.205 21 C -0.177 4.177 22 C -0.169 4.169 23 C -0.076 4.076 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.226 0.774 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.526 -27.921 1.472 29.538 hybrid contribution 1.766 1.190 1.034 2.367 sum 11.292 -26.731 2.506 29.126 Atomic orbital electron populations 1.69978 1.06045 1.26557 1.50671 1.25041 0.94867 0.99318 0.95336 0.86526 0.80023 0.83778 0.77586 1.19785 1.21012 1.21017 1.21244 0.93013 0.90939 1.50744 0.92610 1.19039 0.93878 0.90825 0.97714 1.21888 0.99776 0.93344 1.00801 1.21510 0.91299 0.84133 1.01888 1.45376 1.10423 1.04440 1.79366 1.15972 0.85245 0.80736 0.78003 1.90921 1.14131 1.84126 1.57851 1.44994 1.08903 1.05274 1.81654 1.21155 0.95705 0.78884 1.02781 1.22336 0.97025 0.88193 1.01560 1.62705 1.12862 1.02036 1.46833 1.21324 0.94963 1.03131 0.86738 1.22919 0.96756 1.00901 0.99899 1.22139 0.94973 1.01475 0.99148 1.21115 0.98242 1.02748 0.94845 1.22281 0.92395 0.96613 0.96322 0.92988 0.96214 0.96231 0.92802 0.92768 0.91930 0.91992 0.77356 0.77351 0.90773 0.91647 0.93328 0.89999 0.88704 0.89188 0.87315 0.87733 0.90404 0.90496 0.90171 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -10.96 5.56 -65.22 -0.36 -11.32 16 13 C 0.70 10.98 8.57 -86.92 -0.74 10.24 16 14 O -0.59 -11.95 16.34 5.29 0.09 -11.86 16 15 N -0.75 -8.30 5.56 -65.22 -0.36 -8.66 16 16 C 0.14 1.43 5.06 -4.03 -0.02 1.41 16 17 C 0.04 0.28 4.62 -3.82 -0.02 0.26 16 18 N -0.52 -3.96 5.13 -236.11 -1.21 -5.17 16 19 C 0.07 0.49 5.69 -5.28 -0.03 0.46 16 20 C -0.19 -1.35 9.52 -35.96 -0.34 -1.69 16 21 C -0.16 -1.09 9.32 -35.88 -0.33 -1.42 16 22 C -0.13 -0.74 5.52 -28.03 -0.15 -0.90 16 23 C 0.05 0.31 6.06 -3.59 -0.02 0.29 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 32 H 0.39 3.12 8.49 -40.82 -0.35 2.77 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.74 6.40 -51.93 -0.33 0.41 16 35 H 0.05 0.37 5.56 -51.93 -0.29 0.08 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.77 5.64 -51.93 -0.29 0.48 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.10 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.44 6.86 -51.93 -0.36 0.08 16 43 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -33.50 352.84 -10.62 -44.12 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.42 Total: 1.66 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.38 Total: -4.41 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -1.20 Total: -51.37 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.50 -10.62 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280939973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.471 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds