Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.99843 * 2 1 4 4 C 1.54333 * 109.99108 * 238.96282 * 2 1 3 5 5 C 1.55157 * 103.02064 * 218.66520 * 4 2 1 6 6 H 1.09001 * 111.04179 * 277.21775 * 5 4 2 7 7 N 1.46906 * 111.00459 * 153.37871 * 5 4 2 8 8 C 1.48537 * 110.99778 * 63.95860 * 7 5 4 9 9 C 1.54939 * 103.22456 * 159.71969 * 8 7 5 10 10 C 1.54592 * 102.92006 * 322.58424 * 9 8 7 11 11 C 1.47906 * 110.99832 * 181.35113 * 7 5 4 12 12 C 1.54913 * 101.58216 * 35.30878 * 5 4 2 13 13 N 1.47017 * 109.88243 * 121.09422 * 2 1 3 14 14 C 1.34777 * 125.64827 * 298.39792 * 13 2 1 15 15 O 1.21579 * 119.99978 * 359.71218 * 14 13 2 16 16 N 1.34784 * 119.99908 * 179.71491 * 14 13 2 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47011 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99997 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99976 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47195 * 89.99983 * 22 20 18 24 24 H 1.48499 * 109.47159 * 209.99893 * 22 20 18 25 25 H 1.48507 * 109.47229 * 330.00160 * 22 20 18 26 26 H 1.08998 * 109.47022 * 300.35903 * 1 2 3 27 27 H 1.09004 * 109.46937 * 60.36174 * 1 2 3 28 28 H 1.08996 * 109.47289 * 180.35732 * 1 2 3 29 29 H 1.08998 * 110.85532 * 100.19591 * 4 2 1 30 30 H 1.09007 * 110.51630 * 336.97333 * 4 2 1 31 31 H 1.08995 * 110.66222 * 278.15176 * 8 7 5 32 32 H 1.08998 * 110.66724 * 41.28558 * 8 7 5 33 33 H 1.09001 * 110.71932 * 204.22488 * 9 8 7 34 34 H 1.09002 * 110.72166 * 80.94201 * 9 8 7 35 35 H 1.09001 * 110.30685 * 263.04215 * 10 9 8 36 36 H 1.09002 * 110.31014 * 140.88093 * 10 9 8 37 37 H 1.09002 * 109.91508 * 333.50996 * 11 7 5 38 38 H 1.08995 * 109.91664 * 94.80308 * 11 7 5 39 39 H 1.08997 * 110.36961 * 204.15549 * 12 5 4 40 40 H 1.08996 * 110.37146 * 81.82697 * 12 5 4 41 41 H 0.96995 * 120.00015 * 359.72369 * 16 14 13 42 42 H 1.09005 * 109.47306 * 299.99972 * 17 16 14 43 43 H 1.09002 * 109.47518 * 60.00210 * 17 16 14 44 44 H 0.96998 * 119.99718 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2863 -1.5183 -0.6915 6 1 4.1674 -0.8774 -0.6579 7 7 3.5482 -2.7276 -1.4835 8 6 3.9160 -2.3799 -2.8800 9 6 4.6435 -3.6524 -3.3822 10 6 5.4310 -4.1153 -2.1350 11 6 4.6997 -3.4790 -0.9385 12 6 2.8099 -1.8826 0.7369 13 7 2.0300 -0.7140 1.1839 14 6 1.8073 -0.3620 2.4657 15 8 1.1458 0.6263 2.7185 16 7 2.3180 -1.1055 3.4672 17 6 2.0764 -0.7225 4.8604 18 6 2.7510 -1.7103 5.7771 19 1 3.3040 -2.5406 5.3633 20 6 2.6622 -1.5541 7.1441 21 7 1.9883 -0.5433 7.6481 22 14 3.4977 -2.7789 8.2804 23 1 4.8815 -2.3232 8.5678 24 1 2.7347 -2.8760 9.5506 25 1 3.5413 -4.1113 7.6260 26 1 -0.3633 0.5194 0.8867 27 1 -0.3633 0.5082 -0.8932 28 1 -0.3633 -1.0276 0.0064 29 1 2.3597 -0.0451 -2.0192 30 1 1.3053 -1.4407 -1.6196 31 1 3.0240 -2.1863 -3.4757 32 1 4.5865 -1.5208 -2.8987 33 1 5.3228 -3.4109 -4.1997 34 1 3.9245 -4.4123 -3.6884 35 1 6.4597 -3.7581 -2.1831 36 1 5.4104 -5.2023 -2.0565 37 1 5.3703 -2.8002 -0.4117 38 1 4.3482 -4.2575 -0.2615 39 1 3.6655 -2.0412 1.3933 40 1 2.1801 -2.7718 0.7115 41 1 2.8424 -1.8962 3.2655 42 1 2.4815 0.2736 5.0389 43 1 1.0040 -0.7189 5.0555 44 1 1.9262 -0.4332 8.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334245454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -26.133735 kcal Electronic energy + Delta-G solvation = -22663.148257 eV Core-core repulsion = 19422.066466 eV Total energy + Delta-G solvation = -3241.081791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21795 -38.83912 -36.89001 -34.14567 -32.54608 -32.45305 -31.14616 -29.18060 -28.67880 -26.95013 -25.65050 -23.14637 -22.40715 -21.40609 -20.75306 -20.38171 -18.96961 -17.81816 -16.84415 -16.17855 -15.99888 -15.51521 -14.89402 -14.61420 -14.20707 -14.04385 -13.91052 -13.49087 -13.25230 -13.12042 -12.66827 -12.63550 -12.30622 -12.04848 -11.90547 -11.70514 -11.65657 -11.58425 -11.42427 -10.98430 -10.95282 -10.92072 -10.86839 -10.81688 -10.62352 -10.26151 -9.33793 -9.29033 -8.70581 -8.69271 -8.32681 -7.67232 -6.12485 -4.18840 3.13097 3.26514 3.32691 3.35515 3.70512 3.99022 4.20809 4.34062 4.37094 4.60733 4.64058 4.67420 4.96076 4.99579 5.01123 5.17437 5.23423 5.23579 5.33525 5.39206 5.50999 5.53723 5.54603 5.61398 5.70052 5.71449 5.77470 5.81207 5.86511 5.92614 5.95504 6.26372 6.46392 6.59979 6.69031 6.84494 7.25569 7.56069 7.61149 7.63319 7.93602 8.07140 8.79965 8.95919 9.37711 9.52517 10.97837 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.004044 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.732028 B = 6922.429921 C = 8353.469563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.157 3.843 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.062 3.938 6 H 0.059 0.941 7 N -0.506 5.506 8 C 0.036 3.964 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.032 3.968 12 C 0.114 3.886 13 N -0.641 5.641 14 C 0.713 3.287 15 O -0.595 6.595 16 N -0.728 5.728 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -5.790 -23.084 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.048 4.048 6 H 0.077 0.923 7 N -0.231 5.231 8 C -0.092 4.092 9 C -0.162 4.162 10 C -0.170 4.170 11 C -0.096 4.096 12 C -0.010 4.010 13 N -0.382 5.382 14 C 0.415 3.585 15 O -0.474 6.474 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.289 -5.235 -22.514 23.509 hybrid contribution 1.490 -0.506 0.657 1.705 sum 5.779 -5.740 -21.857 23.325 Atomic orbital electron populations 1.22141 0.94941 1.02148 1.02681 1.21235 0.94554 0.95761 0.83265 0.91253 1.22772 0.97229 0.98852 0.96685 1.22959 0.97576 0.90752 0.93500 0.92329 1.64772 1.37361 1.19142 1.01806 1.23214 0.99319 0.96777 0.89887 1.22478 0.98949 0.97486 0.97260 1.22401 0.98923 1.01194 0.94441 1.22907 0.91331 0.98032 0.97337 1.22071 0.95533 0.89842 0.93542 1.47652 1.56878 1.29447 1.04183 1.15654 0.80575 0.83358 0.78928 1.90855 1.45445 1.28726 1.82331 1.45753 1.55725 1.29280 1.07253 1.18977 0.97005 0.96086 0.73301 1.21223 1.34156 1.11321 0.91217 0.92035 1.24940 0.95251 0.95778 0.98034 1.69982 1.40257 1.29303 1.12762 0.86419 0.79322 0.81148 0.80029 1.20506 1.21004 1.19766 0.90746 0.92362 0.92685 0.90565 0.89466 0.89874 0.93727 0.91169 0.90684 0.91589 0.90927 0.93456 0.89885 0.91268 0.90850 0.78232 0.95785 0.95740 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.11 37.16 0.34 -1.90 16 2 C 0.16 2.19 3.46 -66.95 -0.23 1.96 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.12 -1.20 5.46 -24.89 -0.14 -1.34 16 5 C 0.06 0.66 2.37 -65.56 -0.16 0.51 16 6 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 7 N -0.51 -4.82 5.15 -219.94 -1.13 -5.95 16 8 C 0.04 0.28 5.96 -1.89 -0.01 0.26 16 9 C -0.12 -0.82 7.06 -24.87 -0.18 -1.00 16 10 C -0.13 -0.93 6.93 -25.38 -0.18 -1.11 16 11 C 0.03 0.28 6.15 -2.76 -0.02 0.26 16 12 C 0.11 1.52 5.66 -2.52 -0.01 1.50 16 13 N -0.64 -10.73 3.06 -168.68 -0.52 -11.24 16 14 C 0.71 15.69 8.28 -86.91 -0.72 14.97 16 15 O -0.59 -15.37 15.39 5.30 0.08 -15.29 16 16 N -0.73 -16.50 5.51 -66.41 -0.37 -16.86 16 17 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 18 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.07 1.29 6.89 -51.93 -0.36 0.94 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.88 7.84 -51.93 -0.41 0.48 16 31 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.04 0.34 8.02 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.43 7.72 -51.93 -0.40 0.03 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.91 7.30 -51.93 -0.38 0.53 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.39 7.67 6.80 -40.82 -0.28 7.39 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -32.60 348.18 -10.40 -43.00 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.68 Total: 2.97 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -1.74 Total: 7.80 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -1.28 Total: -59.83 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.60 -10.40 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.862 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds