Wall clock time and date at job start Tue Mar 31 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.88100 * 2 1 4 4 C 1.54327 * 109.88319 * 238.97246 * 2 1 3 5 5 C 1.55143 * 103.01829 * 218.30777 * 4 2 1 6 6 H 1.08998 * 110.99165 * 277.53164 * 5 4 2 7 7 N 1.46501 * 110.98870 * 153.74659 * 5 4 2 8 8 C 1.34772 * 119.99879 * 158.14705 * 7 5 4 9 9 O 1.21596 * 120.00203 * 0.02562 * 8 7 5 10 10 N 1.34782 * 120.00108 * 179.97438 * 8 7 5 11 11 C 1.46498 * 119.99545 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46284 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47052 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99657 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00227 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00308 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99991 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47078 * 90.00097 * 17 15 13 19 19 H 1.48502 * 109.47107 * 210.00130 * 17 15 13 20 20 H 1.48501 * 109.47170 * 330.00105 * 17 15 13 21 21 C 1.54910 * 101.68526 * 35.63715 * 5 4 2 22 22 N 1.47438 * 109.89053 * 121.20637 * 2 1 3 23 23 C 1.46898 * 111.00175 * 356.14661 * 22 2 1 24 24 C 1.53007 * 117.49648 * 251.52739 * 23 22 2 25 25 C 1.53004 * 59.99943 * 252.50580 * 24 23 22 26 26 H 1.09007 * 109.47546 * 174.72180 * 1 2 3 27 27 H 1.09004 * 109.46903 * 294.72074 * 1 2 3 28 28 H 1.08999 * 109.47600 * 54.71994 * 1 2 3 29 29 H 1.09003 * 110.70581 * 99.92748 * 4 2 1 30 30 H 1.09000 * 110.70654 * 336.69475 * 4 2 1 31 31 H 0.96996 * 119.99957 * 338.14156 * 7 5 4 32 32 H 0.96994 * 119.99714 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47639 * 60.00966 * 11 10 8 34 34 H 1.08994 * 109.47498 * 299.99300 * 11 10 8 35 35 H 1.09004 * 109.47038 * 299.99403 * 12 11 10 36 36 H 1.08994 * 109.47229 * 60.00386 * 12 11 10 37 37 H 0.96999 * 120.00641 * 180.02562 * 16 15 13 38 38 H 1.08997 * 110.37350 * 81.77985 * 21 5 4 39 39 H 1.09000 * 110.37513 * 204.11777 * 21 5 4 40 40 H 1.08997 * 115.55218 * 37.23259 * 23 22 2 41 41 H 1.08997 * 117.49815 * 359.97438 * 24 23 22 42 42 H 1.08996 * 117.49674 * 145.01551 * 24 23 22 43 43 H 1.08993 * 117.49969 * 252.51314 * 25 24 23 44 44 H 1.08994 * 117.49554 * 107.48576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7481 -1.2436 5 6 3.2891 -1.5124 -0.6966 6 1 4.1658 -0.8657 -0.6635 7 7 3.5564 -2.7141 -1.4908 8 6 4.7855 -3.2670 -1.4835 9 8 5.6724 -2.7687 -0.8174 10 7 5.0314 -4.3729 -2.2137 11 6 6.3676 -4.9734 -2.2061 12 6 6.3771 -6.2074 -3.1107 13 6 7.7514 -6.8257 -3.1026 14 1 8.5394 -6.3825 -2.5116 15 6 8.0029 -7.9570 -3.8495 16 7 7.0436 -8.4963 -4.5694 17 14 9.7066 -8.7229 -3.8398 18 1 9.7921 -9.7262 -2.7483 19 1 9.9579 -9.3875 -5.1439 20 1 10.7241 -7.6640 -3.6197 21 6 2.8198 -1.8845 0.7321 22 7 2.0316 -0.7183 1.1858 23 6 0.9240 -1.1372 2.0552 24 6 0.7540 -0.4022 3.3863 25 6 1.2819 -1.8381 3.3673 26 1 -0.3634 -1.0233 -0.0945 27 1 -0.3633 0.4298 0.9335 28 1 -0.3634 0.5935 -0.8389 29 1 2.3512 -0.0434 -2.0207 30 1 1.3053 -1.4447 -1.6192 31 1 2.8488 -3.1119 -2.0218 32 1 4.3238 -4.7706 -2.7447 33 1 6.6287 -5.2661 -1.1892 34 1 7.0939 -4.2485 -2.5735 35 1 5.6507 -6.9326 -2.7437 36 1 6.1162 -5.9144 -4.1276 37 1 7.2203 -9.2924 -5.0946 38 1 2.1953 -2.7774 0.7059 39 1 3.6786 -2.0402 1.3851 40 1 0.0200 -1.4632 1.5408 41 1 1.4641 0.3918 3.6171 42 1 -0.2621 -0.2444 3.7478 43 1 0.6132 -2.6249 3.7162 44 1 2.3392 -1.9885 3.5853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331801795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:00 Heat of formation + Delta-G solvation = -1.967064 kcal Electronic energy + Delta-G solvation = -21852.308771 eV Core-core repulsion = 18612.274925 eV Total energy + Delta-G solvation = -3240.033846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35279 -39.17744 -36.48376 -34.84722 -33.95799 -32.80538 -31.15179 -30.04759 -28.80689 -25.68892 -24.65856 -22.79113 -22.63746 -21.40835 -20.80959 -20.50440 -19.28125 -18.10892 -17.09161 -16.55936 -16.20380 -15.29537 -15.07259 -14.91604 -14.52443 -14.19984 -14.07589 -13.83731 -13.41799 -13.24590 -13.08623 -12.59960 -12.52111 -12.26878 -11.75916 -11.66936 -11.61834 -11.39791 -11.18020 -11.02409 -10.93781 -10.62935 -10.62236 -10.33567 -10.27381 -9.93043 -9.55027 -9.25525 -9.06472 -8.52721 -8.45790 -8.23988 -6.08626 -4.11166 2.91810 3.30352 3.36391 3.41027 3.51004 3.59079 3.66332 4.28963 4.40412 4.46667 4.55352 4.69433 4.73807 4.76990 4.93820 5.02388 5.08005 5.13116 5.22190 5.28591 5.38089 5.43163 5.49269 5.57262 5.71188 5.73909 5.85618 5.93044 5.95933 6.01965 6.31274 6.41124 6.53914 6.75668 6.79486 6.88307 7.00823 7.23916 7.57596 7.64105 7.90689 8.26615 8.43728 8.93652 9.00635 9.53618 11.03104 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035233 B = 0.002621 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.509037 B =10680.452278 C =10986.089094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.090 0.910 4 C -0.146 4.146 5 C 0.159 3.841 6 H 0.103 0.897 7 N -0.745 5.745 8 C 0.699 3.301 9 O -0.595 6.595 10 N -0.738 5.738 11 C 0.140 3.860 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.035 3.965 22 N -0.496 5.496 23 C -0.006 4.006 24 C -0.164 4.164 25 C -0.175 4.175 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 16.114 9.562 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 H 0.108 0.892 4 C -0.185 4.185 5 C 0.052 3.948 6 H 0.121 0.879 7 N -0.401 5.401 8 C 0.398 3.602 9 O -0.473 6.473 10 N -0.392 5.392 11 C 0.017 3.983 12 C -0.025 4.025 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.094 4.094 22 N -0.221 5.221 23 C -0.115 4.115 24 C -0.201 4.201 25 C -0.213 4.213 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.428 16.737 10.339 25.630 hybrid contribution -0.365 -1.500 -1.045 1.865 sum -16.794 15.237 9.294 24.507 Atomic orbital electron populations 1.22312 0.95661 1.01739 1.02550 1.22334 0.94070 0.98890 0.88106 0.89179 1.23174 0.97275 0.99812 0.98288 1.21774 0.98038 0.85892 0.89139 0.87865 1.45046 1.11682 1.30906 1.52423 1.16083 0.82447 0.80945 0.80685 1.90900 1.44647 1.64716 1.47068 1.45541 1.15447 1.28262 1.49921 1.21590 0.79939 0.95871 1.00859 1.19326 0.98078 0.90754 0.94299 1.21060 0.95935 1.10826 1.28070 0.92201 1.24994 0.97271 0.96880 0.95179 1.69952 1.32352 1.21633 1.29487 0.86509 0.84258 0.79423 0.77351 1.20557 1.21189 1.19699 1.23424 0.97666 0.91904 0.96375 1.63507 1.19947 1.22577 1.16048 1.22707 0.95591 1.04629 0.88543 1.23032 1.01967 0.95678 0.99472 1.23049 1.02518 0.95614 1.00111 0.92559 0.91433 0.92055 0.89916 0.90765 0.77268 0.77439 0.92770 0.92772 0.96010 0.95987 0.92871 0.93092 0.89560 0.88370 0.88237 0.89022 0.88836 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 7.67 37.16 0.29 -0.79 16 2 C 0.07 0.61 4.02 -66.72 -0.27 0.34 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.21 6.11 -24.90 -0.15 -1.36 16 5 C 0.16 1.83 3.36 -65.79 -0.22 1.61 16 6 H 0.10 1.43 7.63 -51.93 -0.40 1.04 16 7 N -0.74 -9.39 5.22 -56.58 -0.30 -9.68 16 8 C 0.70 12.23 8.57 -86.92 -0.74 11.49 16 9 O -0.59 -12.85 16.04 5.28 0.08 -12.76 16 10 N -0.74 -13.10 5.56 -65.23 -0.36 -13.46 16 11 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.03 0.40 6.05 -2.27 -0.01 0.39 16 22 N -0.50 -4.93 5.32 -215.40 -1.15 -6.08 16 23 C -0.01 -0.05 3.54 -67.71 -0.24 -0.29 16 24 C -0.16 -1.27 10.43 -26.73 -0.28 -1.55 16 25 C -0.18 -1.50 10.01 -26.73 -0.27 -1.76 16 26 H 0.06 0.37 6.85 -51.92 -0.36 0.02 16 27 H 0.07 0.44 7.04 -51.93 -0.37 0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 31 H 0.39 3.87 8.55 -40.82 -0.35 3.52 16 32 H 0.39 5.96 8.49 -40.82 -0.35 5.61 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.05 0.59 7.81 -51.93 -0.41 0.18 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 0.78 5.59 -51.93 -0.29 0.49 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -31.96 354.65 -10.66 -42.62 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.52 Total: 5.08 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.48 Total: -2.02 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.07 Total: -54.72 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.96 -10.66 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331801795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.649 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds