Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.46512 * 2 1 4 4 C 1.54380 * 110.40879 * 122.41278 * 2 1 3 5 5 C 1.54264 * 105.06204 * 142.63213 * 4 2 1 6 6 H 1.08995 * 110.32483 * 241.10627 * 5 4 2 7 7 N 1.46499 * 110.32501 * 118.89495 * 5 4 2 8 8 C 1.34780 * 119.99792 * 157.91125 * 7 5 4 9 9 O 1.21582 * 119.99872 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99898 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00377 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47441 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47257 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00016 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00199 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00046 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47024 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46830 * 119.99595 * 17 15 13 20 20 H 1.48497 * 109.47296 * 239.99665 * 17 15 13 21 21 C 1.54385 * 105.05937 * 359.97438 * 5 4 2 22 22 N 1.48556 * 104.59520 * 336.15067 * 21 5 4 23 23 C 1.46904 * 111.00162 * 159.03833 * 22 21 5 24 24 C 1.52999 * 117.49893 * 128.32869 * 23 22 21 25 25 C 1.52991 * 117.49668 * 59.66480 * 23 22 21 26 26 H 1.09003 * 109.47332 * 182.41096 * 1 2 3 27 27 H 1.08996 * 109.47232 * 302.42045 * 1 2 3 28 28 H 1.09005 * 109.47002 * 62.41515 * 1 2 3 29 29 H 1.09005 * 110.32530 * 261.52494 * 4 2 1 30 30 H 1.08995 * 110.32857 * 23.73805 * 4 2 1 31 31 H 0.96994 * 119.99728 * 337.90645 * 7 5 4 32 32 H 0.97007 * 119.99935 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.46843 * 300.00399 * 11 10 8 34 34 H 1.09003 * 109.46869 * 59.99516 * 11 10 8 35 35 H 1.09003 * 109.46977 * 300.00127 * 12 11 10 36 36 H 1.09003 * 109.47608 * 59.99817 * 12 11 10 37 37 H 0.97002 * 119.99589 * 180.02562 * 16 15 13 38 38 H 1.08997 * 110.41336 * 217.37059 * 21 5 4 39 39 H 1.09001 * 110.50872 * 94.97544 * 21 5 4 40 40 H 1.09007 * 115.54674 * 273.99497 * 23 22 21 41 41 H 1.08999 * 117.49603 * 359.97438 * 24 23 22 42 42 H 1.08993 * 117.49751 * 145.02486 * 24 23 22 43 43 H 1.09000 * 117.50215 * 214.97710 * 25 23 22 44 44 H 1.09000 * 117.50533 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0683 -0.7756 1.2215 5 6 3.3177 -1.5189 0.7055 6 1 3.1860 -2.5961 0.8067 7 7 4.5090 -1.0800 1.4364 8 6 5.5997 -1.8703 1.4840 9 8 5.5947 -2.9478 0.9207 10 7 6.6959 -1.4663 2.1560 11 6 7.8813 -2.3256 2.2082 12 6 8.9745 -1.6372 3.0277 13 6 10.1941 -2.5208 3.0809 14 1 10.1897 -3.4780 2.5806 15 6 11.3152 -2.1079 3.7692 16 7 11.3203 -0.9426 4.3789 17 14 12.8266 -3.2036 3.8357 18 1 12.5664 -4.4525 3.0756 19 1 13.9821 -2.4898 3.2353 20 1 13.1326 -3.5397 5.2494 21 6 3.4287 -1.1305 -0.7845 22 7 2.0477 -0.7472 -1.1754 23 6 2.0561 0.1001 -2.3755 24 6 1.1529 -0.3140 -3.5389 25 6 2.6702 -0.4849 -3.6488 26 1 -0.3634 -1.0268 0.0432 27 1 -0.3633 0.5509 0.8675 28 1 -0.3633 0.4759 -0.9109 29 1 2.3415 -0.0841 2.0186 30 1 1.3235 -1.4880 1.5760 31 1 4.5128 -0.2205 1.8861 32 1 6.7000 -0.6065 2.6051 33 1 7.6211 -3.2754 2.6754 34 1 8.2442 -2.5058 1.1963 35 1 9.2347 -0.6872 2.5609 36 1 8.6113 -1.4573 4.0396 37 1 12.1092 -0.6520 4.8628 38 1 3.7686 -1.9813 -1.3749 39 1 4.1072 -0.2866 -0.9096 40 1 2.1893 1.1671 -2.1966 41 1 0.5528 -1.2152 -3.4141 42 1 0.6923 0.4806 -4.1258 43 1 3.2069 0.1973 -4.3081 44 1 3.0683 -1.4982 -3.5961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331801797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -8.732361 kcal Electronic energy + Delta-G solvation = -21811.507319 eV Core-core repulsion = 18571.180107 eV Total energy + Delta-G solvation = -3240.327211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22012 -39.02103 -36.57039 -34.84270 -33.90037 -32.79973 -31.16475 -30.05296 -28.68913 -25.76176 -24.68072 -22.71920 -22.26536 -21.16054 -20.63623 -20.42240 -20.39425 -18.09083 -16.90785 -16.36906 -15.88439 -15.39636 -15.08445 -14.96038 -14.53721 -14.38177 -14.00910 -13.65364 -13.42719 -13.28798 -12.87636 -12.59916 -12.28057 -12.20300 -12.04576 -11.76595 -11.54437 -11.38432 -11.17185 -11.04467 -10.89568 -10.63172 -10.60882 -10.35621 -10.29269 -9.91528 -9.55188 -9.24043 -9.05858 -8.71366 -8.48432 -8.24507 -6.09023 -4.11399 2.96925 3.28918 3.36513 3.42007 3.48388 3.58515 3.64756 4.32557 4.40211 4.43840 4.65129 4.69990 4.71823 4.77668 4.98970 5.08350 5.13463 5.20459 5.28302 5.30255 5.41768 5.44276 5.53191 5.66553 5.69218 5.76051 5.89894 5.92086 5.95113 5.99818 6.31181 6.40995 6.42110 6.74687 6.79557 6.84049 7.01245 7.24468 7.57739 7.63933 7.90567 8.26606 8.44392 8.93822 9.01322 9.53419 11.02756 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.002658 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.923343 B =10532.788071 C =10930.721241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.053 0.947 4 C -0.128 4.128 5 C 0.163 3.837 6 H 0.098 0.902 7 N -0.748 5.748 8 C 0.698 3.302 9 O -0.596 6.596 10 N -0.739 5.739 11 C 0.140 3.860 12 C 0.013 3.987 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.027 3.973 22 N -0.478 5.478 23 C -0.005 4.005 24 C -0.161 4.161 25 C -0.175 4.175 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 6.062 -10.034 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.071 0.929 4 C -0.166 4.166 5 C 0.056 3.944 6 H 0.117 0.883 7 N -0.404 5.404 8 C 0.398 3.602 9 O -0.474 6.474 10 N -0.392 5.392 11 C 0.018 3.982 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.102 4.102 22 N -0.203 5.203 23 C -0.114 4.114 24 C -0.199 4.199 25 C -0.212 4.212 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.689 4.674 -10.572 25.464 hybrid contribution 1.474 1.156 0.657 1.985 sum -21.215 5.830 -9.915 24.132 Atomic orbital electron populations 1.21689 0.93545 1.02531 1.01436 1.22657 0.96326 0.95751 0.89953 0.92876 1.22717 0.97083 0.99607 0.97216 1.21379 0.83017 1.00400 0.89596 0.88346 1.45309 1.14074 1.22398 1.58657 1.16097 0.80245 0.83908 0.79968 1.90890 1.83007 1.22463 1.51056 1.45548 1.14283 1.23382 1.56007 1.21583 0.82973 0.92993 1.00699 1.19328 0.91902 0.96370 0.94891 1.21098 0.97793 1.04008 1.32907 0.92153 1.25002 0.98893 0.95227 0.95245 1.69969 1.29535 1.19743 1.34164 0.86453 0.82587 0.80719 0.77800 1.19551 1.20951 1.20948 1.23523 0.89333 1.00976 0.96369 1.65212 1.18041 1.35425 1.01592 1.22581 1.06537 0.95150 0.87142 1.23035 0.93213 1.03457 1.00194 1.23063 0.96291 1.02850 0.99019 0.91752 0.92375 0.92559 0.90450 0.89677 0.77319 0.77454 0.92783 0.92807 0.96017 0.95984 0.92931 0.89441 0.93149 0.89324 0.88159 0.88962 0.88750 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.37 37.15 0.35 -0.60 16 2 C 0.06 0.51 2.88 -66.06 -0.19 0.32 16 3 H 0.05 0.44 7.79 -51.93 -0.40 0.03 16 4 C -0.13 -1.08 6.31 -25.35 -0.16 -1.24 16 5 C 0.16 1.88 3.36 -66.54 -0.22 1.66 16 6 H 0.10 1.35 7.65 -51.93 -0.40 0.96 16 7 N -0.75 -9.41 5.10 -57.32 -0.29 -9.70 16 8 C 0.70 12.20 8.56 -86.92 -0.74 11.45 16 9 O -0.60 -12.81 16.04 5.29 0.08 -12.73 16 10 N -0.74 -13.11 5.56 -65.23 -0.36 -13.47 16 11 C 0.14 3.04 5.61 -4.05 -0.02 3.02 16 12 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.03 0.31 5.75 -2.18 -0.01 0.30 16 22 N -0.48 -4.72 5.22 -214.22 -1.12 -5.84 16 23 C 0.00 -0.04 4.99 -67.72 -0.34 -0.38 16 24 C -0.16 -1.26 10.46 -26.69 -0.28 -1.54 16 25 C -0.17 -1.51 9.94 -26.70 -0.27 -1.78 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 29 H 0.08 0.56 7.63 -51.93 -0.40 0.16 16 30 H 0.08 0.68 7.82 -51.93 -0.41 0.28 16 31 H 0.39 3.85 8.32 -40.82 -0.34 3.51 16 32 H 0.39 5.96 8.49 -40.82 -0.35 5.62 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.16 8.06 -51.93 -0.42 0.75 16 39 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 40 H 0.09 0.76 7.82 -51.92 -0.41 0.35 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -31.91 359.82 -10.70 -42.60 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.70 Total: 4.64 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.44 Total: -1.89 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.04 Total: -54.50 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.91 -10.70 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331801797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.872 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds