Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47113 * 2 1 4 4 N 1.46501 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00094 * 264.54617 * 4 3 2 6 6 H 1.08005 * 119.99365 * 148.12142 * 5 4 3 7 7 C 1.38803 * 120.00283 * 328.12739 * 5 4 3 8 8 N 1.31627 * 120.00010 * 153.18806 * 7 5 4 9 9 Si 1.86803 * 120.00239 * 333.18795 * 7 5 4 10 10 H 1.48500 * 109.47134 * 95.22752 * 9 7 5 11 11 H 1.48497 * 109.47453 * 215.23110 * 9 7 5 12 12 H 1.48504 * 109.46979 * 335.22963 * 9 7 5 13 13 C 1.46503 * 119.99973 * 84.55231 * 4 3 2 14 14 C 1.50704 * 109.47006 * 84.79120 * 13 4 3 15 15 C 1.35315 * 126.13136 * 264.98017 * 14 13 4 16 16 C 1.39866 * 107.92011 * 180.02562 * 15 14 13 17 17 N 1.30841 * 108.20568 * 359.73924 * 16 15 14 18 18 N 1.34944 * 126.12227 * 85.00725 * 14 13 4 19 19 C 1.46503 * 126.04162 * 359.95110 * 18 14 13 20 20 C 1.53005 * 109.46851 * 95.03928 * 19 18 14 21 21 C 1.52999 * 109.46906 * 175.34343 * 20 19 18 22 22 O 1.42898 * 109.47028 * 180.02562 * 21 20 19 23 23 C 1.42906 * 114.00100 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46439 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47456 * 299.99925 * 1 2 3 26 26 H 1.08993 * 109.46865 * 60.00209 * 1 2 3 27 27 H 1.08997 * 109.47456 * 240.00075 * 2 1 3 28 28 H 1.09007 * 109.46927 * 119.99841 * 2 1 3 29 29 H 1.09010 * 109.46997 * 60.00046 * 3 2 1 30 30 H 1.08999 * 109.47580 * 300.00136 * 3 2 1 31 31 H 0.97005 * 119.99477 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46680 * 324.79933 * 13 4 3 33 33 H 1.08990 * 109.47325 * 204.79509 * 13 4 3 34 34 H 1.08001 * 126.03704 * 0.02562 * 15 14 13 35 35 H 1.08006 * 125.89812 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47122 * 335.04705 * 19 18 14 37 37 H 1.08997 * 109.47193 * 215.04307 * 19 18 14 38 38 H 1.09000 * 109.46800 * 55.34963 * 20 19 18 39 39 H 1.08997 * 109.47193 * 295.34558 * 20 19 18 40 40 H 1.08997 * 109.47370 * 300.00106 * 21 20 19 41 41 H 1.09000 * 109.46885 * 60.00671 * 21 20 19 42 42 H 1.08995 * 109.47322 * 300.00329 * 23 22 21 43 43 H 1.09003 * 109.46689 * 60.00647 * 23 22 21 44 44 H 1.08996 * 109.47273 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5554 1.1814 6 1 5.1470 1.0704 1.2990 7 6 3.6518 2.2930 2.2272 8 7 3.9762 2.0057 3.4701 9 14 2.4681 3.6935 1.8709 10 1 1.0714 3.2001 1.9763 11 1 2.6828 4.7855 2.8540 12 1 2.7090 4.2083 0.4989 13 6 4.2380 1.3219 -1.2621 14 6 4.3777 2.6830 -1.8938 15 6 3.5606 3.2147 -2.8322 16 6 4.0405 4.4900 -3.1480 17 7 5.1042 4.7180 -2.4212 18 7 5.3405 3.5896 -1.6254 19 6 6.4359 3.4254 -0.6664 20 6 7.6812 2.9182 -1.3965 21 6 8.8562 2.8573 -0.4186 22 8 10.0194 2.3842 -1.1006 23 6 11.1805 2.2899 -0.2729 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.6009 2.5215 4.2009 32 1 3.6927 0.6623 -1.9371 33 1 5.2275 0.9074 -1.0696 34 1 2.6914 2.7385 -3.2614 35 1 3.6056 5.1706 -3.8651 36 1 6.1445 2.7052 0.0982 37 1 6.6550 4.3846 -0.1974 38 1 7.9241 3.5964 -2.2145 39 1 7.4882 1.9223 -1.7952 40 1 9.0492 3.8532 -0.0199 41 1 8.6133 2.1791 0.3994 42 1 11.4212 3.2741 0.1288 43 1 10.9862 1.5999 0.5482 44 1 12.0198 1.9242 -0.8644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282792382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = 43.532070 kcal Electronic energy + Delta-G solvation = -23079.507986 eV Core-core repulsion = 19841.447131 eV Total energy + Delta-G solvation = -3238.060855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61043 -37.95365 -36.55136 -34.41144 -32.74918 -31.99992 -30.47028 -29.67323 -26.90338 -26.20963 -25.59367 -24.78276 -22.03990 -21.77533 -20.79795 -20.43071 -18.92072 -16.88123 -16.55708 -16.14465 -15.87356 -15.42761 -15.10765 -14.68971 -14.35761 -14.04594 -13.76103 -13.49939 -13.08147 -13.04385 -12.95903 -12.43693 -12.08215 -11.98740 -11.92712 -11.75337 -11.61026 -11.29815 -11.07365 -10.91875 -10.82471 -10.75706 -10.49851 -10.27510 -9.99314 -9.79487 -9.67124 -9.50636 -8.76736 -8.56111 -7.91557 -7.11473 -6.16325 -3.50097 2.50787 3.03589 3.24319 3.41659 3.42293 3.52912 3.84306 4.42030 4.89224 4.97534 5.09539 5.18369 5.23694 5.29106 5.31019 5.39656 5.47097 5.54137 5.59202 5.63396 5.67481 5.73416 5.77457 5.90234 5.96354 6.13190 6.14908 6.21071 6.23896 6.35652 6.40272 6.43823 6.51781 6.55715 6.80335 6.86455 7.04815 7.12156 7.25719 7.68799 7.84745 8.15862 8.34975 8.79398 9.55744 9.94426 10.97776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.005902 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.875358 B = 4742.633792 C = 5421.032006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.135 3.865 4 N -0.592 5.592 5 C -0.276 4.276 6 H 0.083 0.917 7 C 0.043 3.957 8 N -0.887 5.887 9 Si 0.865 3.135 10 H -0.284 1.284 11 H -0.302 1.302 12 H -0.266 1.266 13 C 0.198 3.802 14 C 0.097 3.903 15 C -0.295 4.295 16 C 0.038 3.962 17 N -0.318 5.318 18 N -0.352 5.352 19 C 0.129 3.871 20 C -0.130 4.130 21 C 0.065 3.935 22 O -0.393 6.393 23 C 0.032 3.968 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.171 0.829 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -0.699 -8.589 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.010 3.990 4 N -0.312 5.312 5 C -0.404 4.404 6 H 0.101 0.899 7 C -0.159 4.159 8 N -0.527 5.527 9 Si 0.695 3.305 10 H -0.212 1.212 11 H -0.231 1.231 12 H -0.190 1.190 13 C 0.070 3.930 14 C -0.035 4.035 15 C -0.325 4.325 16 C -0.148 4.148 17 N -0.139 5.139 18 N -0.134 5.134 19 C 0.008 3.992 20 C -0.168 4.168 21 C -0.012 4.012 22 O -0.312 6.312 23 C -0.065 4.065 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.188 0.812 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.239 0.105 -8.182 9.716 hybrid contribution -1.418 0.640 0.088 1.558 sum 3.821 0.745 -8.093 8.981 Atomic orbital electron populations 1.21738 0.97226 1.00644 1.01137 1.21991 0.93925 0.99881 1.01920 1.21222 0.83638 0.94495 0.99615 1.44272 1.00675 1.84657 1.01618 1.18742 1.06196 1.27374 0.88042 0.89941 1.25306 0.97808 0.97705 0.95040 1.69916 1.45471 1.39156 0.98182 0.87164 0.80835 0.83961 0.78535 1.21211 1.23058 1.19043 1.19760 0.97703 0.87805 0.87766 1.22738 0.89491 0.96282 0.94986 1.21103 1.05948 0.97935 1.07510 1.23607 0.94823 0.96900 0.99462 1.77180 1.19939 1.07746 1.09039 1.48341 1.21861 1.11233 1.31919 1.21682 0.83648 1.04042 0.89861 1.21845 0.92855 1.03067 0.99050 1.22418 0.85155 0.98644 0.95031 1.87847 1.18731 1.87317 1.37347 1.22726 0.88050 1.00240 0.95444 0.93430 0.93180 0.93431 0.92948 0.91394 0.92441 0.94297 0.92550 0.91291 0.91450 0.84662 0.81170 0.85982 0.89767 0.90792 0.90630 0.93059 0.92256 0.94167 0.93843 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.46 6.26 -26.73 -0.17 -2.63 16 3 C 0.14 2.82 4.40 -4.04 -0.02 2.80 16 4 N -0.59 -12.91 2.15 -174.61 -0.38 -13.29 16 5 C -0.28 -6.94 8.35 -15.06 -0.13 -7.07 16 6 H 0.08 2.19 7.89 -52.48 -0.41 1.77 16 7 C 0.04 1.18 5.23 -17.43 -0.09 1.08 16 8 N -0.89 -25.45 13.97 55.49 0.78 -24.67 16 9 Si 0.87 21.94 25.12 -169.99 -4.27 17.67 16 10 H -0.28 -7.03 6.59 56.52 0.37 -6.66 16 11 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 12 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.20 3.68 5.61 -5.19 -0.03 3.65 16 14 C 0.10 1.86 6.51 -82.26 -0.54 1.32 16 15 C -0.29 -5.30 10.72 -40.01 -0.43 -5.73 16 16 C 0.04 0.66 12.02 -17.36 -0.21 0.45 16 17 N -0.32 -6.29 12.58 30.63 0.39 -5.91 16 18 N -0.35 -6.88 3.61 -57.14 -0.21 -7.08 16 19 C 0.13 2.26 6.20 -4.04 -0.03 2.24 16 20 C -0.13 -1.93 5.91 -26.73 -0.16 -2.09 16 21 C 0.06 0.87 5.94 37.16 0.22 1.09 16 22 O -0.39 -5.46 10.70 -35.23 -0.38 -5.83 16 23 C 0.03 0.33 11.01 101.05 1.11 1.44 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.35 3.13 -51.92 -0.16 1.19 16 30 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 34 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.17 2.35 8.06 -52.48 -0.42 1.93 16 36 H 0.12 2.33 5.71 -51.93 -0.30 2.04 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -30.54 357.87 -6.38 -36.92 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.62 Total: 2.15 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.09 Total: -5.35 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.58 Total: -50.95 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.38 Total: -5.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.27 Total: 17.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.54 -6.38 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282792382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.450 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds