Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 110.72205 * 2 1 4 4 C 1.54941 * 110.66438 * 236.90953 * 2 1 3 5 5 C 1.54600 * 102.91869 * 204.14710 * 4 2 1 6 6 H 1.08998 * 110.30768 * 140.87518 * 5 4 2 7 7 N 1.46500 * 110.39213 * 263.00165 * 5 4 2 8 8 C 1.34781 * 119.99746 * 202.22408 * 7 5 4 9 9 O 1.21582 * 119.99840 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99879 * 179.97438 * 8 7 5 11 11 C 1.46508 * 120.00036 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.50694 * 109.47337 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99575 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00555 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99549 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00245 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47393 * 60.00171 * 17 15 13 19 19 H 1.48504 * 109.46947 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47149 * 299.99601 * 17 15 13 21 21 C 1.53997 * 105.13998 * 21.95915 * 5 4 2 22 22 N 1.47902 * 107.05992 * 1.22020 * 21 5 4 23 23 C 1.46890 * 111.00329 * 214.15762 * 22 21 5 24 24 C 1.53000 * 117.50145 * 128.49722 * 23 22 21 25 25 C 1.52997 * 60.00347 * 252.51152 * 24 23 22 26 26 H 1.09004 * 109.46760 * 296.89700 * 1 2 3 27 27 H 1.08997 * 109.47309 * 56.89767 * 1 2 3 28 28 H 1.08996 * 109.46753 * 176.90538 * 1 2 3 29 29 H 1.08996 * 110.72484 * 85.79343 * 4 2 1 30 30 H 1.08999 * 110.72619 * 322.50369 * 4 2 1 31 31 H 0.96996 * 120.00670 * 22.21291 * 7 5 4 32 32 H 0.96996 * 120.00537 * 359.97438 * 10 8 7 33 33 H 1.08995 * 109.47019 * 299.99748 * 11 10 8 34 34 H 1.09000 * 109.46996 * 59.99715 * 11 10 8 35 35 H 1.08999 * 109.47167 * 300.00559 * 12 11 10 36 36 H 1.09005 * 109.46812 * 59.99688 * 12 11 10 37 37 H 0.97001 * 120.00275 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.91309 * 241.87323 * 21 5 4 39 39 H 1.08996 * 110.08528 * 120.67185 * 21 5 4 40 40 H 1.09004 * 115.56595 * 274.18491 * 23 22 21 41 41 H 1.09002 * 117.49696 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.50343 * 145.02257 * 24 23 22 43 43 H 1.08999 * 117.49685 * 252.51237 * 25 24 23 44 44 H 1.08997 * 117.50044 * 107.48590 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0768 -0.7915 -1.2146 5 6 3.4853 -1.2196 -0.7425 6 1 3.7045 -2.2336 -1.0769 7 7 4.4977 -0.2886 -1.2470 8 6 5.7826 -0.6821 -1.3515 9 8 6.1014 -1.8094 -1.0266 10 7 6.7138 0.1742 -1.8162 11 6 8.1106 -0.2533 -1.9293 12 6 8.9537 0.8990 -2.4792 13 6 10.3902 0.4591 -2.5961 14 1 10.6736 -0.5422 -2.3067 15 6 11.3430 1.3350 -3.0716 16 7 10.9979 2.5543 -3.4235 17 14 13.1238 0.7898 -3.2158 18 1 13.2130 -0.3717 -4.1368 19 1 13.9421 1.9082 -3.7497 20 1 13.6321 0.3996 -1.8762 21 6 3.4280 -1.1647 0.7955 22 7 2.0544 -0.7589 1.1642 23 6 2.0581 0.0718 2.3757 24 6 1.3158 1.4084 2.3181 25 6 2.8455 1.3830 2.3308 26 1 -0.3633 0.4649 0.9165 27 1 -0.3634 0.5612 -0.8608 28 1 -0.3633 -1.0262 -0.0555 29 1 2.1430 -0.1512 -2.0941 30 1 1.4562 -1.6643 -1.4173 31 1 4.2434 0.6109 -1.5060 32 1 6.4594 1.0735 -2.0757 33 1 8.4836 -0.5398 -0.9460 34 1 8.1760 -1.1058 -2.6053 35 1 8.5805 1.1852 -3.4625 36 1 8.8882 1.7518 -1.8035 37 1 11.6682 3.1707 -3.7577 38 1 4.1441 -0.4322 1.1678 39 1 3.6500 -2.1465 1.2136 40 1 2.0412 -0.4730 3.3197 41 1 0.8242 1.6711 1.3814 42 1 0.8105 1.7430 3.2241 43 1 3.3466 1.7007 3.2451 44 1 3.3606 1.6291 1.4023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331801794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -0.733430 kcal Electronic energy + Delta-G solvation = -22194.540929 eV Core-core repulsion = 18954.560578 eV Total energy + Delta-G solvation = -3239.980351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62605 -39.25409 -36.37424 -34.77839 -33.60853 -32.78702 -31.51597 -29.96587 -28.64008 -25.81726 -24.67736 -22.91420 -22.60944 -21.47224 -20.73353 -20.36055 -19.54812 -18.10594 -17.30287 -16.41530 -15.96367 -15.51776 -15.16183 -14.97645 -14.50920 -14.25253 -14.07324 -13.54463 -13.43739 -13.16200 -12.98730 -12.66523 -12.36223 -12.27343 -11.83076 -11.61791 -11.59242 -11.30843 -11.19526 -11.03958 -11.00856 -10.73446 -10.64722 -10.38649 -10.30629 -9.94082 -9.55633 -9.27814 -9.13209 -8.60262 -8.47068 -8.24816 -6.09151 -4.11850 2.98071 3.31624 3.35237 3.38692 3.41322 3.57306 3.72324 4.25416 4.37250 4.40101 4.56539 4.62544 4.66838 4.69213 4.85189 5.02948 5.14657 5.21504 5.27920 5.30032 5.39390 5.50053 5.56843 5.66062 5.71579 5.73583 5.78380 5.88092 5.93204 6.02319 6.30126 6.39882 6.45987 6.73848 6.78388 6.80960 6.99663 7.22317 7.56464 7.63126 7.89926 8.25823 8.42658 8.92668 8.99634 9.52874 11.02522 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.002875 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.626678 B = 9737.338420 C =10001.870978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 H 0.058 0.942 4 C -0.126 4.126 5 C 0.156 3.844 6 H 0.098 0.902 7 N -0.748 5.748 8 C 0.698 3.302 9 O -0.595 6.595 10 N -0.739 5.739 11 C 0.140 3.860 12 C 0.014 3.986 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.025 3.975 22 N -0.480 5.480 23 C 0.016 3.984 24 C -0.189 4.189 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.998 -1.413 7.885 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.056 4.056 3 H 0.076 0.924 4 C -0.165 4.165 5 C 0.049 3.951 6 H 0.116 0.884 7 N -0.405 5.405 8 C 0.398 3.602 9 O -0.474 6.474 10 N -0.392 5.392 11 C 0.017 3.983 12 C -0.024 4.024 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.104 4.104 22 N -0.203 5.203 23 C -0.094 4.094 24 C -0.226 4.226 25 C -0.252 4.252 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.225 0.775 32 H 0.225 0.775 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.899 -2.786 8.220 24.489 hybrid contribution 1.351 1.509 -0.398 2.065 sum -21.548 -1.276 7.822 22.959 Atomic orbital electron populations 1.21852 0.93502 1.02772 1.01783 1.22872 0.96251 0.96198 0.90269 0.92410 1.22885 0.95111 1.01130 0.97372 1.21508 0.86492 0.94742 0.92364 0.88351 1.45308 1.06848 1.16501 1.71805 1.16085 0.80490 0.84941 0.78670 1.90890 1.80421 1.19404 1.56675 1.45548 1.09308 1.15492 1.68853 1.21590 0.76682 0.99508 1.00475 1.19314 0.94121 0.92535 0.96420 1.21021 0.92317 0.99087 1.43596 0.92258 1.24994 0.99268 0.94857 0.95164 1.69947 1.34275 1.05453 1.43731 0.86565 0.84204 0.78149 0.78579 1.20088 1.21256 1.20094 1.23417 0.89099 1.02294 0.95571 1.64833 1.18915 1.34974 1.01584 1.22968 1.03975 0.86656 0.95769 1.23480 0.94905 1.00203 1.04055 1.23409 0.94299 1.03825 1.03711 0.91845 0.92325 0.91662 0.90154 0.89177 0.77491 0.77482 0.92808 0.92772 0.96006 0.96040 0.92808 0.92242 0.89450 0.85802 0.87564 0.88469 0.88478 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.93 37.16 0.33 -0.64 16 2 C 0.05 0.43 2.23 -65.78 -0.15 0.28 16 3 H 0.06 0.49 5.76 -51.93 -0.30 0.19 16 4 C -0.13 -1.06 6.12 -24.87 -0.15 -1.21 16 5 C 0.16 1.76 3.29 -66.57 -0.22 1.54 16 6 H 0.10 1.30 7.64 -51.93 -0.40 0.90 16 7 N -0.75 -9.31 4.99 -57.35 -0.29 -9.60 16 8 C 0.70 12.11 8.56 -86.92 -0.74 11.37 16 9 O -0.60 -12.72 16.04 5.29 0.08 -12.63 16 10 N -0.74 -13.06 5.56 -65.22 -0.36 -13.42 16 11 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 12 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.02 0.29 6.38 -2.75 -0.02 0.27 16 22 N -0.48 -4.67 5.23 -214.72 -1.12 -5.79 16 23 C 0.02 0.14 6.26 -67.71 -0.42 -0.28 16 24 C -0.19 -1.43 8.61 -26.73 -0.23 -1.66 16 25 C -0.21 -1.89 8.86 -26.73 -0.24 -2.13 16 26 H 0.06 0.43 5.92 -51.93 -0.31 0.12 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.08 0.59 7.97 -51.93 -0.41 0.18 16 30 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 31 H 0.39 3.88 8.56 -40.82 -0.35 3.53 16 32 H 0.39 5.96 8.49 -40.82 -0.35 5.61 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 0.77 6.50 -51.93 -0.34 0.43 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 0.77 4.63 -51.93 -0.24 0.53 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.92 7.19 -51.93 -0.37 0.55 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.73 348.60 -10.38 -42.11 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.25 Total: 5.66 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.41 Total: -2.56 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -1.04 Total: -54.28 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.73 -10.38 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331801794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.378 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds