Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99803 * 2 1 4 4 C 1.53007 * 109.46848 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46771 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46938 * 184.77242 * 5 4 3 7 7 N 1.40084 * 126.03816 * 275.47381 * 6 5 4 8 8 C 1.30836 * 108.20667 * 180.16932 * 7 6 5 9 9 C 1.39869 * 108.20259 * 359.58964 * 8 7 6 10 10 C 1.34947 * 126.03727 * 95.18465 * 6 5 4 11 11 C 1.50701 * 126.12828 * 0.03373 * 10 6 5 12 12 N 1.46896 * 109.46891 * 84.36549 * 11 10 6 13 13 C 1.46895 * 111.00030 * 66.73638 * 12 11 10 14 14 C 1.46900 * 110.99895 * 190.69155 * 12 11 10 15 15 H 1.09002 * 109.46936 * 299.99984 * 14 12 11 16 16 C 1.52994 * 109.47213 * 60.00102 * 14 12 11 17 17 C 1.50701 * 109.47077 * 180.02562 * 14 12 11 18 18 H 1.08000 * 120.00216 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00004 * 179.97438 * 17 14 12 20 20 N 1.31520 * 120.00284 * 180.02562 * 19 17 14 21 21 Si 1.86801 * 119.99945 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.47114 * 90.00122 * 21 19 17 23 23 H 1.48500 * 109.47211 * 210.00052 * 21 19 17 24 24 H 1.48495 * 109.47173 * 330.00207 * 21 19 17 25 25 H 1.08997 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47026 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47367 * 59.99596 * 1 2 3 28 28 H 1.08994 * 109.47164 * 60.00655 * 3 2 1 29 29 H 1.09001 * 109.47057 * 300.00095 * 3 2 1 30 30 H 1.09008 * 109.46648 * 60.00229 * 4 3 2 31 31 H 1.08988 * 109.47016 * 300.00096 * 4 3 2 32 32 H 1.09000 * 109.47149 * 64.77396 * 5 4 3 33 33 H 1.08995 * 109.47993 * 304.77244 * 5 4 3 34 34 H 1.08004 * 125.90283 * 179.85074 * 8 7 6 35 35 H 1.07999 * 126.04086 * 180.28591 * 9 8 7 36 36 H 1.08993 * 109.47047 * 204.36616 * 11 10 6 37 37 H 1.09003 * 109.46830 * 324.36737 * 11 10 6 38 38 H 1.09003 * 109.47404 * 65.55836 * 13 12 11 39 39 H 1.09000 * 109.47682 * 185.55283 * 13 12 11 40 40 H 1.08997 * 109.47908 * 305.55426 * 13 12 11 41 41 H 1.09002 * 109.47266 * 60.00083 * 16 14 12 42 42 H 1.09002 * 109.47389 * 180.02562 * 16 14 12 43 43 H 1.08996 * 109.47093 * 300.00035 * 16 14 12 44 44 H 0.96994 * 120.00370 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6137 2.4686 -0.1168 7 7 6.5104 2.2591 0.9389 8 6 7.7211 2.2175 0.4447 9 6 7.6338 2.3895 -0.9406 10 6 6.3275 2.5417 -1.2597 11 6 5.7700 2.7554 -2.6434 12 7 5.5832 4.1932 -2.8793 13 6 6.8749 4.8911 -2.9269 14 6 4.8117 4.4293 -4.1069 15 1 5.3424 4.0017 -4.9575 16 6 3.4368 3.7703 -3.9799 17 6 4.6412 5.9121 -4.3156 18 1 5.0634 6.6092 -3.6071 19 6 3.9463 6.3786 -5.4113 20 7 3.7979 7.6726 -5.5938 21 14 3.2167 5.1728 -6.6373 22 1 1.8350 4.8202 -6.2226 23 1 3.1852 5.7953 -7.9852 24 1 4.0497 3.9441 -6.6789 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8910 31 1 3.8574 0.6436 0.8890 32 1 3.9057 3.0927 0.9283 33 1 3.7697 3.1525 -0.8453 34 1 8.6306 2.0710 1.0085 35 1 8.4623 2.3988 -1.6332 36 1 6.4646 2.3534 -3.3810 37 1 4.8109 2.2451 -2.7314 38 1 7.4406 4.5499 -3.7939 39 1 6.7051 5.9651 -3.0037 40 1 7.4376 4.6765 -2.0184 41 1 2.9060 4.1980 -3.1293 42 1 2.8645 3.9451 -4.8909 43 1 3.5604 2.6980 -3.8291 44 1 3.3087 8.0008 -6.3644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282798478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = 44.195628 kcal Electronic energy + Delta-G solvation = -22874.680215 eV Core-core repulsion = 19636.648133 eV Total energy + Delta-G solvation = -3238.032081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06221 -38.16520 -37.27415 -34.75427 -32.98267 -31.21497 -30.62317 -29.60811 -27.14104 -26.97422 -25.13985 -24.62642 -23.46830 -22.10584 -20.80417 -19.84277 -19.22575 -16.97009 -16.76367 -16.39615 -16.14364 -15.55850 -15.08473 -14.81199 -14.60171 -14.30908 -13.96088 -13.75702 -13.34266 -13.08560 -12.95165 -12.46974 -12.31184 -12.22207 -12.10081 -11.96575 -11.87658 -11.30762 -11.11114 -11.06631 -10.88369 -10.68068 -10.49877 -10.39846 -10.21384 -9.87504 -9.61247 -9.18755 -9.00520 -8.64004 -8.28714 -7.50684 -6.13759 -4.13228 2.08808 2.64342 3.05682 3.19223 3.29548 3.32480 3.60515 4.32180 4.61889 4.70381 4.84539 4.93819 4.98508 5.02237 5.12944 5.17641 5.19377 5.27026 5.32467 5.40444 5.45164 5.49364 5.77829 5.79755 5.89387 5.98685 6.01757 6.05176 6.22143 6.28268 6.30649 6.43580 6.49476 6.67376 6.86515 6.87800 6.92949 7.13912 7.24941 7.46183 7.80595 7.92093 7.98479 8.55570 8.92901 9.47267 10.98814 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.005810 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.807829 B = 4817.841333 C = 6673.803837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.133 4.133 5 C 0.135 3.865 6 N -0.355 5.355 7 N -0.306 5.306 8 C 0.044 3.956 9 C -0.280 4.280 10 C 0.117 3.883 11 C 0.099 3.901 12 N -0.522 5.522 13 C 0.035 3.965 14 C 0.182 3.818 15 H 0.001 0.999 16 C -0.149 4.149 17 C -0.506 4.506 18 H 0.084 0.916 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.884 3.116 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.269 1.269 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -13.433 9.546 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.172 4.172 5 C 0.013 3.987 6 N -0.137 5.137 7 N -0.127 5.127 8 C -0.142 4.142 9 C -0.310 4.310 10 C -0.011 4.011 11 C -0.030 4.030 12 N -0.247 5.247 13 C -0.113 4.113 14 C 0.075 3.925 15 H 0.018 0.982 16 C -0.206 4.206 17 C -0.545 4.545 18 H 0.102 0.898 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.194 1.194 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.195 0.805 35 H 0.159 0.841 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.799 -13.302 10.888 17.284 hybrid contribution 0.262 -0.572 -2.157 2.247 sum -1.536 -13.874 8.731 16.464 Atomic orbital electron populations 1.22748 0.80838 1.02709 1.00211 1.87856 1.19859 1.27944 1.95494 1.22414 0.93140 0.84856 1.00955 1.21868 0.93588 0.97369 1.04338 1.21549 0.74826 0.96978 1.05341 1.48390 1.06210 1.55166 1.03963 1.77277 0.99460 1.24538 1.11424 1.23702 0.95846 1.00370 0.94278 1.21192 0.95703 1.18101 0.96020 1.21093 0.91884 0.98521 0.89642 1.20809 1.00368 0.92882 0.88968 1.61983 1.18074 1.05090 1.39537 1.22288 0.89331 1.01051 0.98595 1.19723 0.89627 0.97553 0.85591 0.98174 1.22263 0.99755 0.97371 1.01240 1.20941 1.35090 0.89040 1.09384 0.89834 1.24916 0.95815 0.94940 0.97379 1.69871 1.41813 1.12412 1.29418 0.86912 0.79776 0.81419 0.80405 1.20552 1.22389 1.19405 0.89685 0.94027 0.93793 0.92839 0.92421 0.90615 0.90350 0.88965 0.87348 0.80525 0.84064 0.92956 0.89698 0.96559 0.90013 0.92868 0.92095 0.93755 0.95237 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.66 10.70 -35.23 -0.38 -5.04 16 3 C 0.06 0.68 5.94 37.16 0.22 0.90 16 4 C -0.13 -1.57 5.91 -26.73 -0.16 -1.72 16 5 C 0.13 1.76 6.21 -4.04 -0.03 1.73 16 6 N -0.36 -5.47 3.61 -57.14 -0.21 -5.68 16 7 N -0.31 -4.83 12.58 30.62 0.39 -4.45 16 8 C 0.04 0.60 12.03 -17.37 -0.21 0.40 16 9 C -0.28 -4.06 9.60 -40.01 -0.38 -4.45 16 10 C 0.12 1.84 5.69 -82.26 -0.47 1.37 16 11 C 0.10 1.62 4.66 -4.98 -0.02 1.60 16 12 N -0.52 -10.18 4.61 -237.74 -1.10 -11.28 16 13 C 0.04 0.67 9.05 60.06 0.54 1.22 16 14 C 0.18 4.07 1.65 -68.87 -0.11 3.96 16 15 H 0.00 0.02 7.20 -51.93 -0.37 -0.36 16 16 C -0.15 -3.01 8.47 37.15 0.31 -2.70 16 17 C -0.51 -13.53 8.53 -34.44 -0.29 -13.83 16 18 H 0.08 2.45 6.64 -52.49 -0.35 2.10 16 19 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 20 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 21 Si 0.88 21.13 24.37 -169.99 -4.14 16.98 16 22 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 23 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.08 0.97 8.14 -51.94 -0.42 0.55 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 34 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.05 0.83 8.11 -51.93 -0.42 0.40 16 37 H 0.08 1.32 5.54 -51.93 -0.29 1.03 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.73 6.29 -51.93 -0.33 1.41 16 40 H 0.05 0.92 6.30 -51.93 -0.33 0.59 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.95 3.28 -51.93 -0.17 0.78 16 43 H 0.03 0.50 6.19 -51.93 -0.32 0.18 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -30.94 347.46 -6.23 -37.17 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.22 Total: 1.12 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.42 Total: -8.25 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.14 Total: -47.21 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.38 Total: -5.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.94 -6.23 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282798478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.362 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds