Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.72783 * 2 1 4 4 C 1.54939 * 110.66493 * 123.09604 * 2 1 3 5 5 C 1.54597 * 103.08297 * 155.93800 * 4 2 1 6 6 H 1.09003 * 110.30806 * 96.96852 * 5 4 2 7 7 N 1.46500 * 110.31140 * 219.03735 * 5 4 2 8 8 C 1.34777 * 119.99919 * 205.00274 * 7 5 4 9 9 O 1.21584 * 120.00109 * 359.97438 * 8 7 5 10 10 N 1.34772 * 119.99578 * 180.02562 * 8 7 5 11 11 C 1.46500 * 119.99690 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.47144 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47292 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99695 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99793 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47180 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46654 * 119.99745 * 17 15 13 20 20 H 1.48499 * 109.47309 * 239.99884 * 17 15 13 21 21 C 1.53988 * 105.13917 * 337.95434 * 5 4 2 22 22 N 1.47903 * 107.05834 * 358.77371 * 21 5 4 23 23 C 1.46897 * 110.99978 * 145.84614 * 22 21 5 24 24 C 1.53003 * 117.50195 * 136.50225 * 23 22 21 25 25 C 1.53007 * 117.50315 * 67.84171 * 23 22 21 26 26 H 1.08993 * 109.47514 * 298.36105 * 1 2 3 27 27 H 1.09008 * 109.46973 * 58.36175 * 1 2 3 28 28 H 1.08999 * 109.47238 * 178.35270 * 1 2 3 29 29 H 1.09005 * 110.72385 * 37.49055 * 4 2 1 30 30 H 1.08999 * 110.72326 * 274.38596 * 4 2 1 31 31 H 0.96997 * 119.99575 * 24.99752 * 7 5 4 32 32 H 0.97005 * 120.00610 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.47219 * 299.99102 * 11 10 8 34 34 H 1.08992 * 109.47784 * 60.00116 * 11 10 8 35 35 H 1.09000 * 109.46995 * 300.00278 * 12 11 10 36 36 H 1.09003 * 109.47118 * 59.99931 * 12 11 10 37 37 H 0.96998 * 119.99510 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.91985 * 118.12362 * 21 5 4 39 39 H 1.09004 * 109.92006 * 239.41952 * 21 5 4 40 40 H 1.09008 * 115.55040 * 282.17054 * 23 22 21 41 41 H 1.08998 * 117.49887 * 359.97438 * 24 23 22 42 42 H 1.09000 * 117.50404 * 145.01753 * 24 23 22 43 43 H 1.08998 * 117.50144 * 214.98374 * 25 23 22 44 44 H 1.09002 * 117.49485 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 1.2145 5 6 3.4868 -1.2198 0.7470 6 1 4.2376 -0.5257 1.1248 7 7 3.7810 -2.5816 1.1999 8 6 5.0593 -2.9762 1.3629 9 8 5.9684 -2.2022 1.1336 10 7 5.3299 -4.2292 1.7790 11 6 6.7194 -4.6584 1.9556 12 6 6.7476 -6.1123 2.4316 13 6 8.1770 -6.5539 2.6127 14 1 8.9846 -5.8665 2.4083 15 6 8.4539 -7.8358 3.0383 16 7 7.4704 -8.6729 3.2867 17 14 10.2257 -8.3834 3.2620 18 1 11.1373 -7.2622 2.9197 19 1 10.4449 -8.7852 4.6748 20 1 10.5034 -9.5378 2.3702 21 6 3.4336 -1.1678 -0.7910 22 7 2.0607 -0.7635 -1.1643 23 6 2.0674 0.0649 -2.3773 24 6 1.0066 -0.2296 -3.4399 25 6 2.4681 -0.6092 -3.6912 26 1 -0.3634 0.4881 0.9042 27 1 -0.3633 0.5391 -0.8750 28 1 -0.3633 -1.0272 -0.0295 29 1 1.4560 -1.6644 1.4172 30 1 2.1400 -0.1521 2.0949 31 1 3.0556 -3.1992 1.3825 32 1 4.6046 -4.8470 1.9616 33 1 7.2485 -4.5763 1.0061 34 1 7.2041 -4.0241 2.6977 35 1 6.2186 -6.1940 3.3811 36 1 6.2628 -6.7469 1.6898 37 1 7.6652 -9.5746 3.5865 38 1 4.1503 -0.4356 -1.1629 39 1 3.6561 -2.1518 -1.2038 40 1 2.3619 1.1047 -2.2349 41 1 0.3040 -1.0384 -3.2390 42 1 0.6034 0.6162 -3.9967 43 1 3.0259 -0.0129 -4.4132 44 1 2.7272 -1.6674 -3.6553 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331801799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = -9.253999 kcal Electronic energy + Delta-G solvation = -21804.478031 eV Core-core repulsion = 18564.128200 eV Total energy + Delta-G solvation = -3240.349831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18101 -38.99793 -36.54976 -34.82329 -33.86420 -32.78557 -31.20437 -30.02663 -28.67255 -25.77518 -24.65585 -22.69008 -22.21799 -21.15672 -20.86641 -20.63617 -19.90608 -18.03281 -16.69010 -16.51828 -16.20373 -15.56840 -15.03543 -14.86672 -14.50880 -14.25512 -13.88340 -13.64623 -13.38274 -13.20761 -12.85809 -12.60827 -12.33401 -12.25588 -11.95957 -11.76725 -11.61955 -11.39995 -11.16017 -11.03660 -10.98364 -10.60778 -10.59893 -10.32991 -10.28024 -9.90154 -9.53699 -9.22660 -9.00500 -8.68241 -8.47236 -8.22755 -6.07831 -4.10214 3.04438 3.29636 3.37218 3.42707 3.46949 3.56382 3.60297 4.32687 4.41633 4.44066 4.65681 4.68484 4.76231 4.81779 4.99008 5.05504 5.12587 5.19721 5.29426 5.31672 5.41416 5.49769 5.52600 5.62188 5.67869 5.76470 5.83855 5.91651 5.94692 5.99397 6.31949 6.42296 6.60759 6.69384 6.80383 6.85915 7.03069 7.28278 7.59427 7.65589 7.91800 8.28063 8.46835 8.95041 9.02940 9.54513 11.03954 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.002652 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.538829 B =10554.878342 C =10867.632793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.056 0.944 4 C -0.126 4.126 5 C 0.157 3.843 6 H 0.095 0.905 7 N -0.743 5.743 8 C 0.698 3.302 9 O -0.599 6.599 10 N -0.738 5.738 11 C 0.140 3.860 12 C 0.012 3.988 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.030 3.970 22 N -0.485 5.485 23 C -0.005 4.005 24 C -0.161 4.161 25 C -0.171 4.171 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.395 0.605 32 H 0.393 0.607 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 17.522 -8.706 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.043 4.043 3 H 0.074 0.926 4 C -0.165 4.165 5 C 0.050 3.950 6 H 0.113 0.887 7 N -0.399 5.399 8 C 0.398 3.602 9 O -0.478 6.478 10 N -0.392 5.392 11 C 0.018 3.982 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.099 4.099 22 N -0.210 5.210 23 C -0.114 4.114 24 C -0.199 4.199 25 C -0.208 4.208 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.229 0.771 32 H 0.226 0.774 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.405 17.586 -8.964 25.666 hybrid contribution 0.794 -0.311 0.405 0.944 sum -15.611 17.276 -8.559 24.808 Atomic orbital electron populations 1.21636 0.93434 1.02593 1.01411 1.22804 0.96227 0.95676 0.89623 0.92599 1.22869 0.95241 1.00845 0.97545 1.21519 0.96758 0.83912 0.92771 0.88714 1.45204 1.06496 1.14287 1.73942 1.16100 0.82833 0.82943 0.78332 1.90881 1.44600 1.53699 1.58644 1.45537 1.10782 1.11571 1.71267 1.21581 0.78279 0.98199 1.00183 1.19332 0.98074 0.88323 0.96770 1.21098 0.91881 0.97552 1.45282 0.92177 1.25001 0.97470 0.96631 0.95260 1.69968 1.31186 1.06190 1.46031 0.86458 0.84716 0.78668 0.77737 1.19572 1.20956 1.20946 1.23305 0.88971 1.01982 0.95665 1.64700 1.18990 1.35787 1.01557 1.22565 1.05673 0.95642 0.87531 1.23014 0.92378 1.03381 1.01135 1.23019 0.98130 1.01934 0.97734 0.92279 0.92571 0.91769 0.89871 0.90204 0.77053 0.77377 0.92825 0.92834 0.95977 0.95971 0.92930 0.92958 0.89660 0.89583 0.88203 0.88989 0.88783 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.50 37.16 0.35 -0.57 16 2 C 0.06 0.54 2.93 -65.52 -0.19 0.34 16 3 H 0.06 0.46 7.91 -51.93 -0.41 0.04 16 4 C -0.13 -1.07 6.19 -24.87 -0.15 -1.23 16 5 C 0.16 1.81 3.34 -66.58 -0.22 1.59 16 6 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 7 N -0.74 -9.53 5.01 -57.35 -0.29 -9.82 16 8 C 0.70 12.29 8.56 -86.92 -0.74 11.54 16 9 O -0.60 -12.92 15.99 5.29 0.08 -12.84 16 10 N -0.74 -13.22 5.56 -65.22 -0.36 -13.58 16 11 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.03 0.34 6.27 -2.76 -0.02 0.32 16 22 N -0.49 -4.72 5.13 -214.34 -1.10 -5.82 16 23 C 0.00 -0.04 4.76 -67.71 -0.32 -0.37 16 24 C -0.16 -1.24 10.46 -26.69 -0.28 -1.52 16 25 C -0.17 -1.45 10.18 -26.69 -0.27 -1.73 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 4.09 8.39 -40.82 -0.34 3.75 16 32 H 0.39 6.06 8.49 -40.82 -0.35 5.72 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.05 0.64 7.77 -51.93 -0.40 0.23 16 39 H 0.09 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.09 0.73 7.97 -51.92 -0.41 0.32 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -31.96 360.75 -10.67 -42.63 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.73 Total: 4.76 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.43 Total: -1.71 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -1.01 Total: -54.78 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.96 -10.67 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331801799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.374 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds