Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.87702 * 2 1 4 4 C 1.54334 * 110.01162 * 121.09545 * 2 1 3 5 5 C 1.55159 * 102.93828 * 97.29764 * 4 2 1 6 6 H 1.09002 * 111.00187 * 277.38900 * 5 4 2 7 7 N 1.46898 * 110.99976 * 153.57782 * 5 4 2 8 8 C 1.48534 * 111.00095 * 57.60384 * 7 5 4 9 9 C 1.54943 * 103.22801 * 159.72127 * 8 7 5 10 10 C 1.54598 * 102.91752 * 322.58365 * 9 8 7 11 11 C 1.47907 * 111.00004 * 174.99764 * 7 5 4 12 12 C 1.54691 * 101.68108 * 35.33868 * 5 4 2 13 13 N 1.47023 * 109.88427 * 238.98090 * 2 1 3 14 14 C 1.34775 * 125.64494 * 59.33536 * 13 2 1 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 2 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 2 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00502 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47135 * 90.00187 * 22 20 18 24 24 H 1.48500 * 109.46751 * 210.00163 * 22 20 18 25 25 H 1.48503 * 109.47215 * 329.99996 * 22 20 18 26 26 H 1.09003 * 109.47153 * 179.56365 * 1 2 3 27 27 H 1.09000 * 109.47395 * 299.55960 * 1 2 3 28 28 H 1.08999 * 109.47112 * 59.56216 * 1 2 3 29 29 H 1.08997 * 110.71763 * 215.66076 * 4 2 1 30 30 H 1.08997 * 110.71990 * 338.75920 * 4 2 1 31 31 H 1.08998 * 110.66827 * 278.15564 * 8 7 5 32 32 H 1.09001 * 110.67038 * 41.28626 * 8 7 5 33 33 H 1.08997 * 110.72030 * 204.23021 * 9 8 7 34 34 H 1.08995 * 110.87731 * 81.01257 * 9 8 7 35 35 H 1.09000 * 110.31076 * 263.04346 * 10 9 8 36 36 H 1.08998 * 110.39188 * 140.91880 * 10 9 8 37 37 H 1.08997 * 109.91349 * 333.51189 * 11 7 5 38 38 H 1.09003 * 109.91358 * 94.60169 * 11 7 5 39 39 H 1.08995 * 110.39310 * 204.36358 * 12 5 4 40 40 H 1.08994 * 110.23513 * 82.10511 * 12 5 4 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 42 42 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 43 43 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 44 44 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2418 5 6 2.3574 -2.1680 0.6903 6 1 1.4521 -2.7743 0.6599 7 7 3.4046 -2.8296 1.4801 8 6 3.0164 -2.9178 2.9111 9 6 3.9208 -4.0524 3.4546 10 6 3.9642 -5.0536 2.2774 11 6 3.6063 -4.2241 1.0304 12 6 2.8554 -1.8499 -0.7393 13 7 2.0300 -0.7125 -1.1849 14 6 1.7718 -0.3836 -2.4661 15 8 1.0697 0.5766 -2.7177 16 7 2.2921 -1.1192 -3.4685 17 6 2.0065 -0.7654 -4.8612 18 6 2.6961 -1.7417 -5.7790 19 1 3.2882 -2.5451 -5.3663 20 6 2.5719 -1.6086 -7.1457 21 7 1.8521 -0.6294 -7.6484 22 14 3.4273 -2.8183 -8.2834 23 1 2.5212 -3.9613 -8.5621 24 1 3.7738 -2.1392 -9.5578 25 1 4.6670 -3.3161 -7.6349 26 1 -0.3633 -1.0277 -0.0078 27 1 -0.3634 0.5070 0.8939 28 1 -0.3633 0.5206 -0.8860 29 1 2.9683 -0.2807 1.6163 30 1 1.2972 -0.7878 2.0213 31 1 3.2255 -1.9796 3.4250 32 1 1.9640 -3.1847 3.0085 33 1 3.4745 -4.5125 4.3361 34 1 4.9196 -3.6786 3.6801 35 1 3.2313 -5.8463 2.4277 36 1 4.9633 -5.4774 2.1759 37 1 2.6893 -4.6057 0.5813 38 1 4.4199 -4.2667 0.3063 39 1 2.7039 -2.7080 -1.3940 40 1 3.9083 -1.5691 -0.7179 41 1 2.8519 -1.8855 -3.2678 42 1 0.9306 -0.8035 -5.0325 43 1 2.3710 0.2419 -5.0622 44 1 1.7645 -0.5361 -8.6099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334245457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -25.689705 kcal Electronic energy + Delta-G solvation = -22686.919321 eV Core-core repulsion = 19445.856784 eV Total energy + Delta-G solvation = -3241.062537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24817 -38.84097 -36.90554 -34.14388 -32.55085 -32.41396 -31.16227 -29.18634 -28.60705 -26.94674 -25.70313 -23.22530 -22.40407 -21.51590 -20.80375 -20.18326 -19.02838 -17.89543 -16.71087 -16.24804 -15.82823 -15.40394 -14.99673 -14.72526 -14.23612 -14.17594 -13.76215 -13.44888 -13.26050 -13.06516 -12.80922 -12.58773 -12.36713 -12.08987 -11.91885 -11.74567 -11.61533 -11.58584 -11.42623 -11.01972 -10.94346 -10.91482 -10.85497 -10.84375 -10.56703 -10.25815 -9.33515 -9.28221 -8.70106 -8.69064 -8.32596 -7.67131 -6.12286 -4.18632 3.13045 3.26702 3.32860 3.35736 3.71028 3.98074 4.21473 4.34139 4.37130 4.58381 4.64667 4.66905 4.94516 5.00510 5.01754 5.19897 5.23300 5.23760 5.30337 5.39198 5.50722 5.51073 5.54033 5.62335 5.69336 5.71673 5.77503 5.77992 5.88080 5.90823 5.97544 6.20544 6.45248 6.60460 6.69212 6.84669 7.25712 7.56328 7.61265 7.63616 7.93756 8.07354 8.80214 8.96159 9.37933 9.52736 10.98024 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.003998 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.686459 B = 7002.206798 C = 8366.008698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.072 0.928 4 C -0.119 4.119 5 C 0.063 3.937 6 H 0.059 0.941 7 N -0.506 5.506 8 C 0.036 3.964 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.032 3.968 12 C 0.115 3.885 13 N -0.640 5.640 14 C 0.713 3.287 15 O -0.595 6.595 16 N -0.728 5.728 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -7.286 23.260 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.046 4.046 6 H 0.077 0.923 7 N -0.231 5.231 8 C -0.091 4.091 9 C -0.162 4.162 10 C -0.169 4.169 11 C -0.096 4.096 12 C -0.010 4.010 13 N -0.381 5.381 14 C 0.415 3.585 15 O -0.474 6.474 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.218 0.782 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.837 -6.135 22.641 23.628 hybrid contribution -0.082 -1.546 -0.584 1.654 sum 2.754 -7.680 22.058 23.518 Atomic orbital electron populations 1.22178 0.95158 1.01919 1.02861 1.21222 0.94312 0.96004 0.83266 0.91014 1.22772 1.01790 0.94318 0.96807 1.22906 0.92735 0.95360 0.93637 0.92334 1.64749 1.40524 1.15653 1.02189 1.23203 0.97535 0.99422 0.88979 1.22474 1.00554 0.95695 0.97456 1.22396 1.02169 0.97881 0.94490 1.22916 1.01272 0.87680 0.97708 1.22023 0.95786 0.89592 0.93549 1.47644 1.54733 1.31609 1.04155 1.15650 0.80805 0.83122 0.78921 1.90852 1.43660 1.30493 1.82366 1.45753 1.53236 1.31760 1.07249 1.18977 0.96718 0.96354 0.73319 1.21224 1.32133 1.13334 0.91225 0.92029 1.24939 0.95273 0.95752 0.98036 1.69980 1.38980 1.30545 1.12805 0.86421 0.79724 0.80753 0.80031 1.20507 1.21005 1.19760 0.93065 0.92392 0.90463 0.89712 0.90346 0.89849 0.93723 0.91189 0.90674 0.91615 0.90928 0.93532 0.89896 0.91315 0.90757 0.78213 0.95801 0.95724 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.07 37.15 0.34 -1.91 16 2 C 0.16 2.18 3.49 -66.95 -0.23 1.95 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.12 -1.21 5.18 -24.89 -0.13 -1.34 16 5 C 0.06 0.68 2.44 -65.68 -0.16 0.52 16 6 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 7 N -0.51 -4.82 5.15 -220.08 -1.13 -5.96 16 8 C 0.04 0.28 5.78 -1.89 -0.01 0.27 16 9 C -0.12 -0.82 7.06 -24.87 -0.18 -0.99 16 10 C -0.13 -0.92 6.93 -25.38 -0.18 -1.10 16 11 C 0.03 0.28 6.35 -2.75 -0.02 0.26 16 12 C 0.11 1.53 5.87 -2.64 -0.02 1.51 16 13 N -0.64 -10.72 3.08 -168.83 -0.52 -11.24 16 14 C 0.71 15.68 8.27 -86.92 -0.72 14.97 16 15 O -0.59 -15.33 15.22 5.29 0.08 -15.25 16 16 N -0.73 -16.50 5.51 -66.41 -0.37 -16.87 16 17 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 18 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.34 6.73 -51.93 -0.35 0.99 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 32 H 0.04 0.34 8.02 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.42 7.62 -51.93 -0.40 0.03 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.39 7.69 6.81 -40.82 -0.28 7.41 16 42 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -32.58 347.55 -10.39 -42.97 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.66 Total: 2.98 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -1.75 Total: 7.81 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.28 Total: -59.85 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.58 -10.39 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.276 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds