Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 H 1.09005 * 109.46874 * 185.17601 * 3 2 1 5 5 C 1.50699 * 109.47239 * 305.17416 * 3 2 1 6 6 H 1.08005 * 119.99859 * 119.99808 * 5 3 2 7 7 C 1.37873 * 120.00136 * 300.00936 * 5 3 2 8 8 N 1.31518 * 120.00153 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00143 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47325 * 90.00555 * 9 7 5 11 11 H 1.48499 * 109.47487 * 210.00578 * 9 7 5 12 12 H 1.48508 * 109.47067 * 330.00401 * 9 7 5 13 13 N 1.46893 * 109.47379 * 65.17986 * 3 2 1 14 14 C 1.46901 * 111.00603 * 85.88640 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.85325 * 14 13 3 16 16 C 1.35317 * 126.12445 * 94.69244 * 15 14 13 17 17 C 1.39872 * 107.91805 * 179.90758 * 16 15 14 18 18 N 1.30834 * 108.20100 * 0.36120 * 17 16 15 19 19 N 1.34946 * 126.12970 * 275.00135 * 15 14 13 20 20 C 1.46499 * 126.03592 * 359.97438 * 19 15 14 21 21 C 1.53000 * 109.47672 * 89.99664 * 20 19 15 22 22 C 1.53002 * 109.47429 * 180.02562 * 21 20 19 23 23 O 1.42897 * 109.46694 * 180.02562 * 22 21 20 24 24 C 1.42905 * 113.99569 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.46830 * 294.85707 * 1 2 3 26 26 H 1.09000 * 109.47107 * 174.85556 * 1 2 3 27 27 H 1.08999 * 109.46948 * 54.85781 * 1 2 3 28 28 H 1.09004 * 109.46903 * 119.99872 * 2 1 3 29 29 H 1.08998 * 109.46779 * 239.99770 * 2 1 3 30 30 H 0.96995 * 120.00023 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00175 * 321.93635 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.86077 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.85448 * 14 13 3 34 34 H 1.07997 * 126.04078 * 0.03042 * 16 15 14 35 35 H 1.07997 * 125.89826 * 180.14360 * 17 16 15 36 36 H 1.08999 * 109.47168 * 210.00054 * 20 19 15 37 37 H 1.09005 * 109.47109 * 329.99302 * 20 19 15 38 38 H 1.09007 * 109.46798 * 300.00382 * 21 20 19 39 39 H 1.08998 * 109.46943 * 60.00005 * 21 20 19 40 40 H 1.09000 * 109.46524 * 299.99921 * 22 21 20 41 41 H 1.08998 * 109.47148 * 60.00015 * 22 21 20 42 42 H 1.09001 * 109.47460 * 59.99616 * 24 23 22 43 43 H 1.09002 * 109.47225 * 180.02562 * 24 23 22 44 44 H 1.09008 * 109.46697 * 299.99385 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1890 -1.1614 6 1 0.8266 3.0629 -0.9834 7 6 1.6604 1.7561 -2.4510 8 7 1.1327 2.4073 -3.4645 9 14 2.7143 0.2449 -2.7588 10 1 1.8538 -0.9654 -2.7672 11 1 3.3968 0.3761 -4.0711 12 1 3.7304 0.1224 -1.6826 13 7 1.6551 2.0980 1.2570 14 6 2.6438 1.8363 2.3115 15 6 2.2837 2.6243 3.5446 16 6 1.5623 2.1735 4.5969 17 6 1.4588 3.2145 5.5253 18 7 2.0885 4.2554 5.0439 19 7 2.6178 3.9076 3.7945 20 6 3.3963 4.7825 2.9144 21 6 2.4510 5.5281 1.9702 22 6 3.2642 6.4413 1.0506 23 8 2.3811 7.1380 0.1693 24 6 3.0431 8.0225 -0.7371 25 1 -0.3633 0.4320 0.9325 26 1 -0.3633 -1.0235 -0.0921 27 1 -0.3633 0.5915 -0.8403 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.2910 2.1030 -4.3718 31 1 0.7325 1.8104 1.5470 32 1 2.6490 0.7725 2.5487 33 1 3.6328 2.1361 1.9648 34 1 1.1425 1.1840 4.7024 35 1 0.9445 3.1683 6.4738 36 1 3.9512 5.5024 3.5161 37 1 4.0944 4.1825 2.3305 38 1 1.8961 4.8081 1.3685 39 1 1.7530 6.1281 2.5541 40 1 3.8192 7.1612 1.6521 41 1 3.9618 5.8410 0.4668 42 1 3.7357 7.4546 -1.3584 43 1 2.3043 8.5130 -1.3710 44 1 3.5943 8.7750 -0.1731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282807368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = 9.716816 kcal Electronic energy + Delta-G solvation = -22933.133372 eV Core-core repulsion = 19693.606177 eV Total energy + Delta-G solvation = -3239.527195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12759 -38.93507 -38.54881 -35.71455 -34.71776 -33.37818 -31.73352 -30.80150 -28.71468 -27.88524 -26.11418 -25.72275 -24.95786 -22.99692 -21.93244 -21.37115 -20.51363 -18.62491 -17.81964 -17.19407 -17.12994 -16.91654 -16.50565 -15.99770 -15.71580 -15.42736 -15.19348 -14.95684 -14.78600 -14.58178 -14.24244 -14.10377 -14.01138 -13.20350 -13.09867 -13.08231 -12.78890 -12.67018 -12.51474 -12.34342 -12.17697 -12.02431 -11.92066 -11.65233 -11.51769 -11.23751 -11.09333 -10.64892 -10.60664 -10.21621 -9.43862 -9.01750 -8.18978 -6.18567 0.93565 1.33027 1.36547 1.45954 1.63160 1.97988 2.36626 2.87806 3.15891 3.52075 3.66459 3.84591 4.07680 4.09111 4.17084 4.19873 4.34086 4.35312 4.36249 4.40587 4.47031 4.49541 4.53106 4.56066 4.66106 4.82791 4.83637 4.85851 4.93990 5.06656 5.07578 5.19230 5.28554 5.29378 5.33005 5.61701 5.76227 5.84829 6.02258 6.14857 6.28457 6.68881 6.71736 6.86504 6.88207 7.44078 8.98482 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.006727 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.429856 B = 4161.589191 C = 6125.732478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C 0.195 3.805 4 H 0.032 0.968 5 C -0.479 4.479 6 H 0.032 0.968 7 C 0.014 3.986 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.306 1.306 12 H -0.246 1.246 13 N -0.674 5.674 14 C 0.118 3.882 15 C 0.093 3.907 16 C -0.280 4.280 17 C 0.043 3.957 18 N -0.332 5.332 19 N -0.364 5.364 20 C 0.145 3.855 21 C -0.128 4.128 22 C 0.071 3.929 23 O -0.423 6.423 24 C 0.028 3.972 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.339 0.661 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.211 0.789 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 1.009 14.217 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.086 3.914 4 H 0.050 0.950 5 C -0.517 4.517 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.594 5.594 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.234 1.234 12 H -0.170 1.170 13 N -0.306 5.306 14 C -0.012 4.012 15 C -0.036 4.036 16 C -0.310 4.310 17 C -0.142 4.142 18 N -0.153 5.153 19 N -0.146 5.146 20 C 0.024 3.976 21 C -0.167 4.167 22 C -0.006 4.006 23 O -0.343 6.343 24 C -0.068 4.068 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.227 0.773 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.081 2.916 13.995 15.954 hybrid contribution -0.126 -2.064 -0.928 2.267 sum 6.955 0.852 13.067 14.827 Atomic orbital electron populations 1.21571 0.95328 1.00472 1.01743 1.22438 0.97736 0.99368 1.00070 1.19458 0.95223 0.89069 0.87690 0.95036 1.21034 1.29653 1.11148 0.89912 0.95006 1.25648 0.97051 0.99631 0.95906 1.70057 1.47434 1.42587 0.99285 0.86001 0.79958 0.80396 0.76836 1.19665 1.23384 1.16959 1.60448 1.04818 1.63041 1.02323 1.20532 0.96804 0.96884 0.87013 1.21253 0.98807 0.86162 0.97350 1.21538 1.10473 1.03077 0.95952 1.24303 0.98489 0.90264 1.01113 1.77255 1.18014 1.24656 0.95397 1.48630 1.42339 1.09076 1.14604 1.21516 0.92127 0.93460 0.90547 1.21746 0.98981 0.98724 0.97204 1.22388 0.92034 0.94575 0.91603 1.87876 1.35701 1.59847 1.50867 1.22893 0.98490 0.92723 0.92689 0.92239 0.92764 0.94090 0.91158 0.94480 0.92984 0.84161 0.91377 0.90258 0.82011 0.77266 0.87307 0.87910 0.91497 0.92422 0.90759 0.92861 0.93985 0.89289 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.40 71.98 0.68 -4.24 16 2 C -0.16 -5.89 5.22 30.60 0.16 -5.73 16 3 C 0.20 8.25 1.93 44.17 0.09 8.33 16 4 H 0.03 1.36 6.76 -2.38 -0.02 1.34 16 5 C -0.48 -26.02 7.83 25.60 0.20 -25.82 16 6 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 7 C 0.01 0.79 5.42 84.65 0.46 1.25 16 8 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 9 Si 0.94 43.39 24.32 68.60 1.67 45.06 16 10 H -0.27 -12.00 6.92 99.48 0.69 -11.31 16 11 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.25 -10.24 6.53 99.48 0.65 -9.59 16 13 N -0.67 -24.65 6.08 -499.48 -3.04 -27.69 16 14 C 0.12 3.42 5.68 85.56 0.49 3.91 16 15 C 0.09 2.66 6.49 41.40 0.27 2.93 16 16 C -0.28 -7.14 10.72 21.99 0.24 -6.90 16 17 C 0.04 1.08 12.03 85.24 1.03 2.10 16 18 N -0.33 -9.94 12.57 -57.03 -0.72 -10.65 16 19 N -0.36 -10.73 3.61 -334.70 -1.21 -11.94 16 20 C 0.14 3.73 6.24 86.38 0.54 4.27 16 21 C -0.13 -3.96 5.91 30.59 0.18 -3.78 16 22 C 0.07 1.99 5.94 71.98 0.43 2.41 16 23 O -0.42 -14.45 10.70 -148.98 -1.59 -16.05 16 24 C 0.03 0.71 11.01 113.37 1.25 1.96 16 25 H 0.06 1.94 6.63 -2.39 -0.02 1.92 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.83 6.85 -2.39 -0.02 1.81 16 28 H 0.07 2.16 7.50 -2.39 -0.02 2.14 16 29 H 0.04 1.49 3.42 -2.39 -0.01 1.48 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.34 12.19 6.69 -89.69 -0.60 11.59 16 32 H 0.07 1.72 7.53 -2.39 -0.02 1.70 16 33 H 0.08 2.25 7.03 -2.38 -0.02 2.23 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 37 H 0.10 2.42 7.15 -2.38 -0.02 2.40 16 38 H 0.07 2.64 8.03 -2.38 -0.02 2.62 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -69.72 350.84 1.71 -68.01 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.30 Total: 31.21 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 5.99 Total: -19.31 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.66 Total: -108.93 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.59 Total: -16.05 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.67 Total: 45.06 kcal Total: -69.72 1.71 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282807368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.730 kcal (2) G-P(sol) polarization free energy of solvation -69.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds