Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46851 * 111.00014 * 2 1 4 4 C 1.53099 * 109.48433 * 173.83669 * 3 2 1 5 5 C 1.52849 * 109.26934 * 58.66705 * 4 3 2 6 6 C 1.54073 * 109.61944 * 182.51876 * 5 4 3 7 7 C 1.55213 * 102.87234 * 262.39165 * 6 5 4 8 8 C 1.54922 * 101.61424 * 324.71349 * 7 6 5 9 9 N 1.46771 * 110.04518 * 64.43728 * 5 4 3 10 10 C 1.34778 * 125.70263 * 300.51893 * 9 5 4 11 11 O 1.21590 * 120.00296 * 357.15428 * 10 9 5 12 12 N 1.34773 * 119.99874 * 177.14682 * 10 9 5 13 13 C 1.46507 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47185 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99629 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00100 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99625 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47533 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47397 * 120.00406 * 18 16 14 21 21 H 1.48502 * 109.47208 * 240.00274 * 18 16 14 22 22 C 1.52846 * 109.92169 * 303.08059 * 5 4 3 23 23 C 1.46842 * 111.00105 * 235.67905 * 2 1 3 24 24 H 1.09002 * 109.46928 * 60.00249 * 1 2 3 25 25 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47221 * 300.00171 * 1 2 3 27 27 H 1.08999 * 109.46922 * 53.82870 * 3 2 1 28 28 H 1.09001 * 109.46520 * 293.84064 * 3 2 1 29 29 H 1.08993 * 109.50325 * 298.72485 * 4 3 2 30 30 H 1.08996 * 109.50285 * 178.60016 * 4 3 2 31 31 H 1.08998 * 110.72643 * 144.04724 * 6 5 4 32 32 H 1.08997 * 110.73205 * 20.73957 * 6 5 4 33 33 H 1.09005 * 110.99729 * 206.63239 * 7 6 5 34 34 H 1.09007 * 110.99798 * 82.79931 * 7 6 5 35 35 H 1.09004 * 110.36420 * 155.71449 * 8 7 6 36 36 H 1.08997 * 110.36789 * 278.03515 * 8 7 6 37 37 H 0.97000 * 120.00517 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47087 * 300.00627 * 13 12 10 39 39 H 1.08996 * 109.46984 * 60.00349 * 13 12 10 40 40 H 0.97000 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.50221 * 176.85478 * 22 5 4 42 42 H 1.08998 * 109.50360 * 296.97261 * 22 5 4 43 43 H 1.08991 * 109.47020 * 306.16862 * 23 2 1 44 44 H 1.08997 * 109.46738 * 66.15875 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5179 1.3335 0.1550 5 6 4.1219 0.5242 -0.9924 6 6 5.6488 0.4279 -0.8099 7 6 6.1793 1.5571 -1.7332 8 6 5.1676 1.5029 -2.9052 9 7 3.8709 1.1996 -2.2711 10 6 2.6583 1.4937 -2.7805 11 8 1.6517 1.1491 -2.1920 12 7 2.5614 2.1700 -3.9423 13 6 1.2433 2.4892 -4.4963 14 6 1.4114 3.2426 -5.7906 15 1 2.4011 3.4613 -6.1634 16 6 0.3017 3.6517 -6.4993 17 7 -0.9034 3.3849 -6.0455 18 14 0.5102 4.5849 -8.1039 19 1 1.9568 4.7559 -8.3929 20 1 -0.1276 3.8220 -9.2068 21 1 -0.1328 5.9185 -7.9882 22 6 3.5179 -0.8797 -1.0140 23 6 1.9952 -0.7729 -1.1322 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.5592 1.9275 0.8296 28 1 1.7376 1.8589 -0.9400 29 1 3.7756 0.8660 1.1052 30 1 3.9114 2.3496 0.1301 31 1 6.0161 -0.5442 -1.1390 32 1 5.9259 0.6153 0.2274 33 1 7.1894 1.3369 -2.0787 34 1 6.1424 2.5231 -1.2295 35 1 5.1248 2.4658 -3.4142 36 1 5.4408 0.7142 -3.6060 37 1 3.3644 2.4447 -4.4120 38 1 0.6940 1.5663 -4.6822 39 1 0.6902 3.1044 -3.7866 40 1 -1.6841 3.6731 -6.5439 41 1 3.9113 -1.4321 -1.8673 42 1 3.7757 -1.4010 -0.0921 43 1 1.5593 -1.7718 -1.1241 44 1 1.7376 -0.2718 -2.0652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334659239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = 55.087508 kcal Electronic energy + Delta-G solvation = -24267.315721 eV Core-core repulsion = 21029.755947 eV Total energy + Delta-G solvation = -3237.559774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24229 -37.78152 -36.90277 -34.21620 -32.63736 -31.82792 -31.22940 -30.44480 -27.16976 -27.01740 -24.30471 -23.12437 -22.86239 -22.07843 -20.71751 -20.50692 -18.37656 -17.36417 -16.73699 -16.31701 -15.85819 -15.17059 -14.95147 -14.69938 -13.96754 -13.68506 -13.56858 -13.34800 -13.27119 -12.85865 -12.57431 -12.20632 -12.14835 -11.98970 -11.96143 -11.77645 -11.42271 -11.35657 -11.03973 -11.01180 -10.80360 -10.74963 -10.29065 -10.26917 -10.05402 -9.86540 -9.41048 -8.97392 -8.70336 -7.84059 -7.45897 -7.15117 -6.20502 -4.27071 3.11563 3.20963 3.28863 3.31709 3.55316 4.27394 4.48165 4.53455 4.74559 4.82265 4.92415 5.12383 5.16255 5.23375 5.31782 5.60670 5.61488 5.64724 5.74940 5.81242 5.90030 5.93293 6.00501 6.06340 6.10079 6.14632 6.19877 6.32101 6.45891 6.50483 6.57628 6.66526 6.96069 7.18530 7.39093 7.49724 7.52482 7.57725 7.83813 7.84271 7.89526 7.97826 8.69566 8.81214 9.23658 9.41497 10.89636 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.005378 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.361519 B = 5205.231560 C = 6218.352280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.526 5.526 3 C -0.012 4.012 4 C -0.108 4.108 5 C 0.184 3.816 6 C -0.123 4.123 7 C -0.131 4.131 8 C 0.102 3.898 9 N -0.629 5.629 10 C 0.689 3.311 11 O -0.536 6.536 12 N -0.722 5.722 13 C 0.266 3.734 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.109 4.109 23 C -0.014 4.014 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.386 0.614 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -4.972 9.180 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.250 5.250 3 C -0.138 4.138 4 C -0.147 4.147 5 C 0.098 3.902 6 C -0.162 4.162 7 C -0.169 4.169 8 C -0.022 4.022 9 N -0.367 5.367 10 C 0.396 3.604 11 O -0.422 6.422 12 N -0.372 5.372 13 C 0.145 3.855 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.148 4.148 23 C -0.140 4.140 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.219 0.781 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.253 -5.366 9.887 16.634 hybrid contribution 0.182 0.860 -1.552 1.783 sum 12.435 -4.507 8.335 15.634 Atomic orbital electron populations 1.22129 0.88887 1.00255 1.00235 1.62190 1.06610 1.13692 1.42511 1.23818 0.92890 0.91781 1.05348 1.21867 0.97030 0.98874 0.96948 1.20647 0.93714 0.92407 0.83411 1.22702 0.93771 0.99171 1.00513 1.22748 0.98371 0.99447 0.96294 1.22210 0.83472 1.00766 0.95731 1.47531 1.04031 1.63255 1.21909 1.15606 0.82535 0.80428 0.81877 1.90206 1.37242 1.55614 1.59094 1.45877 1.12055 1.57493 1.21786 1.19011 0.77493 0.96026 0.92922 1.21231 0.93190 1.37325 1.06309 0.91985 1.24927 0.94919 0.95875 0.98199 1.69976 0.97710 1.45553 1.38961 0.86370 0.78284 0.79482 0.82821 1.19671 1.20789 1.20784 1.21866 0.97111 0.94979 1.00825 1.23882 0.92862 0.96864 1.00432 0.94601 0.93129 0.93158 0.94444 0.84882 0.91959 0.92371 0.90685 0.90217 0.90191 0.90688 0.90954 0.91783 0.78097 0.95675 0.95671 0.92483 0.92399 0.91961 0.94514 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.42 60.06 0.57 1.15 16 2 N -0.53 -9.32 4.85 -242.89 -1.18 -10.49 16 3 C -0.01 -0.21 5.03 -3.80 -0.02 -0.23 16 4 C -0.11 -1.58 4.90 -26.76 -0.13 -1.71 16 5 C 0.18 2.48 0.78 -131.27 -0.10 2.38 16 6 C -0.12 -1.22 6.01 -25.00 -0.15 -1.37 16 7 C -0.13 -1.18 7.09 -24.55 -0.17 -1.35 16 8 C 0.10 1.17 6.64 -2.49 -0.02 1.15 16 9 N -0.63 -9.40 2.82 -161.88 -0.46 -9.86 16 10 C 0.69 13.11 7.13 -86.92 -0.62 12.49 16 11 O -0.54 -11.32 6.43 5.29 0.03 -11.29 16 12 N -0.72 -14.67 5.51 -66.41 -0.37 -15.04 16 13 C 0.27 6.77 5.43 -5.19 -0.03 6.74 16 14 C -0.54 -14.34 9.28 -34.44 -0.32 -14.66 16 15 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.55 13.29 55.43 0.74 -24.82 16 18 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.11 -1.59 4.91 -26.76 -0.13 -1.72 16 23 C -0.01 -0.25 5.03 -3.81 -0.02 -0.27 16 24 H 0.04 0.70 7.40 -51.93 -0.38 0.32 16 25 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.14 2.78 3.56 17.14 0.06 2.84 16 29 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 32 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 7.20 -51.93 -0.37 0.44 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 6.98 6.76 -40.82 -0.28 6.71 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 44 H 0.14 2.85 3.59 16.98 0.06 2.91 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -29.14 326.57 -9.32 -38.45 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.74 Total: 8.33 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -1.24 Total: 4.26 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.26 Total: -60.20 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.03 Total: -11.29 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.14 -9.32 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334659239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.539 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds