Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00260 * 2 1 4 4 C 1.54330 * 109.88036 * 238.90469 * 2 1 3 5 5 C 1.55152 * 102.94327 * 262.77604 * 4 2 1 6 6 H 1.09001 * 111.00418 * 82.60712 * 5 4 2 7 7 N 1.46895 * 111.00574 * 206.42548 * 5 4 2 8 8 C 1.48540 * 111.00340 * 177.39526 * 7 5 4 9 9 C 1.54938 * 103.22845 * 159.71984 * 8 7 5 10 10 C 1.54602 * 102.92190 * 322.58182 * 9 8 7 11 11 C 1.47908 * 110.99731 * 294.78651 * 7 5 4 12 12 C 1.55124 * 101.48761 * 324.33428 * 5 4 2 13 13 N 1.47024 * 109.88281 * 121.10078 * 2 1 3 14 14 C 1.34775 * 125.64271 * 300.43589 * 13 2 1 15 15 O 1.21581 * 120.00281 * 0.02562 * 14 13 2 16 16 N 1.34777 * 119.99365 * 180.02562 * 14 13 2 17 17 C 1.46504 * 119.99769 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47119 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99800 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99389 * 180.27637 * 20 18 17 22 22 Si 1.86793 * 120.00195 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46912 * 89.99748 * 22 20 18 24 24 H 1.48498 * 109.47276 * 209.99859 * 22 20 18 25 25 H 1.48504 * 109.47198 * 330.00052 * 22 20 18 26 26 H 1.08998 * 109.46897 * 300.35841 * 1 2 3 27 27 H 1.08998 * 109.47263 * 60.35213 * 1 2 3 28 28 H 1.08999 * 109.47509 * 180.35644 * 1 2 3 29 29 H 1.08998 * 110.71910 * 21.14258 * 4 2 1 30 30 H 1.08994 * 110.71942 * 144.41305 * 4 2 1 31 31 H 1.08996 * 110.66095 * 278.15659 * 8 7 5 32 32 H 1.09003 * 110.66199 * 41.28321 * 8 7 5 33 33 H 1.08995 * 110.72226 * 204.22991 * 9 8 7 34 34 H 1.08997 * 110.72523 * 80.93915 * 9 8 7 35 35 H 1.08997 * 110.30863 * 263.04361 * 10 9 8 36 36 H 1.08998 * 110.30640 * 140.87411 * 10 9 8 37 37 H 1.08997 * 109.91976 * 333.50792 * 11 7 5 38 38 H 1.09000 * 109.91278 * 94.60636 * 11 7 5 39 39 H 1.08998 * 110.49964 * 278.45244 * 12 5 4 40 40 H 1.09002 * 110.34716 * 156.05835 * 12 5 4 41 41 H 0.97000 * 120.00470 * 359.97438 * 16 14 13 42 42 H 1.08996 * 109.46992 * 59.99847 * 17 16 14 43 43 H 1.09002 * 109.46996 * 299.99812 * 17 16 14 44 44 H 0.97004 * 119.99249 * 179.72152 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 2.3518 -2.1695 -0.6925 6 1 1.4452 -2.7738 -0.6611 7 7 3.3964 -2.8330 -1.4839 8 6 3.7249 -4.1673 -0.9198 9 6 4.3938 -4.9004 -2.1096 10 6 3.5749 -4.4067 -3.3244 11 6 2.9354 -3.0825 -2.8670 12 6 2.8612 -1.8467 0.7367 13 7 2.0300 -0.7142 1.1839 14 6 1.7754 -0.3845 2.4656 15 8 1.0768 0.5779 2.7186 16 7 2.2951 -1.1219 3.4670 17 6 2.0179 -0.7640 4.8603 18 6 2.7103 -1.7396 5.7768 19 1 3.2976 -2.5458 5.3628 20 6 2.5938 -1.6028 7.1439 21 7 3.2025 -2.4510 7.9437 22 14 1.5785 -0.2079 7.8599 23 1 0.1739 -0.6573 8.0347 24 1 2.1393 0.1873 9.1768 25 1 1.6149 0.9551 6.9372 26 1 -0.3633 0.5194 0.8867 27 1 -0.3634 0.5083 -0.8931 28 1 -0.3634 -1.0276 0.0064 29 1 1.2918 -0.7890 -2.0201 30 1 2.9656 -0.2832 -1.6183 31 1 4.4208 -4.0718 -0.0864 32 1 2.8187 -4.6868 -0.6081 33 1 4.3035 -5.9807 -1.9970 34 1 5.4394 -4.6074 -2.2046 35 1 2.8020 -5.1317 -3.5795 36 1 4.2305 -4.2352 -4.1781 37 1 1.8491 -3.1686 -2.8865 38 1 3.2550 -2.2683 -3.5174 39 1 3.9123 -1.5590 0.7114 40 1 2.7177 -2.7050 1.3931 41 1 2.8522 -1.8899 3.2652 42 1 0.9431 -0.7995 5.0376 43 1 2.3855 0.2432 5.0567 44 1 3.1238 -2.3523 8.9055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334245458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -22.169376 kcal Electronic energy + Delta-G solvation = -22740.152806 eV Core-core repulsion = 19499.242923 eV Total energy + Delta-G solvation = -3240.909884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31037 -38.91007 -37.00535 -34.27115 -32.58354 -32.42733 -31.32602 -29.18703 -28.67309 -27.53808 -25.74083 -23.15759 -22.25760 -21.27431 -21.01825 -20.14991 -19.19486 -17.96059 -16.68989 -16.49218 -16.11242 -15.43497 -15.07127 -14.65361 -14.29557 -14.19267 -13.78018 -13.47560 -13.27225 -13.11981 -13.05435 -12.56945 -12.49093 -12.28262 -12.17179 -11.86196 -11.80668 -11.61984 -11.40031 -11.06899 -10.96207 -10.90307 -10.83336 -10.73803 -10.64548 -9.92928 -9.49581 -9.40032 -8.74589 -8.70965 -8.46828 -7.91326 -6.18273 -4.19830 3.03143 3.30077 3.36791 3.46164 3.67630 3.83676 4.18943 4.36371 4.37097 4.52645 4.62861 4.65320 4.85953 4.92774 5.01932 5.15905 5.17525 5.22365 5.27412 5.38335 5.44467 5.50622 5.54912 5.58519 5.68108 5.71082 5.72002 5.78717 5.82333 5.90527 5.94755 6.13931 6.37035 6.58015 6.59815 6.81300 6.86518 7.15297 7.31761 7.44850 7.64095 8.29635 8.71218 8.83290 9.25036 9.43951 10.93751 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.003997 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.993783 B = 7003.266958 C = 8162.443184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.072 0.928 4 C -0.117 4.117 5 C 0.063 3.937 6 H 0.059 0.941 7 N -0.507 5.507 8 C 0.030 3.970 9 C -0.123 4.123 10 C -0.132 4.132 11 C 0.037 3.963 12 C 0.113 3.887 13 N -0.639 5.639 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.721 5.721 17 C 0.239 3.761 18 C -0.541 4.541 19 H 0.078 0.922 20 C 0.078 3.922 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.391 0.609 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -3.232 -23.922 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.046 4.046 6 H 0.077 0.923 7 N -0.231 5.231 8 C -0.097 4.097 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.090 4.090 12 C -0.011 4.011 13 N -0.379 5.379 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.374 5.374 17 C 0.116 3.884 18 C -0.579 4.579 19 H 0.096 0.904 20 C -0.126 4.126 21 N -0.531 5.531 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.036 0.964 43 H 0.041 0.959 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.099 -2.182 -23.367 23.469 hybrid contribution -0.948 -0.362 0.434 1.103 sum -1.046 -2.544 -22.934 23.098 Atomic orbital electron populations 1.22176 0.95118 1.01966 1.02845 1.21252 0.94336 0.95992 0.83235 0.90949 1.22755 1.01859 0.94303 0.96649 1.22982 0.92883 0.95416 0.93353 0.92279 1.64777 1.37339 1.19363 1.01653 1.23299 0.99738 0.88636 0.98060 1.22475 1.00058 0.99625 0.93978 1.22405 0.99483 0.96454 0.98651 1.22826 0.98024 0.97664 0.90528 1.22162 0.95672 0.89636 0.93665 1.47592 1.54408 1.31877 1.04065 1.15605 0.80688 0.82977 0.79037 1.90843 1.43990 1.30398 1.82464 1.45434 1.53719 1.31796 1.06412 1.19361 0.96227 0.96648 0.76166 1.21090 1.32548 1.13491 0.90783 0.90368 1.24775 0.95109 0.96029 0.96688 1.69886 1.42823 1.36465 1.03934 0.86812 0.80673 0.83309 0.78873 1.19883 1.20944 1.18403 0.90580 0.92302 0.92986 0.90359 0.89619 0.89445 0.93481 0.91030 0.90612 0.91619 0.91018 0.93770 0.90246 0.90576 0.91111 0.77521 0.96418 0.95887 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.06 37.16 0.34 -1.80 16 2 C 0.16 2.09 3.49 -66.95 -0.23 1.85 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.12 -1.17 5.54 -24.90 -0.14 -1.30 16 5 C 0.06 0.66 2.37 -65.45 -0.15 0.51 16 6 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 7 N -0.51 -4.76 5.14 -219.80 -1.13 -5.89 16 8 C 0.03 0.26 5.99 -1.89 -0.01 0.25 16 9 C -0.12 -0.89 7.06 -24.87 -0.18 -1.06 16 10 C -0.13 -0.87 6.93 -25.37 -0.18 -1.05 16 11 C 0.04 0.29 6.11 -2.75 -0.02 0.27 16 12 C 0.11 1.45 5.62 -2.41 -0.01 1.44 16 13 N -0.64 -10.27 3.08 -168.55 -0.52 -10.79 16 14 C 0.72 14.98 8.27 -86.92 -0.72 14.26 16 15 O -0.60 -14.55 15.24 5.29 0.08 -14.47 16 16 N -0.72 -15.69 5.51 -66.41 -0.37 -16.06 16 17 C 0.24 6.10 4.50 -5.19 -0.02 6.08 16 18 C -0.54 -15.16 9.83 -34.44 -0.34 -15.50 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 21 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 22 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 26 H 0.08 1.25 6.74 -51.93 -0.35 0.90 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.05 0.42 8.01 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.04 0.34 7.74 -51.93 -0.40 -0.06 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.91 7.29 -51.93 -0.38 0.53 16 41 H 0.39 7.66 6.79 -40.82 -0.28 7.38 16 42 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 43 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.41 344.30 -10.05 -42.46 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.64 Total: 2.35 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.76 Total: 6.08 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -1.24 Total: -58.76 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.41 -10.05 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334245458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds