Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 110.41805 * 2 1 4 4 C 1.55127 * 110.34505 * 122.45110 * 2 1 3 5 5 C 1.55156 * 101.49007 * 156.05833 * 4 2 1 6 6 H 1.08999 * 110.87109 * 82.76551 * 5 4 2 7 7 N 1.46894 * 110.72028 * 205.96497 * 5 4 2 8 8 C 1.48541 * 110.99892 * 173.33216 * 7 5 4 9 9 C 1.54941 * 103.22503 * 159.72472 * 8 7 5 10 10 C 1.54590 * 102.91910 * 322.58205 * 9 8 7 11 11 C 1.47900 * 111.00451 * 290.72742 * 7 5 4 12 12 C 1.54324 * 102.94213 * 324.32983 * 5 4 2 13 13 N 1.47029 * 107.27063 * 22.19110 * 12 5 4 14 14 C 1.34769 * 125.64878 * 181.01876 * 13 12 5 15 15 O 1.21592 * 120.00204 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00279 * 0.30698 * 14 13 12 17 17 C 1.46498 * 120.00430 * 179.72229 * 16 14 13 18 18 C 1.50701 * 109.47199 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00241 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00029 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99727 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47318 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46889 * 119.99817 * 22 20 18 25 25 H 1.48502 * 109.46898 * 239.99514 * 22 20 18 26 26 H 1.09004 * 109.46854 * 180.83576 * 1 2 3 27 27 H 1.09000 * 109.47117 * 300.83515 * 1 2 3 28 28 H 1.08995 * 109.47134 * 60.83766 * 1 2 3 29 29 H 1.08996 * 111.19428 * 37.95204 * 4 2 1 30 30 H 1.09003 * 110.90196 * 274.03942 * 4 2 1 31 31 H 1.08998 * 110.66432 * 278.15725 * 8 7 5 32 32 H 1.08993 * 110.66583 * 41.28588 * 8 7 5 33 33 H 1.09007 * 110.71690 * 204.22544 * 9 8 7 34 34 H 1.08997 * 110.87986 * 81.01922 * 9 8 7 35 35 H 1.09003 * 110.31132 * 263.04270 * 10 9 8 36 36 H 1.09009 * 110.39022 * 140.91960 * 10 9 8 37 37 H 1.08996 * 109.91259 * 333.51127 * 11 7 5 38 38 H 1.09001 * 109.91551 * 94.60607 * 11 7 5 39 39 H 1.08995 * 109.88119 * 262.77946 * 12 5 4 40 40 H 1.08998 * 110.01260 * 141.67736 * 12 5 4 41 41 H 0.97003 * 119.99926 * 359.71698 * 16 14 13 42 42 H 1.08999 * 109.46971 * 299.99774 * 17 16 14 43 43 H 1.08993 * 109.47220 * 59.99499 * 17 16 14 44 44 H 0.97001 * 119.99721 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7805 1.2274 5 6 3.4797 -1.1974 0.7331 6 1 4.1953 -0.3872 0.8728 7 7 3.9333 -2.4132 1.4215 8 6 5.2083 -2.9085 0.8424 9 6 5.7825 -3.8074 1.9663 10 6 5.3997 -3.0397 3.2524 11 6 4.2170 -2.1406 2.8472 12 6 3.2525 -1.4725 -0.7683 13 7 2.0430 -0.7384 -1.1684 14 6 1.4972 -0.7361 -2.4006 15 8 0.4912 -0.0890 -2.6188 16 7 2.0632 -1.4556 -3.3898 17 6 1.4665 -1.4580 -4.7277 18 6 2.2854 -2.3329 -5.6415 19 1 3.1630 -2.8364 -5.2635 20 6 1.9151 -2.4897 -6.9603 21 7 0.8467 -1.8761 -7.4206 22 14 2.9298 -3.5747 -8.0927 23 1 4.0724 -4.1474 -7.3368 24 1 2.0806 -4.6748 -8.6160 25 1 3.4432 -2.7638 -9.2260 26 1 -0.3633 -1.0276 0.0150 27 1 -0.3633 0.5267 0.8824 28 1 -0.3633 0.5007 -0.8974 29 1 1.4550 -1.6556 1.4389 30 1 2.1372 -0.1323 2.1012 31 1 5.0204 -3.4921 -0.0587 32 1 5.8827 -2.0788 0.6311 33 1 6.8654 -3.8931 1.8761 34 1 5.3165 -4.7926 1.9519 35 1 6.2376 -2.4317 3.5936 36 1 5.0953 -3.7360 4.0339 37 1 4.4853 -1.0924 2.9786 38 1 3.3418 -2.3783 3.4520 39 1 3.1089 -2.5405 -0.9318 40 1 4.1075 -1.1207 -1.3456 41 1 2.8658 -1.9719 -3.2158 42 1 0.4486 -1.8438 -4.6708 43 1 1.4482 -0.4410 -5.1192 44 1 0.5859 -1.9867 -8.3483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334245455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -23.418015 kcal Electronic energy + Delta-G solvation = -22710.212949 eV Core-core repulsion = 19469.248920 eV Total energy + Delta-G solvation = -3240.964029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22919 -38.85207 -36.81274 -34.17185 -32.54404 -32.45519 -31.10518 -29.18061 -28.67566 -26.94019 -25.53371 -23.17158 -22.37949 -21.27438 -20.94638 -20.32489 -19.05744 -17.60123 -16.88416 -16.15987 -15.94353 -15.60859 -14.97808 -14.54714 -14.24483 -14.08418 -13.86495 -13.47051 -13.21200 -12.99409 -12.84243 -12.54540 -12.17404 -12.01116 -11.86467 -11.70385 -11.61289 -11.60137 -11.35514 -11.04969 -10.96625 -10.88613 -10.87613 -10.82321 -10.67546 -10.24162 -9.31252 -9.07271 -8.69386 -8.68101 -8.30044 -7.66300 -6.12057 -4.18151 3.15913 3.26229 3.33385 3.36777 3.70380 3.99680 4.21627 4.34654 4.38037 4.55162 4.64323 4.67632 4.98449 5.00941 5.06406 5.17767 5.24092 5.24386 5.35323 5.37559 5.50946 5.55859 5.56699 5.66435 5.71088 5.72127 5.74414 5.82865 5.91536 5.92847 5.99704 6.36365 6.50531 6.61278 6.84177 6.85365 7.26920 7.58127 7.62075 7.65443 7.94548 8.08142 8.81218 8.97219 9.39066 9.53823 10.98304 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004131 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.868744 B = 6776.300328 C = 8257.603445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.066 0.934 4 C -0.118 4.118 5 C 0.065 3.935 6 H 0.058 0.942 7 N -0.507 5.507 8 C 0.030 3.970 9 C -0.123 4.123 10 C -0.132 4.132 11 C 0.038 3.962 12 C 0.112 3.888 13 N -0.640 5.640 14 C 0.714 3.286 15 O -0.593 6.593 16 N -0.727 5.727 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.385 0.615 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -0.791 22.125 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.084 0.916 4 C -0.157 4.157 5 C -0.044 4.044 6 H 0.075 0.925 7 N -0.232 5.232 8 C -0.098 4.098 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.090 4.090 12 C -0.013 4.013 13 N -0.382 5.382 14 C 0.416 3.584 15 O -0.472 6.472 16 N -0.379 5.379 17 C 0.146 3.854 18 C -0.578 4.578 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.217 0.783 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.280 -0.667 21.576 23.119 hybrid contribution 1.632 -0.196 -0.518 1.723 sum 9.912 -0.863 21.057 23.289 Atomic orbital electron populations 1.22159 0.93847 1.02686 1.03328 1.21632 0.95403 0.94524 0.83274 0.91586 1.22960 0.95038 1.00663 0.97000 1.22805 0.96983 0.91028 0.93617 0.92452 1.64825 1.28303 1.27989 1.02034 1.23291 0.89864 0.98035 0.98563 1.22468 1.00457 0.99290 0.93916 1.22402 0.97599 0.98666 0.98303 1.22831 0.98282 0.98089 0.89829 1.21829 0.88226 0.97671 0.93536 1.47633 1.29118 1.52431 1.08979 1.15656 0.82947 0.80943 0.78873 1.90802 1.26426 1.48619 1.81399 1.45754 1.30842 1.49806 1.11536 1.18976 0.93895 0.97380 0.75148 1.21262 1.11836 1.29685 0.95037 0.91990 1.24942 0.95235 0.95911 0.97939 1.69994 1.24293 1.42229 1.15791 0.86368 0.79969 0.80104 0.80496 1.19678 1.20803 1.20838 0.92738 0.92871 0.88915 0.89437 0.90549 0.89483 0.93547 0.91091 0.90607 0.91647 0.91022 0.93779 0.90245 0.90772 0.92118 0.78265 0.95736 0.95776 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.71 37.16 0.32 -2.09 16 2 C 0.16 2.18 3.78 -66.30 -0.25 1.93 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.12 -1.27 5.68 -24.46 -0.14 -1.41 16 5 C 0.06 0.69 2.34 -65.88 -0.15 0.54 16 6 H 0.06 0.58 7.97 -51.93 -0.41 0.16 16 7 N -0.51 -4.98 5.07 -220.32 -1.12 -6.10 16 8 C 0.03 0.26 5.79 -1.89 -0.01 0.25 16 9 C -0.12 -0.90 7.06 -24.87 -0.18 -1.08 16 10 C -0.13 -0.89 6.93 -25.38 -0.18 -1.06 16 11 C 0.04 0.30 6.23 -2.76 -0.02 0.28 16 12 C 0.11 1.48 5.05 -3.06 -0.02 1.47 16 13 N -0.64 -10.75 3.24 -168.59 -0.55 -11.30 16 14 C 0.71 15.63 8.27 -86.93 -0.72 14.91 16 15 O -0.59 -15.04 13.99 5.28 0.07 -14.97 16 16 N -0.73 -16.47 5.51 -66.42 -0.37 -16.84 16 17 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 18 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.71 5.88 -51.93 -0.31 1.41 16 29 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 32 H 0.05 0.40 8.02 -51.93 -0.42 -0.02 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.04 0.33 7.66 -51.93 -0.40 -0.06 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.39 7.70 7.31 -40.82 -0.30 7.40 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -32.32 345.99 -10.47 -42.79 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.66 Total: 3.41 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.78 Total: 7.43 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -1.29 Total: -59.99 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.07 Total: -14.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.32 -10.47 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.374 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds