Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46893 * 109.47223 * 2 1 4 4 C 1.46899 * 111.00254 * 302.09813 * 3 2 1 5 5 C 1.50703 * 109.46999 * 293.93184 * 4 3 2 6 6 H 1.08000 * 120.00437 * 4.20544 * 5 4 3 7 7 C 1.37881 * 119.99872 * 184.20364 * 5 4 3 8 8 N 1.31510 * 119.99866 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99882 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47182 * 90.00399 * 9 7 5 11 11 H 1.48503 * 109.47035 * 209.99875 * 9 7 5 12 12 H 1.48499 * 109.47286 * 329.99931 * 9 7 5 13 13 C 1.46902 * 110.99883 * 66.05191 * 3 2 1 14 14 C 1.50699 * 109.46975 * 68.11204 * 13 3 2 15 15 C 1.35324 * 126.12383 * 265.71676 * 14 13 3 16 16 C 1.39865 * 107.91748 * 180.02562 * 15 14 13 17 17 N 1.30840 * 108.20483 * 359.73644 * 16 15 14 18 18 N 1.34950 * 126.13115 * 85.74009 * 14 13 3 19 19 C 1.46501 * 126.03627 * 359.95607 * 18 14 13 20 20 C 1.52993 * 109.47169 * 95.12629 * 19 18 14 21 21 C 1.53001 * 109.47174 * 175.14450 * 20 19 18 22 22 O 1.42905 * 109.46897 * 180.02562 * 21 20 19 23 23 C 1.42900 * 113.99762 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47586 * 64.94592 * 1 2 3 25 25 H 1.08995 * 109.47600 * 184.95340 * 1 2 3 26 26 H 1.09004 * 109.46767 * 304.94809 * 1 2 3 27 27 H 1.09009 * 109.46372 * 240.00481 * 2 1 3 28 28 H 1.08999 * 109.47386 * 120.00437 * 2 1 3 29 29 H 1.08999 * 109.47276 * 53.93354 * 4 3 2 30 30 H 1.09008 * 109.47249 * 173.93758 * 4 3 2 31 31 H 0.97000 * 120.00193 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47069 * 308.11048 * 13 3 2 33 33 H 1.08997 * 109.46789 * 188.10676 * 13 3 2 34 34 H 1.07997 * 126.03964 * 0.02562 * 15 14 13 35 35 H 1.08003 * 125.89556 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.47014 * 335.12771 * 19 18 14 37 37 H 1.09000 * 109.47103 * 215.13003 * 19 18 14 38 38 H 1.08996 * 109.47250 * 55.14065 * 20 19 18 39 39 H 1.09003 * 109.47033 * 295.14909 * 20 19 18 40 40 H 1.08997 * 109.46838 * 300.00155 * 21 20 19 41 41 H 1.09000 * 109.46931 * 60.00282 * 21 20 19 42 42 H 1.09006 * 109.46615 * 299.99507 * 23 22 21 43 43 H 1.08996 * 109.47714 * 59.99599 * 23 22 21 44 44 H 1.09004 * 109.47090 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5081 2.1242 -1.1618 5 6 2.0876 1.5396 -2.4241 6 1 2.7136 0.6609 -2.3746 7 6 1.8185 2.1265 -3.6424 8 7 2.3238 1.6160 -4.7441 9 14 0.7364 3.6466 -3.7282 10 1 1.5806 4.8625 -3.6090 11 1 0.0166 3.6692 -5.0269 12 1 -0.2482 3.6167 -2.6169 13 6 1.6703 2.0668 1.2534 14 6 2.4493 1.4578 2.3906 15 6 2.0226 0.4698 3.2110 16 6 3.0447 0.1993 4.1266 17 7 4.0511 0.9924 3.8618 18 7 3.6972 1.8002 2.7735 19 6 4.5360 2.8304 2.1561 20 6 4.3772 4.1446 2.9232 21 6 5.3425 5.1868 2.3547 22 8 5.1945 6.4141 3.0716 23 6 6.0552 7.4602 2.6169 24 1 -0.3634 0.4352 -0.9309 25 1 -0.3634 -1.0237 0.0887 26 1 -0.3633 0.5887 0.8424 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.4212 2.0476 -1.1914 30 1 1.7964 3.1724 -1.0812 31 1 2.1343 2.0286 -5.6012 32 1 0.6028 1.9543 1.4429 33 1 1.9151 3.1257 1.1713 34 1 1.0625 -0.0228 3.1665 35 1 3.0109 -0.5400 4.9132 36 1 4.2301 2.9752 1.1200 37 1 5.5792 2.5158 2.1863 38 1 4.6004 3.9794 3.9772 39 1 3.3531 4.5037 2.8207 40 1 6.3664 4.8276 2.4573 41 1 5.1192 5.3521 1.3007 42 1 7.0942 7.1483 2.7242 43 1 5.8462 7.6729 1.5685 44 1 5.8824 8.3573 3.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282842503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = 34.925747 kcal Electronic energy + Delta-G solvation = -22619.645981 eV Core-core repulsion = 19381.211928 eV Total energy + Delta-G solvation = -3238.434054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05940 -38.15667 -37.38361 -34.74809 -32.67587 -31.33019 -30.42529 -29.63047 -27.53345 -27.11261 -25.16979 -24.77835 -22.87287 -22.08777 -20.81581 -19.96664 -18.96384 -16.92698 -16.68226 -16.38458 -16.06813 -15.49427 -15.25637 -14.92541 -14.52996 -14.32477 -14.17109 -13.78090 -13.30659 -13.26900 -12.78185 -12.43854 -12.27724 -12.24374 -11.97931 -11.88571 -11.62796 -11.45100 -11.26059 -11.10201 -11.06749 -10.68560 -10.54392 -10.38083 -10.02955 -9.95593 -9.86653 -9.34326 -9.05062 -8.62395 -8.28255 -7.44968 -6.10466 -4.08007 2.09947 2.65255 3.06620 3.22393 3.31182 3.31767 3.61670 4.35947 4.63857 4.73303 4.85977 4.94221 4.99270 5.02555 5.13597 5.19481 5.22396 5.28032 5.34539 5.40950 5.45583 5.50579 5.68988 5.78893 5.80521 5.87858 5.92778 5.99511 6.05960 6.08047 6.31297 6.43943 6.48233 6.76897 6.88448 6.88792 6.93902 7.00582 7.25603 7.50010 7.80444 7.92029 7.99018 8.58386 8.98320 9.50665 11.02588 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.005720 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.638483 B = 4893.959723 C = 6888.256235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 N -0.520 5.520 4 C 0.159 3.841 5 C -0.507 4.507 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.100 3.900 14 C 0.118 3.882 15 C -0.279 4.279 16 C 0.043 3.957 17 N -0.306 5.306 18 N -0.356 5.356 19 C 0.135 3.865 20 C -0.133 4.133 21 C 0.064 3.936 22 O -0.393 6.393 23 C 0.032 3.968 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.062 0.938 29 H -0.002 1.002 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.177 0.823 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 4.873 15.277 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.244 5.244 4 C 0.033 3.967 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.029 4.029 14 C -0.011 4.011 15 C -0.309 4.309 16 C -0.143 4.143 17 N -0.127 5.127 18 N -0.138 5.138 19 C 0.013 3.987 20 C -0.172 4.172 21 C -0.013 4.013 22 O -0.312 6.312 23 C -0.065 4.065 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.015 0.985 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.194 0.806 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.798 5.365 15.441 16.782 hybrid contribution -2.051 0.598 -0.621 2.225 sum 1.747 5.963 14.820 16.070 Atomic orbital electron populations 1.22362 0.99188 1.01110 1.01909 1.22041 0.92233 0.90444 1.02299 1.62225 1.59456 1.02428 1.00288 1.20252 0.93935 0.93551 0.88925 1.20972 1.30949 1.14210 0.88380 0.90171 1.24876 0.95647 0.97006 0.95650 1.69884 1.44945 1.40846 0.98111 0.86916 0.81370 0.84081 0.77701 1.20210 1.21188 1.19263 1.20754 0.96310 0.97822 0.88048 1.21082 0.86425 0.96900 0.96653 1.21174 1.02901 1.05096 1.01769 1.23700 0.91632 0.99037 0.99881 1.77277 1.23531 1.07805 1.04081 1.48402 1.11607 1.28967 1.24779 1.21545 0.95654 0.84335 0.97163 1.21866 1.00755 0.93168 1.01387 1.22409 0.98732 0.84448 0.95734 1.87857 1.62505 1.21193 1.59620 1.22748 0.93494 0.90601 0.99654 0.91490 0.93040 0.93647 0.89686 0.91995 0.98469 0.96079 0.92631 0.92381 0.90414 0.84091 0.80554 0.87295 0.88967 0.90349 0.90592 0.92857 0.92416 0.94037 0.93803 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.06 1.07 5.69 -3.83 -0.02 1.04 16 3 N -0.52 -10.13 4.68 -237.52 -1.11 -11.24 16 4 C 0.16 3.59 3.50 -4.97 -0.02 3.57 16 5 C -0.51 -13.69 9.18 -34.44 -0.32 -14.01 16 6 H 0.08 2.39 7.19 -52.49 -0.38 2.01 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.87 20.69 27.39 -169.99 -4.66 16.03 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.09 6.66 56.52 0.38 -5.71 16 13 C 0.10 1.63 4.73 -4.98 -0.02 1.60 16 14 C 0.12 1.85 5.77 -82.26 -0.47 1.38 16 15 C -0.28 -4.03 9.53 -40.01 -0.38 -4.41 16 16 C 0.04 0.60 12.03 -17.37 -0.21 0.39 16 17 N -0.31 -4.86 12.58 30.62 0.39 -4.47 16 18 N -0.36 -5.52 3.61 -57.14 -0.21 -5.73 16 19 C 0.13 1.79 6.19 -4.04 -0.03 1.76 16 20 C -0.13 -1.59 5.91 -26.73 -0.16 -1.75 16 21 C 0.06 0.70 5.94 37.16 0.22 0.92 16 22 O -0.39 -4.73 10.70 -35.23 -0.38 -5.11 16 23 C 0.03 0.28 11.01 101.05 1.11 1.39 16 24 H 0.07 1.26 6.52 -51.93 -0.34 0.92 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.68 6.20 -51.93 -0.32 0.36 16 27 H 0.08 1.78 6.84 -51.92 -0.36 1.42 16 28 H 0.06 1.06 6.28 -51.93 -0.33 0.74 16 29 H 0.00 -0.05 5.40 -51.93 -0.28 -0.33 16 30 H 0.02 0.47 7.10 -51.92 -0.37 0.11 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.06 0.89 6.06 -51.93 -0.31 0.58 16 33 H 0.08 1.21 7.56 -51.93 -0.39 0.81 16 34 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.18 1.82 8.06 -52.48 -0.42 1.39 16 36 H 0.11 1.53 7.52 -51.93 -0.39 1.14 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -31.17 352.29 -7.21 -38.38 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.28 Total: 1.85 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.05 Total: -9.02 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.16 Total: -47.45 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.38 Total: -5.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.66 Total: 16.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.17 -7.21 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282842503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.308 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds