Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99863 * 2 1 4 4 C 1.52998 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47485 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47291 * 180.02562 * 5 4 3 7 7 N 1.40084 * 126.03708 * 270.28671 * 6 5 4 8 8 C 1.30834 * 108.20770 * 180.17238 * 7 6 5 9 9 C 1.39876 * 108.20073 * 359.58566 * 8 7 6 10 10 C 1.34947 * 126.04040 * 90.00121 * 6 5 4 11 11 C 1.50709 * 126.12449 * 359.96194 * 10 6 5 12 12 N 1.46896 * 109.46807 * 275.01920 * 11 10 6 13 13 C 1.46900 * 111.00451 * 293.95210 * 12 11 10 14 14 C 1.46905 * 110.99693 * 169.99895 * 12 11 10 15 15 H 1.09005 * 109.46875 * 60.00206 * 14 12 11 16 16 C 1.52998 * 109.47428 * 300.00117 * 14 12 11 17 17 C 1.50705 * 109.46951 * 179.97438 * 14 12 11 18 18 H 1.07996 * 120.00041 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99865 * 180.02562 * 17 14 12 20 20 N 1.31520 * 119.99696 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00193 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46705 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47228 * 119.99840 * 21 19 17 24 24 H 1.48502 * 109.46905 * 240.00233 * 21 19 17 25 25 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47602 * 300.00072 * 1 2 3 27 27 H 1.09001 * 109.47077 * 60.00575 * 1 2 3 28 28 H 1.09004 * 109.47386 * 59.99717 * 3 2 1 29 29 H 1.08995 * 109.46949 * 299.99730 * 3 2 1 30 30 H 1.09004 * 109.46888 * 59.99707 * 4 3 2 31 31 H 1.08999 * 109.47054 * 300.00395 * 4 3 2 32 32 H 1.08996 * 109.47581 * 60.00002 * 5 4 3 33 33 H 1.09011 * 109.47029 * 299.99940 * 5 4 3 34 34 H 1.08002 * 125.90318 * 179.85840 * 8 7 6 35 35 H 1.07992 * 126.04019 * 180.28605 * 9 8 7 36 36 H 1.08997 * 109.47131 * 35.01760 * 11 10 6 37 37 H 1.08995 * 109.46840 * 155.01995 * 11 10 6 38 38 H 1.09004 * 109.46759 * 60.00386 * 13 12 11 39 39 H 1.08994 * 109.47387 * 179.97438 * 13 12 11 40 40 H 1.09001 * 109.47037 * 300.00392 * 13 12 11 41 41 H 1.08998 * 109.47053 * 179.97438 * 16 14 12 42 42 H 1.08995 * 109.46661 * 300.00139 * 16 14 12 43 43 H 1.09002 * 109.47088 * 59.99770 * 16 14 12 44 44 H 0.97004 * 119.99483 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 7 5.6181 2.4667 0.0013 7 7 6.4392 2.3955 1.1340 8 6 7.6812 2.3031 0.7335 9 6 7.6904 2.3029 -0.6652 10 6 6.4096 2.4046 -1.0899 11 6 5.9495 2.4409 -2.5246 12 7 5.5768 1.0863 -2.9536 13 6 6.7499 0.2026 -2.9851 14 6 4.9035 1.1141 -4.2589 15 1 5.5726 1.5450 -5.0038 16 6 3.6350 1.9639 -4.1605 17 6 4.5377 -0.2902 -4.6655 18 1 4.7807 -1.1202 -4.0188 19 6 3.8928 -0.5152 -5.8632 20 7 3.5973 0.4956 -6.6510 21 14 3.4387 -2.2558 -6.3669 22 1 3.8786 -3.2063 -5.3142 23 1 1.9669 -2.3533 -6.5389 24 1 4.1102 -2.5914 -7.6482 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6439 0.8908 32 1 3.8357 3.1231 0.8912 33 1 3.8364 3.1236 -0.8888 34 1 8.5493 2.2340 1.3724 35 1 8.5650 2.2336 -1.2949 36 1 5.0861 3.1003 -2.6126 37 1 6.7566 2.8128 -3.1556 38 1 7.1884 0.1453 -1.9889 39 1 6.4456 -0.7938 -3.3055 40 1 7.4858 0.6004 -3.6838 41 1 3.1357 1.9849 -5.1292 42 1 2.9660 1.5330 -3.4157 43 1 3.9000 2.9796 -3.8666 44 1 3.1433 0.3373 -7.4935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282798477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = 37.063528 kcal Electronic energy + Delta-G solvation = -23252.586455 eV Core-core repulsion = 20014.245103 eV Total energy + Delta-G solvation = -3238.341352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97839 -37.85019 -36.99361 -34.55171 -33.00732 -30.96168 -30.24806 -28.96428 -26.93080 -26.80029 -24.96287 -24.63984 -23.20120 -21.84133 -20.75142 -19.87134 -18.97668 -16.78327 -16.24937 -16.10518 -15.97680 -15.20205 -15.06763 -14.57537 -14.40614 -14.07694 -13.74868 -13.64304 -13.29107 -13.05907 -12.54176 -12.10250 -12.07119 -11.97095 -11.87148 -11.67009 -11.15489 -11.05768 -10.95696 -10.76060 -10.70190 -10.63215 -10.33740 -10.20366 -10.08743 -9.90364 -9.55742 -9.05138 -8.87998 -8.46725 -8.19767 -7.27671 -6.05199 -4.09026 2.16501 2.75797 3.12707 3.28194 3.36414 3.41830 3.89223 4.39355 4.73853 4.92649 5.09741 5.16180 5.19845 5.26587 5.29682 5.32978 5.38433 5.42585 5.52435 5.57631 5.58439 5.72060 5.96223 6.00277 6.02122 6.23469 6.24093 6.37657 6.49875 6.53802 6.72813 6.80325 6.94377 6.95498 7.07119 7.25137 7.33918 7.43362 7.62425 7.79259 8.02361 8.11750 8.25048 8.51334 8.97503 9.56329 11.01722 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.006512 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.743141 B = 4298.933298 C = 5913.553345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.070 3.930 4 C -0.140 4.140 5 C 0.144 3.856 6 N -0.357 5.357 7 N -0.308 5.308 8 C 0.042 3.958 9 C -0.283 4.283 10 C 0.119 3.881 11 C 0.103 3.897 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.213 3.787 15 H 0.000 1.000 16 C -0.134 4.134 17 C -0.500 4.500 18 H 0.065 0.935 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.177 0.823 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.012 0.988 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.006 0.994 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 4.945 11.439 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.007 4.007 4 C -0.178 4.178 5 C 0.022 3.978 6 N -0.139 5.139 7 N -0.130 5.130 8 C -0.143 4.143 9 C -0.313 4.313 10 C -0.010 4.010 11 C -0.027 4.027 12 N -0.254 5.254 13 C -0.113 4.113 14 C 0.107 3.893 15 H 0.018 0.982 16 C -0.192 4.192 17 C -0.539 4.539 18 H 0.083 0.917 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.194 0.806 35 H 0.158 0.842 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.025 0.975 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.329 4.697 12.609 13.521 hybrid contribution 0.641 -0.411 -1.648 1.816 sum -0.688 4.286 10.960 11.789 Atomic orbital electron populations 1.22718 0.81271 1.02671 0.99725 1.87918 1.19441 1.27694 1.95338 1.22330 0.93553 0.84967 0.99860 1.21914 0.93137 0.96873 1.05883 1.21406 0.74749 0.97990 1.03618 1.48439 1.06158 1.56039 1.03246 1.77262 1.01851 1.25383 1.08471 1.23685 0.95123 1.00476 0.95011 1.21179 0.96497 1.18736 0.94849 1.21199 0.90771 0.98311 0.90685 1.20766 0.99947 0.94506 0.87443 1.62159 1.24712 1.05478 1.33043 1.22269 0.91285 0.98918 0.98863 1.19274 0.91069 0.96539 0.82391 0.98225 1.21882 0.99729 0.94600 1.02973 1.21160 1.37341 0.92012 1.03338 0.91715 1.24907 0.95775 0.97051 0.96403 1.69897 1.41839 1.29974 1.11631 0.86481 0.78118 0.84735 0.78353 1.19686 1.21049 1.21173 0.89755 0.94510 0.93867 0.93855 0.92778 0.87538 0.91026 0.89533 0.88890 0.80628 0.84173 0.89734 0.93262 0.93305 0.90403 0.96931 0.89499 0.94589 0.97535 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.39 -6.01 10.70 -35.23 -0.38 -6.39 16 3 C 0.07 0.95 5.94 37.16 0.22 1.17 16 4 C -0.14 -2.11 5.91 -26.74 -0.16 -2.26 16 5 C 0.14 1.98 6.24 -4.05 -0.03 1.96 16 6 N -0.36 -5.73 3.61 -57.14 -0.21 -5.93 16 7 N -0.31 -5.04 12.58 30.63 0.39 -4.66 16 8 C 0.04 0.61 12.03 -17.36 -0.21 0.40 16 9 C -0.28 -4.29 9.69 -40.01 -0.39 -4.68 16 10 C 0.12 1.96 5.67 -82.26 -0.47 1.49 16 11 C 0.10 1.80 4.95 -4.97 -0.02 1.77 16 12 N -0.53 -10.75 4.50 -237.72 -1.07 -11.82 16 13 C 0.04 0.69 9.04 60.06 0.54 1.23 16 14 C 0.21 5.08 2.06 -68.86 -0.14 4.94 16 15 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 16 C -0.13 -3.03 8.77 37.16 0.33 -2.71 16 17 C -0.50 -13.22 7.88 -34.44 -0.27 -13.49 16 18 H 0.06 1.74 6.40 -52.49 -0.34 1.40 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 21 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.11 1.98 8.03 -51.93 -0.42 1.57 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.20 7.15 -51.92 -0.37 0.83 16 34 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.08 1.44 4.93 -51.93 -0.26 1.18 16 37 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 39 H 0.08 1.65 6.10 -51.93 -0.32 1.33 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.01 0.12 6.20 -51.93 -0.32 -0.21 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -29.73 353.45 -7.22 -36.95 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.30 Total: 1.76 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 0.42 Total: -7.17 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.26 Total: -46.54 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.38 Total: -6.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.73 -7.22 -36.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282798477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.011 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds