Wall clock time and date at job start Tue Mar 31 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99886 * 2 1 4 4 H 1.48500 * 109.46878 * 240.00483 * 3 2 1 5 5 H 1.48495 * 109.46815 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47170 * 120.00064 * 3 2 1 7 7 C 1.37880 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46814 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46976 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00017 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00048 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99952 * 179.97438 * 14 12 11 16 16 C 1.53123 * 109.57501 * 85.29823 * 15 14 12 17 17 C 1.53034 * 109.27992 * 177.60191 * 16 15 14 18 18 N 1.46847 * 109.51345 * 300.80438 * 17 16 15 19 19 C 1.46895 * 110.99982 * 185.84805 * 18 17 16 20 20 C 1.53001 * 117.49790 * 248.62113 * 19 18 17 21 21 C 1.53006 * 60.00157 * 252.50752 * 20 19 18 22 22 C 1.46843 * 111.20124 * 61.74903 * 18 17 16 23 23 C 1.53042 * 109.52278 * 298.25596 * 22 18 17 24 24 H 0.96999 * 120.00683 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47091 * 60.00389 * 9 7 2 26 26 H 1.08999 * 109.47424 * 299.99879 * 9 7 2 27 27 H 1.09001 * 109.46851 * 60.00392 * 10 9 7 28 28 H 1.08999 * 109.47149 * 300.00198 * 10 9 7 29 29 H 0.96998 * 120.00046 * 0.02562 * 11 10 9 30 30 H 0.96998 * 119.99908 * 359.97438 * 14 12 11 31 31 H 1.09003 * 109.52476 * 325.12928 * 15 14 12 32 32 H 1.08997 * 109.51083 * 57.64785 * 16 15 14 33 33 H 1.08998 * 109.48980 * 297.53716 * 16 15 14 34 34 H 1.09002 * 109.46271 * 180.79158 * 17 16 15 35 35 H 1.08994 * 109.46242 * 60.81457 * 17 16 15 36 36 H 1.09002 * 115.55182 * 34.32677 * 19 18 17 37 37 H 1.08993 * 117.50121 * 359.97438 * 20 19 18 38 38 H 1.08996 * 117.49842 * 145.02062 * 20 19 18 39 39 H 1.08995 * 117.50070 * 252.51168 * 21 20 19 40 40 H 1.08994 * 117.49688 * 107.48335 * 21 20 19 41 41 H 1.08993 * 109.46313 * 58.27251 * 22 18 17 42 42 H 1.09000 * 109.46480 * 178.25361 * 22 18 17 43 43 H 1.08997 * 109.50758 * 179.11703 * 23 22 18 44 44 H 1.08998 * 109.50897 * 299.20258 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0016 13 8 3.4027 -6.0979 -0.0030 14 7 1.5130 -7.2652 -0.0016 15 6 2.2455 -8.5339 -0.0026 16 6 2.6055 -8.9196 1.4349 17 6 3.3175 -10.2742 1.4314 18 7 2.4371 -11.2895 0.8392 19 6 3.0320 -12.6284 0.9450 20 6 3.4884 -13.3029 -0.3503 21 6 2.2356 -13.8026 0.3722 22 6 2.1159 -10.9651 -0.5564 23 6 1.3682 -9.6308 -0.6123 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8727 -3.6047 0.8878 28 1 2.8714 -3.6039 -0.8922 29 1 0.5429 -4.9308 -0.0005 30 1 0.5430 -7.2652 -0.0009 31 1 3.1572 -8.4277 -0.5906 32 1 1.6963 -8.9877 2.0321 33 1 3.2649 -8.1630 1.8601 34 1 3.5626 -10.5583 2.4548 35 1 4.2336 -10.2015 0.8453 36 1 3.6223 -12.8110 1.8429 37 1 3.3468 -12.7534 -1.2809 38 1 4.3792 -13.9294 -0.3047 39 1 2.3023 -14.7577 0.8931 40 1 1.2703 -13.5815 -0.0830 41 1 3.0377 -10.8893 -1.1331 42 1 1.4881 -11.7508 -0.9767 43 1 1.1437 -9.3826 -1.6496 44 1 0.4392 -9.7103 -0.0478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331409988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:23 Heat of formation + Delta-G solvation = -11.877462 kcal Electronic energy + Delta-G solvation = -21734.286131 eV Core-core repulsion = 18493.822538 eV Total energy + Delta-G solvation = -3240.463593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25402 -39.24720 -36.76703 -34.77176 -33.87010 -32.79029 -31.22469 -30.55230 -29.05882 -25.10494 -24.11005 -23.34137 -22.75236 -21.30466 -20.84001 -20.44683 -19.83164 -17.86469 -17.14518 -16.38348 -16.06224 -15.63521 -15.14254 -14.64951 -14.51236 -14.40567 -14.19436 -13.96201 -13.66244 -13.24407 -13.02980 -12.63103 -12.35780 -12.25252 -11.96957 -11.83047 -11.32359 -11.17568 -11.09700 -11.04617 -10.94391 -10.82449 -10.63406 -10.51379 -10.28180 -9.89175 -9.52635 -9.25288 -8.95994 -8.46802 -8.45338 -8.21772 -6.07365 -4.09989 3.05752 3.27555 3.32718 3.36323 3.40148 3.62461 3.68430 4.39611 4.41525 4.47130 4.54419 4.60590 4.70709 4.77582 4.90762 5.03281 5.07608 5.25148 5.28662 5.29546 5.36212 5.41569 5.48350 5.54320 5.61619 5.74939 5.75180 5.83386 5.99292 6.16723 6.34107 6.42467 6.68513 6.73502 6.78427 6.80696 7.03893 7.29368 7.59311 7.65705 7.91823 8.28338 8.48174 8.94898 9.04383 9.54525 11.04243 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.061797 B = 0.002380 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.987915 B =11760.717491 C =11926.008587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.749 5.749 15 C 0.165 3.835 16 C -0.128 4.128 17 C 0.061 3.939 18 N -0.507 5.507 19 C 0.023 3.977 20 C -0.223 4.223 21 C -0.172 4.172 22 C 0.055 3.945 23 C -0.124 4.124 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.393 0.607 30 H 0.394 0.606 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 -26.672 0.408 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.478 6.478 14 N -0.404 5.404 15 C 0.059 3.941 16 C -0.167 4.167 17 C -0.067 4.067 18 N -0.229 5.229 19 C -0.086 4.086 20 C -0.262 4.262 21 C -0.210 4.210 22 C -0.073 4.073 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.226 0.774 30 H 0.227 0.773 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.053 -26.459 0.675 26.547 hybrid contribution 0.187 0.895 -0.449 1.019 sum 2.240 -25.564 0.226 25.663 Atomic orbital electron populations 1.69943 1.06078 1.26950 1.50392 1.25000 0.94903 0.99399 0.95035 0.86564 0.79501 0.82641 0.78777 1.20117 1.21276 1.20114 1.21018 0.93231 0.90387 1.51329 0.92282 1.19320 0.94253 0.91078 0.97781 1.21578 0.95621 0.80470 1.00575 1.45542 1.09833 1.05355 1.78522 1.16087 0.85679 0.80530 0.77870 1.90877 1.11785 1.86662 1.58488 1.45190 1.09323 1.04478 1.81439 1.20738 0.95463 0.81668 0.96210 1.22031 1.01558 0.95627 0.97526 1.22066 0.93823 0.91099 0.99728 1.61835 1.43061 1.00459 1.17547 1.22652 1.00870 0.88096 0.96978 1.23570 0.99078 1.05512 0.98049 1.23063 0.96078 0.97957 1.03892 1.22142 0.99233 0.97063 0.88838 1.21888 0.99438 0.93353 1.01585 0.92818 0.96003 0.95979 0.92842 0.92853 0.77417 0.77294 0.89845 0.90930 0.90485 0.90361 0.94299 0.86282 0.88282 0.88846 0.88507 0.88546 0.94012 0.90229 0.90675 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.25 5.56 -65.22 -0.36 -13.61 16 12 C 0.70 12.33 8.54 -86.92 -0.74 11.59 16 13 O -0.60 -12.94 16.00 5.29 0.08 -12.86 16 14 N -0.75 -9.58 5.09 -58.55 -0.30 -9.88 16 15 C 0.17 1.89 2.52 -67.80 -0.17 1.72 16 16 C -0.13 -1.42 5.68 -26.65 -0.15 -1.57 16 17 C 0.06 0.57 5.44 -3.84 -0.02 0.55 16 18 N -0.51 -4.42 4.88 -226.70 -1.11 -5.53 16 19 C 0.02 0.18 6.11 -67.71 -0.41 -0.24 16 20 C -0.22 -1.50 9.58 -26.73 -0.26 -1.76 16 21 C -0.17 -1.12 9.94 -26.72 -0.27 -1.39 16 22 C 0.06 0.45 4.12 -3.83 -0.02 0.44 16 23 C -0.12 -1.07 5.57 -26.64 -0.15 -1.22 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.05 8.49 -40.82 -0.35 5.70 16 30 H 0.39 3.98 8.62 -40.82 -0.35 3.63 16 31 H 0.08 1.15 7.57 -51.93 -0.39 0.75 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.12 0.81 8.04 -51.93 -0.42 0.39 16 37 H 0.10 0.69 5.97 -51.93 -0.31 0.38 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.65 7.23 -51.93 -0.38 0.27 16 41 H 0.04 0.36 7.12 -51.93 -0.37 -0.01 16 42 H 0.08 0.57 6.42 -51.93 -0.33 0.24 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -32.06 351.57 -10.94 -43.00 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.51 Total: 4.60 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.76 Total: -1.99 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -1.03 Total: -54.56 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.06 -10.94 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331409988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.123 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds