Wall clock time and date at job start Tue Mar 31 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47283 * 2 1 4 4 C 1.46102 * 110.99853 * 293.95200 * 3 2 1 5 5 C 1.53336 * 110.15441 * 223.67552 * 4 3 2 6 6 C 1.51693 * 111.96263 * 292.90336 * 5 4 3 7 7 H 1.08996 * 109.91459 * 176.65640 * 6 5 4 8 8 C 1.53000 * 111.62474 * 299.51627 * 6 5 4 9 9 C 1.53672 * 104.27756 * 89.59413 * 8 6 5 10 10 C 1.53257 * 105.19561 * 16.54831 * 9 8 6 11 11 H 1.09000 * 109.71102 * 120.83455 * 10 9 8 12 12 C 1.48685 * 111.00185 * 59.56048 * 3 2 1 13 13 N 1.47279 * 109.46921 * 0.39785 * 10 9 8 14 14 C 1.34772 * 127.36904 * 162.25311 * 13 10 9 15 15 O 1.21588 * 120.00294 * 0.02562 * 14 13 10 16 16 N 1.34777 * 119.99936 * 180.02562 * 14 13 10 17 17 C 1.46501 * 120.00419 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47524 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99917 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00202 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00081 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47400 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47363 * 120.00100 * 22 20 18 25 25 H 1.48497 * 109.47296 * 239.99956 * 22 20 18 26 26 H 1.08996 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47765 * 300.00772 * 1 2 3 28 28 H 1.09006 * 109.46701 * 59.99956 * 1 2 3 29 29 H 1.08992 * 109.47820 * 239.99835 * 2 1 3 30 30 H 1.09001 * 109.46690 * 119.99315 * 2 1 3 31 31 H 1.09001 * 109.36015 * 103.46997 * 4 3 2 32 32 H 1.08999 * 109.24250 * 343.81374 * 4 3 2 33 33 H 1.09002 * 108.96939 * 53.51803 * 5 4 3 34 34 H 1.09003 * 108.97204 * 172.28795 * 5 4 3 35 35 H 1.09005 * 110.47607 * 208.20687 * 8 6 5 36 36 H 1.08992 * 110.47801 * 330.69250 * 8 6 5 37 37 H 1.09001 * 110.30525 * 257.61839 * 9 8 6 38 38 H 1.09000 * 110.31304 * 135.47949 * 9 8 6 39 39 H 1.08995 * 109.57084 * 295.83603 * 12 3 2 40 40 H 1.09001 * 109.56938 * 56.08063 * 12 3 2 41 41 H 0.97002 * 120.00186 * 359.97438 * 16 14 13 42 42 H 1.08994 * 109.46975 * 300.00045 * 17 16 14 43 43 H 1.09005 * 109.47006 * 59.99504 * 17 16 14 44 44 H 0.96998 * 120.00144 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6721 2.0632 -1.2465 5 6 2.8698 2.8715 -1.7599 6 6 3.2022 4.0356 -0.8459 7 1 4.0918 4.5503 -1.2089 8 6 2.0309 5.0128 -0.7287 9 6 1.2127 4.4830 0.4593 10 6 2.1529 3.5252 1.1993 11 1 2.2897 3.8646 2.2260 12 6 1.5343 2.1218 1.1968 13 7 3.4546 3.4862 0.5114 14 6 4.6281 3.0449 1.0059 15 8 4.6866 2.6171 2.1426 16 7 5.7369 3.0776 0.2404 17 6 7.0125 2.5974 0.7776 18 6 8.0851 2.7409 -0.2711 19 1 7.8412 3.1495 -1.2407 20 6 9.3781 2.3517 0.0076 21 7 9.6754 1.8557 1.1887 22 14 10.7079 2.5303 -1.2920 23 1 10.1198 3.1119 -2.5254 24 1 11.7786 3.4258 -0.7850 25 1 11.2827 1.1959 -1.5988 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 0.8319 2.7348 -1.0704 32 1 1.3907 1.3206 -1.9931 33 1 3.7374 2.2151 -1.8276 34 1 2.6383 3.2558 -2.7533 35 1 2.3935 6.0197 -0.5213 36 1 1.4341 5.0039 -1.6407 37 1 0.3319 3.9485 0.1036 38 1 0.9189 5.3044 1.1128 39 1 0.4479 2.2016 1.1606 40 1 1.8314 1.5880 2.0995 41 1 5.6902 3.4185 -0.6666 42 1 7.2812 3.1848 1.6554 43 1 6.9168 1.5483 1.0578 44 1 10.5850 1.5815 1.3846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334659747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:20 Heat of formation + Delta-G solvation = -37.076334 kcal Electronic energy + Delta-G solvation = -23804.445178 eV Core-core repulsion = 20562.888880 eV Total energy + Delta-G solvation = -3241.556298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88070 -39.67663 -37.41034 -36.10698 -34.44247 -33.63093 -32.52189 -31.51207 -29.08147 -27.73112 -27.09229 -24.99289 -24.08042 -22.87953 -21.94377 -20.56476 -20.48133 -19.20370 -18.10075 -17.33806 -17.06651 -16.68747 -16.04740 -15.93038 -15.76459 -15.14326 -14.99808 -14.84717 -14.36528 -14.25426 -14.07111 -14.01550 -13.59942 -13.31145 -13.10488 -12.91132 -12.83901 -12.75944 -12.62626 -12.34895 -12.22076 -12.16369 -11.76216 -11.64221 -11.58976 -11.43023 -11.07497 -10.96971 -10.80017 -9.94511 -9.22081 -8.99337 -8.27470 -6.44198 1.42608 1.45086 1.58231 1.82500 2.39000 2.42221 3.00623 3.07183 3.30705 3.67204 3.73154 3.96322 4.00241 4.13515 4.19030 4.23445 4.29757 4.43494 4.46724 4.56718 4.63784 4.74780 4.80458 4.90257 4.96791 5.00619 5.04875 5.06011 5.08078 5.11640 5.20529 5.27772 5.28612 5.29950 5.48254 5.50124 5.60941 5.80986 5.88623 6.21877 6.36072 6.46011 6.68362 7.25786 7.33405 7.86659 8.85537 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022028 B = 0.004603 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.795668 B = 6081.178249 C = 6296.979269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 N -0.561 5.561 4 C 0.063 3.937 5 C -0.124 4.124 6 C 0.123 3.877 7 H 0.073 0.927 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.141 3.859 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.610 5.610 14 C 0.723 3.277 15 O -0.656 6.656 16 N -0.723 5.723 17 C 0.291 3.709 18 C -0.551 4.551 19 H 0.081 0.919 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.988 3.012 23 H -0.253 1.253 24 H -0.277 1.277 25 H -0.278 1.278 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.398 0.602 42 H -0.019 1.019 43 H -0.022 1.022 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 4.873 -10.015 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.075 4.075 3 N -0.285 5.285 4 C -0.064 4.064 5 C -0.164 4.164 6 C 0.020 3.980 7 H 0.091 0.909 8 C -0.150 4.150 9 C -0.152 4.152 10 C 0.036 3.964 11 H 0.073 0.927 12 C -0.074 4.074 13 N -0.346 5.346 14 C 0.426 3.574 15 O -0.540 6.540 16 N -0.377 5.377 17 C 0.168 3.832 18 C -0.589 4.589 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.811 3.189 23 H -0.176 1.176 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.233 0.767 42 H -0.001 1.001 43 H -0.004 1.004 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.297 4.449 -9.026 24.463 hybrid contribution 0.522 -0.427 -0.010 0.674 sum -21.775 4.022 -9.036 23.916 Atomic orbital electron populations 1.22338 0.95988 1.02899 1.02279 1.22144 0.94384 0.89432 1.01571 1.61720 1.61845 1.02303 1.02646 1.22040 0.96631 0.97399 0.90356 1.21861 0.98899 0.96454 0.99140 1.21806 0.99497 0.94514 0.82166 0.90880 1.22107 0.95018 0.97810 1.00052 1.22386 0.97173 0.98416 0.97261 1.21534 0.82678 0.95499 0.96683 0.92674 1.22917 0.97623 0.94301 0.92518 1.47566 1.05529 1.65680 1.15839 1.15524 0.80104 0.78253 0.83564 1.90790 1.85833 1.56380 1.20953 1.45219 1.07786 1.67852 1.16812 1.18318 0.79524 0.91595 0.93762 1.21583 0.93631 1.43780 0.99926 0.90134 1.26093 1.01413 0.93883 0.98201 1.70163 1.20932 1.42464 1.23505 0.85065 0.77488 0.77966 0.78378 1.17607 1.20265 1.20367 0.91502 0.92530 0.91427 0.91016 0.93375 0.90958 0.90906 0.94347 0.87846 0.90256 0.86599 0.88192 0.88975 0.90835 0.94156 0.76742 1.00124 1.00399 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.33 71.98 0.67 -2.18 16 2 C 0.05 1.24 5.87 86.30 0.51 1.75 16 3 N -0.56 -14.89 4.04 -892.03 -3.60 -18.49 16 4 C 0.06 1.20 4.34 86.57 0.38 1.58 16 5 C -0.12 -2.61 5.36 30.28 0.16 -2.45 16 6 C 0.12 2.85 3.09 44.16 0.14 2.99 16 7 H 0.07 1.78 7.16 -2.39 -0.02 1.76 16 8 C -0.11 -1.59 6.12 30.82 0.19 -1.41 16 9 C -0.11 -1.73 5.74 30.91 0.18 -1.55 16 10 C 0.14 3.80 3.20 45.05 0.14 3.95 16 11 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 12 C 0.05 1.42 4.69 86.08 0.40 1.83 16 13 N -0.61 -20.53 2.04 -786.10 -1.61 -22.13 16 14 C 0.72 34.31 8.54 179.06 1.53 35.83 16 15 O -0.66 -37.85 16.76 -3.99 -0.07 -37.92 16 16 N -0.72 -35.15 5.52 -482.31 -2.66 -37.81 16 17 C 0.29 17.46 5.43 85.63 0.46 17.92 16 18 C -0.55 -31.75 9.28 25.60 0.24 -31.51 16 19 H 0.08 4.23 7.60 -2.91 -0.02 4.20 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 22 Si 0.99 43.75 29.54 68.60 2.03 45.78 16 23 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.92 6.49 -2.39 -0.02 0.90 16 28 H 0.07 0.91 7.17 -2.38 -0.02 0.89 16 29 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.02 4.92 -2.39 -0.01 1.00 16 32 H 0.07 1.23 7.14 -2.39 -0.02 1.21 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.12 0.92 7.95 -2.39 -0.02 0.90 16 37 H 0.10 1.06 5.67 -2.39 -0.01 1.05 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.38 5.80 -2.39 -0.01 1.36 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.40 16.65 6.83 -92.71 -0.63 16.02 16 42 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 43 H -0.02 -1.49 8.14 -2.38 -0.02 -1.51 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.76 333.36 0.19 -80.57 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.36 Total: 20.78 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 5.46 Total: 27.40 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -7.58 Total: -136.60 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.07 Total: -37.92 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -80.76 0.19 -80.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334659747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.492 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds