Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00427 * 2 1 4 4 C 1.50700 * 119.99536 * 180.02562 * 2 1 3 5 5 N 1.46905 * 109.47367 * 94.99915 * 4 2 1 6 6 C 1.46840 * 110.99896 * 169.99811 * 5 4 2 7 7 C 1.53042 * 109.51926 * 185.83695 * 6 5 4 8 8 C 1.53116 * 109.28081 * 300.81809 * 7 6 5 9 9 N 1.46502 * 109.52419 * 177.55903 * 8 7 6 10 10 C 1.37333 * 120.00021 * 155.00312 * 9 8 7 11 11 O 1.35101 * 120.00193 * 0.02562 * 10 9 8 12 12 N 1.30104 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99974 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46992 * 114.99954 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.53121 * 109.15885 * 57.65635 * 8 7 6 23 23 C 1.46848 * 110.99521 * 294.20861 * 5 4 2 24 24 H 1.08002 * 120.00761 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99789 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47182 * 270.00493 * 3 2 1 27 27 H 1.08998 * 109.46619 * 29.99923 * 3 2 1 28 28 H 1.08997 * 109.47169 * 150.00096 * 3 2 1 29 29 H 1.08996 * 109.47177 * 334.99812 * 4 2 1 30 30 H 1.09002 * 109.46989 * 214.99944 * 4 2 1 31 31 H 1.09002 * 109.46322 * 65.82688 * 6 5 4 32 32 H 1.08995 * 109.45734 * 305.84921 * 6 5 4 33 33 H 1.09007 * 109.50071 * 180.87833 * 7 6 5 34 34 H 1.09001 * 109.50211 * 60.76596 * 7 6 5 35 35 H 1.08999 * 109.52675 * 297.68884 * 8 7 6 36 36 H 0.97002 * 119.99974 * 335.00538 * 9 8 7 37 37 H 0.96699 * 113.99262 * 0.02562 * 11 10 9 38 38 H 1.09002 * 109.47391 * 354.99944 * 13 12 10 39 39 H 1.09001 * 109.46813 * 235.00001 * 13 12 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.50275 * 62.28394 * 22 8 7 42 42 H 1.08996 * 109.50555 * 182.40222 * 22 8 7 43 43 H 1.09004 * 109.46268 * 294.17153 * 23 5 4 44 44 H 1.08996 * 109.46531 * 54.15576 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.4127 -1.6684 -1.3805 6 6 3.3457 -2.8020 -1.4061 7 6 3.7994 -3.0585 -2.8450 8 6 2.5759 -3.3605 -3.7147 9 7 2.9980 -3.5494 -5.1049 10 6 2.2326 -4.3058 -5.9581 11 8 1.0901 -4.8753 -5.5157 12 7 2.6077 -4.4741 -7.1925 13 6 1.7914 -5.2815 -8.1025 14 6 1.2465 -4.4046 -9.2004 15 1 1.4848 -3.3514 -9.2187 16 6 0.4447 -4.9472 -10.1821 17 7 -0.0304 -4.1820 -11.1404 18 14 0.0332 -6.7690 -10.1508 19 1 -1.2091 -6.9825 -9.3657 20 1 -0.1693 -7.2546 -11.5394 21 1 1.1508 -7.5182 -9.5223 22 6 1.5982 -2.1850 -3.6322 23 6 1.2082 -1.9538 -2.1704 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 2.2452 1.6198 -1.0277 27 1 1.4745 2.0647 0.5138 28 1 3.0160 1.1747 0.5138 29 1 1.4384 -2.0856 0.4334 30 1 2.9741 -1.1992 0.5889 31 1 2.8478 -3.6909 -1.0185 32 1 4.2130 -2.5725 -0.7872 33 1 4.4798 -3.9099 -2.8658 34 1 4.3095 -2.1749 -3.2287 35 1 2.0885 -4.2668 -3.3557 36 1 3.8181 -3.1403 -5.4226 37 1 0.8946 -4.6938 -4.5862 38 1 0.9646 -5.7278 -7.5499 39 1 2.4050 -6.0701 -8.5381 40 1 -0.5948 -4.5637 -11.8308 41 1 2.0736 -1.2876 -4.0282 42 1 0.7058 -2.4122 -4.2153 43 1 0.7205 -2.8467 -1.7792 44 1 0.5233 -1.1084 -2.1068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331168307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = 2.995618 kcal Electronic energy + Delta-G solvation = -22122.828269 eV Core-core repulsion = 18883.009621 eV Total energy + Delta-G solvation = -3239.818648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01832 -38.57552 -36.35300 -34.32696 -33.81604 -32.16703 -31.16871 -30.81736 -27.64444 -27.48626 -26.03586 -23.48636 -23.05829 -21.74010 -20.38286 -19.95355 -18.82498 -18.27347 -16.72906 -16.59757 -15.66369 -15.57914 -15.17130 -14.69516 -14.43081 -14.25705 -13.96012 -13.77437 -13.60975 -13.45856 -13.25988 -12.98081 -12.52803 -12.35067 -12.16930 -12.04735 -11.88533 -11.69147 -11.48502 -11.25035 -11.03138 -10.84685 -10.82126 -10.39460 -10.20004 -9.61111 -9.44743 -9.29679 -8.64599 -8.61019 -8.24108 -7.22982 -5.92594 -3.87917 1.82404 3.31478 3.38939 3.44567 3.50085 3.58040 3.65705 4.35120 4.43027 4.46791 4.53158 4.54615 4.64078 4.73666 4.92324 5.03384 5.07200 5.14840 5.24030 5.27719 5.32508 5.37124 5.40932 5.42563 5.54781 5.59354 5.65660 5.70680 5.77647 5.86569 6.12069 6.24430 6.25541 6.46379 6.64948 6.71655 6.77028 7.17090 7.33706 7.74020 7.85866 8.46064 8.63029 9.14185 9.28185 9.71161 11.21175 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.003072 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.702429 B = 9113.010555 C = 9478.346484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C -0.113 4.113 4 C 0.088 3.912 5 N -0.533 5.533 6 C 0.060 3.940 7 C -0.118 4.118 8 C 0.148 3.852 9 N -0.739 5.739 10 C 0.522 3.478 11 O -0.508 6.508 12 N -0.567 5.567 13 C 0.172 3.828 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.137 4.137 23 C 0.054 3.946 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.415 0.585 37 H 0.375 0.625 38 H 0.003 0.997 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.033 0.967 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 6.401 28.607 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.114 4.114 3 C -0.170 4.170 4 C -0.039 4.039 5 N -0.257 5.257 6 C -0.068 4.068 7 C -0.157 4.157 8 C 0.041 3.959 9 N -0.391 5.391 10 C 0.207 3.793 11 O -0.300 6.300 12 N -0.312 5.312 13 C 0.043 3.957 14 C -0.541 4.541 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.176 4.176 23 C -0.074 4.074 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.252 0.748 37 H 0.228 0.772 38 H 0.021 0.979 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.234 6.597 27.181 28.456 hybrid contribution -1.285 -1.584 0.974 2.260 sum 3.949 5.012 28.155 28.869 Atomic orbital electron populations 1.23747 0.95301 1.01948 1.02251 1.21632 0.95026 0.95666 0.99067 1.20785 0.99729 0.93965 1.02472 1.21153 0.99293 0.93830 0.89651 1.61909 1.14740 1.37894 1.11207 1.22042 0.96278 0.91617 0.96871 1.21785 0.97027 1.02900 0.93953 1.20867 0.95777 0.97162 0.82065 1.44289 1.28441 1.57828 1.08555 1.20826 0.80809 0.88708 0.88916 1.85349 1.40758 1.72275 1.31661 1.72496 1.33518 1.27452 0.97743 1.19757 0.91330 0.93287 0.91282 1.21110 1.28590 0.97126 1.07258 0.90733 1.24910 0.95671 0.97765 0.95230 1.69910 1.35059 1.35503 1.14084 0.86791 0.79192 0.86253 0.77109 1.20344 1.21258 1.19124 1.22219 0.99971 0.99946 0.95497 1.22163 0.91733 1.00316 0.93224 0.88692 0.88251 0.90995 0.92260 0.92013 0.94272 0.90141 0.94656 0.90193 0.90481 0.90003 0.91343 0.74796 0.77233 0.97871 0.95389 0.92822 0.90030 0.90856 0.94904 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 12.33 29.01 0.36 -1.00 16 2 C -0.11 -0.82 4.96 -101.07 -0.50 -1.32 16 3 C -0.11 -0.73 10.03 36.01 0.36 -0.37 16 4 C 0.09 0.61 5.14 -4.97 -0.03 0.58 16 5 N -0.53 -4.20 4.65 -236.11 -1.10 -5.29 16 6 C 0.06 0.42 5.46 -3.84 -0.02 0.40 16 7 C -0.12 -0.93 5.57 -26.65 -0.15 -1.08 16 8 C 0.15 1.47 2.23 -67.81 -0.15 1.32 16 9 N -0.74 -10.36 5.18 -55.89 -0.29 -10.65 16 10 C 0.52 10.24 8.76 -88.57 -0.78 9.47 16 11 O -0.51 -9.44 11.99 -17.01 -0.20 -9.64 16 12 N -0.57 -14.01 10.59 -63.70 -0.67 -14.68 16 13 C 0.17 4.80 5.15 -5.19 -0.03 4.77 16 14 C -0.50 -15.92 9.94 -34.44 -0.34 -16.26 16 15 H 0.07 2.58 8.06 -52.49 -0.42 2.16 16 16 C 0.06 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.91 -29.49 13.96 55.43 0.77 -28.71 16 18 Si 0.88 23.13 27.47 -169.99 -4.67 18.46 16 19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 22 C -0.14 -1.39 5.61 -26.65 -0.15 -1.54 16 23 C 0.05 0.46 5.20 -3.83 -0.02 0.44 16 24 H 0.09 0.64 7.99 -52.49 -0.42 0.22 16 25 H 0.10 0.64 8.04 -52.48 -0.42 0.22 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.04 0.27 7.97 -51.93 -0.41 -0.15 16 30 H 0.08 0.49 7.94 -51.93 -0.41 0.07 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.47 8.01 -51.93 -0.42 0.06 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 6.61 -51.93 -0.34 0.29 16 36 H 0.41 5.65 8.72 -40.82 -0.36 5.30 16 37 H 0.37 4.78 6.16 45.56 0.28 5.06 16 38 H 0.00 0.09 6.17 -51.93 -0.32 -0.23 16 39 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 40 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 43 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.75 6.06 -51.93 -0.31 0.43 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -36.33 350.59 -9.30 -45.64 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.89 Total: 2.27 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.54 Total: -2.67 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -1.29 Total: -59.34 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.20 Total: -9.64 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.67 Total: 18.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.33 -9.30 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331168307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.633 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds