Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00303 * 2 1 4 4 O 1.21586 * 120.00416 * 179.97438 * 3 2 1 5 5 N 1.34784 * 119.99593 * 0.02562 * 3 2 1 6 6 C 1.46497 * 119.99800 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46616 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99661 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00131 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00062 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46898 * 90.00149 * 11 9 7 13 13 H 1.48501 * 109.47064 * 210.00483 * 11 9 7 14 14 H 1.48496 * 109.46850 * 329.99953 * 11 9 7 15 15 C 1.46506 * 120.00313 * 180.02562 * 2 1 3 16 16 C 1.53136 * 109.42720 * 60.26046 * 15 2 1 17 17 C 1.53712 * 108.88802 * 185.90915 * 16 15 2 18 18 H 1.09007 * 112.12371 * 188.36801 * 17 16 15 19 19 C 1.54603 * 107.80929 * 312.37707 * 17 16 15 20 20 C 1.54282 * 104.84291 * 88.56010 * 19 17 16 21 21 C 1.54608 * 104.84003 * 359.97438 * 20 19 17 22 22 H 1.09004 * 112.22034 * 147.48033 * 21 20 19 23 23 C 1.53137 * 109.42377 * 300.00090 * 15 2 1 24 24 N 1.48711 * 104.22644 * 25.17901 * 21 20 19 25 25 C 1.46898 * 111.00253 * 77.51025 * 24 21 20 26 26 H 1.08996 * 109.46845 * 269.99320 * 1 2 3 27 27 H 1.08995 * 109.46810 * 29.99980 * 1 2 3 28 28 H 1.09005 * 109.46841 * 149.99772 * 1 2 3 29 29 H 0.96999 * 119.99879 * 359.97438 * 5 3 2 30 30 H 1.08992 * 109.47376 * 299.99726 * 6 5 3 31 31 H 1.09001 * 109.46924 * 60.00542 * 6 5 3 32 32 H 0.97002 * 120.00311 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.42772 * 180.10189 * 15 2 1 34 34 H 1.09002 * 109.57090 * 305.73462 * 16 15 2 35 35 H 1.09003 * 109.56692 * 66.09020 * 16 15 2 36 36 H 1.09002 * 110.36842 * 329.72056 * 19 17 16 37 37 H 1.09001 * 110.45854 * 207.44828 * 19 17 16 38 38 H 1.09000 * 110.36684 * 241.16100 * 20 19 17 39 39 H 1.08995 * 110.46244 * 118.88318 * 20 19 17 40 40 H 1.08993 * 109.56870 * 293.90998 * 23 15 2 41 41 H 1.08996 * 109.56866 * 54.27269 * 23 15 2 42 42 H 1.09004 * 109.47389 * 60.00124 * 25 24 21 43 43 H 1.08995 * 109.47407 * 180.02562 * 25 24 21 44 44 H 1.09010 * 109.46958 * 300.00265 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0011 7 6 1.2181 4.7485 0.0010 8 1 0.1564 4.5511 0.0009 9 6 1.6777 6.0484 0.0009 10 7 2.9707 6.2888 0.0004 11 14 0.4638 7.4683 0.0015 12 1 0.1427 7.8444 1.4017 13 1 1.0634 8.6325 -0.6988 14 1 -0.7797 7.0566 -0.6981 15 6 2.1976 -1.2687 -0.0006 16 6 1.8319 -2.0675 -1.2549 17 6 2.4894 -3.4544 -1.1709 18 1 2.3858 -4.0147 -2.1002 19 6 3.9693 -3.2527 -0.7717 20 6 3.9663 -3.2551 0.7711 21 6 2.4847 -3.4574 1.1639 22 1 2.3772 -4.0207 2.0909 23 6 1.8269 -2.0714 1.2498 24 7 1.8886 -4.1560 -0.0057 25 6 2.2476 -5.5804 -0.0073 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 0.4950 2.3344 0.0005 30 1 2.8241 3.6605 0.8910 31 1 2.8241 3.6612 -0.8889 32 1 3.2940 7.2033 0.0000 33 1 3.2690 -1.0687 0.0014 34 1 0.7492 -2.1796 -1.3136 35 1 2.1949 -1.5444 -2.1396 36 1 4.3373 -2.2985 -1.1488 37 1 4.5812 -4.0711 -1.1511 38 1 4.3327 -2.3021 1.1527 39 1 4.5753 -4.0748 1.1521 40 1 2.1864 -1.5511 2.1375 41 1 0.7441 -2.1838 1.3037 42 1 1.8787 -6.0492 0.9050 43 1 1.7992 -6.0672 -0.8733 44 1 3.3320 -5.6817 -0.0550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334239905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -16.095113 kcal Electronic energy + Delta-G solvation = -23148.932368 eV Core-core repulsion = 19908.285884 eV Total energy + Delta-G solvation = -3240.646484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12790 -39.12743 -35.53621 -34.16180 -32.69012 -31.89488 -31.43715 -30.36597 -27.16202 -26.91836 -25.60059 -24.31769 -23.00524 -21.74770 -20.55325 -19.41266 -18.47844 -18.03272 -16.70085 -16.15981 -15.68303 -15.20213 -15.10077 -14.56063 -14.30959 -14.20266 -13.44325 -13.23821 -13.16876 -13.01527 -12.86996 -12.70986 -12.68714 -12.15316 -12.05151 -11.75804 -11.70520 -11.63104 -11.16639 -11.02687 -10.93182 -10.86553 -10.59031 -10.45448 -10.29502 -10.19828 -9.33749 -9.28521 -8.71953 -8.69532 -8.30770 -7.67675 -6.12517 -4.18856 3.24119 3.26636 3.33055 3.36129 3.74512 3.95882 4.34059 4.52827 4.54207 4.69150 4.88285 4.96966 5.09568 5.11939 5.15435 5.19237 5.22301 5.23516 5.32265 5.37067 5.46536 5.62973 5.64721 5.65150 5.68140 5.81513 5.86929 5.89505 5.97450 6.05527 6.11193 6.21634 6.37813 6.67301 6.82349 6.95491 7.23241 7.56338 7.59704 7.61386 7.91076 8.06105 8.79899 8.96055 9.37314 9.52173 10.97772 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042913 B = 0.003414 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.320377 B = 8198.895441 C = 8455.182660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.637 5.637 3 C 0.695 3.305 4 O -0.602 6.602 5 N -0.729 5.729 6 C 0.266 3.734 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.886 5.886 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.158 3.842 16 C -0.118 4.118 17 C 0.067 3.933 18 H 0.094 0.906 19 C -0.154 4.154 20 C -0.154 4.154 21 C 0.066 3.934 22 H 0.093 0.907 23 C -0.116 4.116 24 N -0.507 5.507 25 C 0.013 3.987 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.386 0.614 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 -22.432 -0.100 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.375 5.375 3 C 0.396 3.604 4 O -0.481 6.481 5 N -0.382 5.382 6 C 0.145 3.855 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.731 3.269 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.053 3.947 16 C -0.157 4.157 17 C -0.042 4.042 18 H 0.112 0.888 19 C -0.193 4.193 20 C -0.193 4.193 21 C -0.043 4.043 22 H 0.112 0.888 23 C -0.155 4.155 24 N -0.229 5.229 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.220 0.780 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.422 -22.181 -0.105 22.444 hybrid contribution -0.180 0.735 0.021 0.757 sum -3.602 -21.446 -0.084 21.746 Atomic orbital electron populations 1.21616 0.80829 1.02583 1.01258 1.47090 1.05799 1.04821 1.79806 1.16107 0.85503 0.80539 0.78247 1.90838 1.11829 1.86243 1.59206 1.45852 1.09662 1.05659 1.77023 1.18965 0.92004 0.76994 0.97528 1.21226 0.92961 0.90740 1.52985 0.92026 1.24944 0.95390 0.98885 0.94806 1.69980 1.12557 1.20737 1.49047 0.86421 0.80847 0.81475 0.78186 1.20491 1.21031 1.19770 1.20970 0.98381 0.81817 0.93504 1.22088 1.01476 0.93766 0.98349 1.23003 0.91836 0.94944 0.94452 0.88827 1.22972 0.97695 1.02768 0.95840 1.22974 0.97690 1.02762 0.95855 1.23010 0.91873 0.95024 0.94373 0.88848 1.22058 1.01453 0.93682 0.98329 1.65453 1.53063 1.02062 1.02313 1.22451 0.99032 0.89687 1.02426 0.93241 0.91477 0.91196 0.77950 0.95812 0.95819 0.92499 0.87803 0.90768 0.91236 0.90167 0.91907 0.90185 0.91909 0.91280 0.90829 0.91582 0.91541 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 9.15 59.85 0.55 1.55 16 2 N -0.64 -10.28 2.76 -179.51 -0.50 -10.77 16 3 C 0.69 14.97 8.28 -86.91 -0.72 14.25 16 4 O -0.60 -15.33 15.67 5.29 0.08 -15.25 16 5 N -0.73 -16.24 5.41 -66.42 -0.36 -16.60 16 6 C 0.27 7.29 5.43 -5.19 -0.03 7.26 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 11 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 C 0.16 2.21 2.16 -67.79 -0.15 2.06 16 16 C -0.12 -1.39 4.98 -26.29 -0.13 -1.52 16 17 C 0.07 0.67 3.67 -65.51 -0.24 0.43 16 18 H 0.09 0.84 8.12 -51.92 -0.42 0.42 16 19 C -0.15 -1.59 5.29 -25.22 -0.13 -1.72 16 20 C -0.15 -1.59 5.33 -25.22 -0.13 -1.72 16 21 C 0.07 0.67 3.67 -65.52 -0.24 0.43 16 22 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 23 C -0.12 -1.38 4.99 -26.32 -0.13 -1.51 16 24 N -0.51 -4.97 5.29 -221.16 -1.17 -6.14 16 25 C 0.01 0.10 9.46 60.06 0.57 0.67 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 28 H 0.07 0.72 6.34 -51.93 -0.33 0.40 16 29 H 0.39 7.48 6.05 -40.82 -0.25 7.24 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.10 1.72 4.26 -51.93 -0.22 1.50 16 34 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.96 7.03 -51.93 -0.37 0.59 16 37 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 38 H 0.08 0.96 7.03 -51.93 -0.37 0.59 16 39 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.85 7.49 -51.93 -0.39 0.46 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.23 6.89 -51.92 -0.36 -0.13 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -32.42 333.60 -9.52 -41.94 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.11 Total: 4.85 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.21 Total: 6.60 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -1.29 Total: -59.21 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.42 -9.52 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334239905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.846 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds