Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 H 1.09005 * 109.46874 * 185.17601 * 3 2 1 5 5 C 1.50699 * 109.47239 * 305.17416 * 3 2 1 6 6 H 1.08005 * 119.99859 * 119.99808 * 5 3 2 7 7 C 1.37873 * 120.00136 * 300.00936 * 5 3 2 8 8 N 1.31518 * 120.00153 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00143 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47325 * 90.00555 * 9 7 5 11 11 H 1.48499 * 109.47487 * 210.00578 * 9 7 5 12 12 H 1.48508 * 109.47067 * 330.00401 * 9 7 5 13 13 N 1.46893 * 109.47379 * 65.17986 * 3 2 1 14 14 C 1.46901 * 111.00603 * 85.88640 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.85325 * 14 13 3 16 16 C 1.35317 * 126.12445 * 94.69244 * 15 14 13 17 17 C 1.39872 * 107.91805 * 179.90758 * 16 15 14 18 18 N 1.30834 * 108.20100 * 0.36120 * 17 16 15 19 19 N 1.34946 * 126.12970 * 275.00135 * 15 14 13 20 20 C 1.46499 * 126.03592 * 359.97438 * 19 15 14 21 21 C 1.53000 * 109.47672 * 89.99664 * 20 19 15 22 22 C 1.53002 * 109.47429 * 180.02562 * 21 20 19 23 23 O 1.42897 * 109.46694 * 180.02562 * 22 21 20 24 24 C 1.42905 * 113.99569 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.46830 * 294.85707 * 1 2 3 26 26 H 1.09000 * 109.47107 * 174.85556 * 1 2 3 27 27 H 1.08999 * 109.46948 * 54.85781 * 1 2 3 28 28 H 1.09004 * 109.46903 * 119.99872 * 2 1 3 29 29 H 1.08998 * 109.46779 * 239.99770 * 2 1 3 30 30 H 0.96995 * 120.00023 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00175 * 321.93635 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.86077 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.85448 * 14 13 3 34 34 H 1.07997 * 126.04078 * 0.03042 * 16 15 14 35 35 H 1.07997 * 125.89826 * 180.14360 * 17 16 15 36 36 H 1.08999 * 109.47168 * 210.00054 * 20 19 15 37 37 H 1.09005 * 109.47109 * 329.99302 * 20 19 15 38 38 H 1.09007 * 109.46798 * 300.00382 * 21 20 19 39 39 H 1.08998 * 109.46943 * 60.00005 * 21 20 19 40 40 H 1.09000 * 109.46524 * 299.99921 * 22 21 20 41 41 H 1.08998 * 109.47148 * 60.00015 * 22 21 20 42 42 H 1.09001 * 109.47460 * 59.99616 * 24 23 22 43 43 H 1.09002 * 109.47225 * 180.02562 * 24 23 22 44 44 H 1.09008 * 109.46697 * 299.99385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1890 -1.1614 6 1 0.8266 3.0629 -0.9834 7 6 1.6604 1.7561 -2.4510 8 7 1.1327 2.4073 -3.4645 9 14 2.7143 0.2449 -2.7588 10 1 1.8538 -0.9654 -2.7672 11 1 3.3968 0.3761 -4.0711 12 1 3.7304 0.1224 -1.6826 13 7 1.6551 2.0980 1.2570 14 6 2.6438 1.8363 2.3115 15 6 2.2837 2.6243 3.5446 16 6 1.5623 2.1735 4.5969 17 6 1.4588 3.2145 5.5253 18 7 2.0885 4.2554 5.0439 19 7 2.6178 3.9076 3.7945 20 6 3.3963 4.7825 2.9144 21 6 2.4510 5.5281 1.9702 22 6 3.2642 6.4413 1.0506 23 8 2.3811 7.1380 0.1693 24 6 3.0431 8.0225 -0.7371 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 -1.0235 -0.0921 27 1 -0.3633 0.5915 -0.8403 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.2910 2.1030 -4.3718 31 1 0.7325 1.8104 1.5470 32 1 2.6490 0.7725 2.5487 33 1 3.6328 2.1361 1.9648 34 1 1.1425 1.1840 4.7024 35 1 0.9445 3.1683 6.4738 36 1 3.9512 5.5024 3.5161 37 1 4.0944 4.1825 2.3305 38 1 1.8961 4.8081 1.3685 39 1 1.7530 6.1281 2.5541 40 1 3.8192 7.1612 1.6521 41 1 3.9618 5.8410 0.4668 42 1 3.7357 7.4546 -1.3584 43 1 2.3043 8.5130 -1.3710 44 1 3.5943 8.7750 -0.1731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282807368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = 31.882962 kcal Electronic energy + Delta-G solvation = -22932.172176 eV Core-core repulsion = 19693.606177 eV Total energy + Delta-G solvation = -3238.565999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01652 -37.76099 -36.94391 -34.57296 -33.03558 -31.60370 -30.56532 -29.49696 -26.96095 -26.81945 -24.95521 -24.34299 -23.22616 -21.82969 -20.83005 -19.65499 -19.33659 -17.05079 -16.26548 -16.01732 -15.91933 -15.29559 -15.09860 -14.76355 -14.44274 -14.22791 -13.75392 -13.54146 -13.37283 -13.12234 -12.90775 -12.57506 -12.39125 -12.08201 -12.05607 -11.72369 -11.53478 -11.07208 -10.90597 -10.83465 -10.74338 -10.57156 -10.50793 -10.35563 -9.92518 -9.46804 -9.45155 -9.18742 -9.05119 -8.56247 -8.31217 -7.53646 -6.05689 -4.02040 2.08286 2.69951 3.04891 3.23188 3.30999 3.35249 3.96893 4.37836 4.70269 4.81234 5.11960 5.18358 5.22081 5.24127 5.30300 5.34176 5.40799 5.46128 5.50728 5.59345 5.62625 5.83430 5.84144 5.86569 5.90412 5.93338 5.98342 6.14181 6.24966 6.38675 6.50880 6.58869 6.72345 6.76922 6.87813 6.93089 7.23557 7.26391 7.37576 7.65591 7.81832 7.95460 8.20762 8.65757 9.07407 9.56359 11.07432 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.006727 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.429856 B = 4161.589191 C = 6125.732478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.188 3.812 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.083 0.917 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.664 5.664 14 C 0.112 3.888 15 C 0.110 3.890 16 C -0.282 4.282 17 C 0.042 3.958 18 N -0.305 5.305 19 N -0.354 5.354 20 C 0.143 3.857 21 C -0.140 4.140 22 C 0.071 3.929 23 O -0.383 6.383 24 C 0.034 3.966 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.262 0.738 31 H 0.338 0.662 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 2.638 11.872 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.079 3.921 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.296 5.296 14 C -0.019 4.019 15 C -0.019 4.019 16 C -0.312 4.312 17 C -0.143 4.143 18 N -0.126 5.126 19 N -0.136 5.136 20 C 0.022 3.978 21 C -0.178 4.178 22 C -0.006 4.006 23 O -0.302 6.302 24 C -0.063 4.063 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.195 0.805 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.623 4.550 11.613 13.681 hybrid contribution 0.413 -2.681 -0.286 2.727 sum 6.036 1.869 11.327 12.970 Atomic orbital electron populations 1.21650 0.95658 0.99664 1.02566 1.22508 0.97411 1.00925 0.98981 1.19727 0.95934 0.88327 0.88129 0.94974 1.20853 1.31260 1.12743 0.87885 0.89859 1.24874 0.95519 0.96450 0.96195 1.69881 1.44837 1.40125 0.98798 0.87017 0.81162 0.84095 0.76822 1.20655 1.22521 1.19630 1.60663 1.03984 1.62784 1.02190 1.20552 0.97821 0.95620 0.87907 1.21171 0.97799 0.85883 0.97045 1.21197 1.11398 1.02081 0.96498 1.23700 0.99398 0.91104 1.00114 1.77284 1.17018 1.23447 0.94890 1.48470 1.41916 1.08821 1.14423 1.21440 0.92642 0.93077 0.90663 1.21913 0.98873 0.99600 0.97426 1.22297 0.92524 0.94084 0.91713 1.87931 1.33616 1.58841 1.49793 1.22714 0.98236 0.92624 0.92708 0.93988 0.95081 0.89995 0.94831 0.93277 0.92745 0.84237 0.93444 0.90492 0.84079 0.80530 0.89513 0.88869 0.87312 0.91060 0.94031 0.92801 0.93830 0.89687 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.40 37.16 0.35 -2.31 16 2 C -0.16 -3.21 5.22 -26.73 -0.14 -3.35 16 3 C 0.19 4.06 1.93 -68.87 -0.13 3.93 16 4 H 0.03 0.73 6.76 -51.93 -0.35 0.37 16 5 C -0.49 -12.87 7.83 -34.44 -0.27 -13.14 16 6 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.86 16 8 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.88 21.08 24.32 -169.99 -4.13 16.95 16 10 H -0.28 -6.61 6.92 56.52 0.39 -6.22 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.66 -12.42 6.08 -109.22 -0.66 -13.08 16 14 C 0.11 1.76 5.68 -4.98 -0.03 1.73 16 15 C 0.11 1.69 6.49 -82.27 -0.53 1.15 16 16 C -0.28 -3.99 10.72 -40.01 -0.43 -4.42 16 17 C 0.04 0.58 12.03 -17.37 -0.21 0.37 16 18 N -0.31 -4.84 12.57 30.62 0.39 -4.45 16 19 N -0.35 -5.46 3.61 -57.14 -0.21 -5.67 16 20 C 0.14 1.92 6.24 -4.04 -0.03 1.90 16 21 C -0.14 -2.13 5.91 -26.73 -0.16 -2.28 16 22 C 0.07 1.00 5.94 37.16 0.22 1.22 16 23 O -0.38 -6.38 10.70 -35.23 -0.38 -6.76 16 24 C 0.03 0.43 11.01 101.05 1.11 1.54 16 25 H 0.04 0.72 6.63 -51.93 -0.34 0.38 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.83 6.85 -51.93 -0.36 1.47 16 28 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 29 H 0.05 1.07 3.42 -51.93 -0.18 0.89 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.34 6.26 6.69 -39.29 -0.26 5.99 16 32 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 33 H 0.08 1.18 7.03 -51.93 -0.36 0.81 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.16 7.15 -51.93 -0.37 0.78 16 38 H 0.11 2.04 8.03 -51.93 -0.42 1.62 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -30.71 350.84 -6.53 -37.24 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.25 Total: 8.11 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.34 Total: -11.80 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.29 Total: -49.03 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.38 Total: -6.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.13 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.71 -6.53 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282807368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.124 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds