Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46851 * 111.00014 * 2 1 4 4 C 1.53099 * 109.48433 * 173.83669 * 3 2 1 5 5 C 1.52849 * 109.26934 * 58.66705 * 4 3 2 6 6 C 1.54073 * 109.61944 * 182.51876 * 5 4 3 7 7 C 1.55213 * 102.87234 * 262.39165 * 6 5 4 8 8 C 1.54922 * 101.61424 * 324.71349 * 7 6 5 9 9 N 1.46771 * 110.04518 * 64.43728 * 5 4 3 10 10 C 1.34778 * 125.70263 * 300.51893 * 9 5 4 11 11 O 1.21590 * 120.00296 * 357.15428 * 10 9 5 12 12 N 1.34773 * 119.99874 * 177.14682 * 10 9 5 13 13 C 1.46507 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47185 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99629 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00100 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99625 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47533 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47397 * 120.00406 * 18 16 14 21 21 H 1.48502 * 109.47208 * 240.00274 * 18 16 14 22 22 C 1.52846 * 109.92169 * 303.08059 * 5 4 3 23 23 C 1.46842 * 111.00105 * 235.67905 * 2 1 3 24 24 H 1.09002 * 109.46928 * 60.00249 * 1 2 3 25 25 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47221 * 300.00171 * 1 2 3 27 27 H 1.08999 * 109.46922 * 53.82870 * 3 2 1 28 28 H 1.09001 * 109.46520 * 293.84064 * 3 2 1 29 29 H 1.08993 * 109.50325 * 298.72485 * 4 3 2 30 30 H 1.08996 * 109.50285 * 178.60016 * 4 3 2 31 31 H 1.08998 * 110.72643 * 144.04724 * 6 5 4 32 32 H 1.08997 * 110.73205 * 20.73957 * 6 5 4 33 33 H 1.09005 * 110.99729 * 206.63239 * 7 6 5 34 34 H 1.09007 * 110.99798 * 82.79931 * 7 6 5 35 35 H 1.09004 * 110.36420 * 155.71449 * 8 7 6 36 36 H 1.08997 * 110.36789 * 278.03515 * 8 7 6 37 37 H 0.97000 * 120.00517 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47087 * 300.00627 * 13 12 10 39 39 H 1.08996 * 109.46984 * 60.00349 * 13 12 10 40 40 H 0.97000 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.50221 * 176.85478 * 22 5 4 42 42 H 1.08998 * 109.50360 * 296.97261 * 22 5 4 43 43 H 1.08991 * 109.47020 * 306.16862 * 23 2 1 44 44 H 1.08997 * 109.46738 * 66.15875 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5179 1.3335 0.1550 5 6 4.1219 0.5242 -0.9924 6 6 5.6488 0.4279 -0.8099 7 6 6.1793 1.5571 -1.7332 8 6 5.1676 1.5029 -2.9052 9 7 3.8709 1.1996 -2.2711 10 6 2.6583 1.4937 -2.7805 11 8 1.6517 1.1491 -2.1920 12 7 2.5614 2.1700 -3.9423 13 6 1.2433 2.4892 -4.4963 14 6 1.4114 3.2426 -5.7906 15 1 2.4011 3.4613 -6.1634 16 6 0.3017 3.6517 -6.4993 17 7 -0.9034 3.3849 -6.0455 18 14 0.5102 4.5849 -8.1039 19 1 1.9568 4.7559 -8.3929 20 1 -0.1276 3.8220 -9.2068 21 1 -0.1328 5.9185 -7.9882 22 6 3.5179 -0.8797 -1.0140 23 6 1.9952 -0.7729 -1.1322 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.5592 1.9275 0.8296 28 1 1.7376 1.8589 -0.9400 29 1 3.7756 0.8660 1.1052 30 1 3.9114 2.3496 0.1301 31 1 6.0161 -0.5442 -1.1390 32 1 5.9259 0.6153 0.2274 33 1 7.1894 1.3369 -2.0787 34 1 6.1424 2.5231 -1.2295 35 1 5.1248 2.4658 -3.4142 36 1 5.4408 0.7142 -3.6060 37 1 3.3644 2.4447 -4.4120 38 1 0.6940 1.5663 -4.6822 39 1 0.6902 3.1044 -3.7866 40 1 -1.6841 3.6731 -6.5439 41 1 3.9113 -1.4321 -1.8673 42 1 3.7757 -1.4010 -0.0921 43 1 1.5593 -1.7718 -1.1241 44 1 1.7376 -0.2718 -2.0652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334659239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = 34.479076 kcal Electronic energy + Delta-G solvation = -24268.209370 eV Core-core repulsion = 21029.755947 eV Total energy + Delta-G solvation = -3238.453423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.54756 -39.12513 -38.21110 -36.02702 -34.44260 -33.12204 -32.38484 -31.74190 -29.04953 -28.25818 -25.54620 -24.86006 -24.17997 -23.38496 -22.05733 -21.71298 -19.93102 -18.56601 -18.18671 -18.15108 -17.37742 -16.68193 -16.31307 -16.18869 -15.38349 -15.16793 -14.82469 -14.68133 -14.50454 -14.15070 -14.01552 -13.89007 -13.61418 -13.31771 -13.23371 -12.98147 -12.88185 -12.80004 -12.48215 -12.40608 -12.14203 -11.96406 -11.83869 -11.66602 -11.43223 -11.19808 -11.04201 -10.73630 -10.47448 -9.36623 -8.92784 -8.65951 -8.29480 -6.45125 1.42387 1.43238 1.56292 1.81038 2.08036 2.37769 3.06040 3.20756 3.43353 3.68215 3.70659 3.88401 4.10136 4.23251 4.37311 4.41433 4.61110 4.62248 4.69419 4.73578 4.76446 4.80889 4.84236 4.97428 4.99716 5.03440 5.07374 5.10091 5.11898 5.22894 5.25651 5.29014 5.41989 5.45025 5.50083 5.71877 5.84476 5.89760 5.97827 6.31058 6.40238 6.45963 6.67741 7.23094 7.25613 7.77684 8.82643 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.005378 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.361519 B = 5205.231560 C = 6218.352280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.522 5.522 3 C -0.013 4.013 4 C -0.103 4.103 5 C 0.177 3.823 6 C -0.113 4.113 7 C -0.118 4.118 8 C 0.090 3.910 9 N -0.623 5.623 10 C 0.681 3.319 11 O -0.560 6.560 12 N -0.722 5.722 13 C 0.291 3.709 14 C -0.553 4.553 15 H 0.079 0.921 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.982 3.018 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.104 4.104 23 C -0.016 4.016 24 H 0.001 0.999 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.398 0.602 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.686 -4.986 9.263 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.246 5.246 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.092 3.908 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.032 4.032 9 N -0.360 5.360 10 C 0.387 3.613 11 O -0.447 6.447 12 N -0.375 5.375 13 C 0.168 3.832 14 C -0.591 4.591 15 H 0.097 0.903 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.177 1.177 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.142 4.142 23 C -0.142 4.142 24 H 0.019 0.981 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.233 0.767 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.892 -5.398 10.001 19.537 hybrid contribution -0.983 0.804 -1.487 1.955 sum 14.909 -4.594 8.514 17.773 Atomic orbital electron populations 1.22127 0.89264 1.00668 0.99145 1.62291 1.06391 1.13723 1.42176 1.23703 0.95611 0.91345 1.03365 1.21837 0.94309 0.99747 0.98235 1.20895 0.96629 0.91177 0.82132 1.22698 0.89997 1.00423 1.01992 1.22748 0.98897 0.99268 0.94653 1.22548 0.82272 1.01223 0.97142 1.47544 1.03742 1.62262 1.22473 1.15764 0.83774 0.80373 0.81422 1.90300 1.38836 1.56034 1.59485 1.45439 1.10467 1.58752 1.22798 1.18332 0.79285 0.93304 0.92259 1.21610 0.94071 1.37018 1.06395 0.90262 1.25998 0.94397 0.96744 1.02224 1.70136 0.98830 1.46987 1.40874 0.85154 0.79126 0.77628 0.77565 1.17738 1.20508 1.20497 1.21840 0.94423 0.96114 1.01854 1.23764 0.95560 0.96001 0.98902 0.98066 0.91942 0.91881 0.94942 0.87968 0.90383 0.91750 0.89100 0.88324 0.87066 0.90543 0.90910 0.90625 0.76686 0.99665 0.99663 0.92323 0.91717 0.90427 0.94956 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 9.42 127.69 1.20 2.54 16 2 N -0.52 -18.77 4.85 -922.36 -4.47 -23.24 16 3 C -0.01 -0.48 5.03 86.35 0.43 -0.05 16 4 C -0.10 -2.80 4.90 30.58 0.15 -2.65 16 5 C 0.18 4.37 0.78 3.81 0.00 4.37 16 6 C -0.11 -1.72 6.01 31.72 0.19 -1.53 16 7 C -0.12 -1.59 7.09 32.01 0.23 -1.36 16 8 C 0.09 1.83 6.64 86.85 0.58 2.40 16 9 N -0.62 -17.98 2.82 -784.31 -2.21 -20.19 16 10 C 0.68 26.79 7.13 179.06 1.28 28.07 16 11 O -0.56 -25.25 6.43 -4.00 -0.03 -25.27 16 12 N -0.72 -30.46 5.51 -482.29 -2.66 -33.12 16 13 C 0.29 15.75 5.43 85.63 0.46 16.21 16 14 C -0.55 -29.87 9.28 25.60 0.24 -29.63 16 15 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 18 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 19 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 22 C -0.10 -2.83 4.91 30.58 0.15 -2.68 16 23 C -0.02 -0.56 5.03 86.35 0.43 -0.12 16 24 H 0.00 0.03 7.40 -2.39 -0.02 0.01 16 25 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.10 4.52 3.56 6.41 0.02 4.54 16 29 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.17 7.84 -2.39 -0.02 1.15 16 32 H 0.10 1.22 7.79 -2.39 -0.02 1.20 16 33 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.07 1.48 7.20 -2.38 -0.02 1.46 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.40 14.47 6.76 -92.71 -0.63 13.84 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 44 H 0.11 4.68 3.59 3.80 0.01 4.70 16 Total: -1.00 -67.57 326.57 -0.83 -68.40 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.41 Total: 28.36 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.81 Total: 16.35 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -9.05 Total: -132.04 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.03 Total: -25.27 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -67.57 -0.83 -68.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334659239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.877 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds