Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46845 * 110.99713 * 2 1 4 4 C 1.53059 * 109.65322 * 186.32769 * 3 2 1 5 5 C 1.53257 * 109.17071 * 300.23527 * 4 3 2 6 6 C 1.52330 * 109.22513 * 56.50176 * 5 4 3 7 7 C 1.54501 * 110.19153 * 66.58166 * 6 5 4 8 8 C 1.55282 * 101.41776 * 83.49306 * 7 6 5 9 9 N 1.47481 * 104.77194 * 36.69111 * 8 7 6 10 10 C 1.34777 * 125.65850 * 155.88279 * 9 8 7 11 11 O 1.21593 * 119.99923 * 179.69070 * 10 9 8 12 12 N 1.34777 * 120.00128 * 359.69200 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46905 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47159 * 240.00164 * 18 16 14 22 22 C 1.47192 * 108.67775 * 335.61358 * 9 8 7 23 23 C 1.46991 * 110.99821 * 124.11345 * 2 1 3 24 24 H 1.08998 * 109.46810 * 63.95885 * 1 2 3 25 25 H 1.08997 * 109.46747 * 183.95540 * 1 2 3 26 26 H 1.08994 * 109.47025 * 303.96045 * 1 2 3 27 27 H 1.08999 * 109.44583 * 66.27325 * 3 2 1 28 28 H 1.08999 * 109.44227 * 306.37927 * 3 2 1 29 29 H 1.08997 * 109.51985 * 180.32268 * 4 3 2 30 30 H 1.09006 * 109.57074 * 60.17248 * 4 3 2 31 31 H 1.09004 * 109.51156 * 296.57819 * 5 4 3 32 32 H 1.08996 * 109.55692 * 176.45228 * 5 4 3 33 33 H 1.09000 * 111.01744 * 201.75276 * 7 6 5 34 34 H 1.09004 * 111.01588 * 325.58777 * 7 6 5 35 35 H 1.09002 * 110.50549 * 277.83175 * 8 7 6 36 36 H 1.08996 * 110.32531 * 155.46021 * 8 7 6 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 39 39 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 40 40 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.90630 * 121.14833 * 22 9 8 42 42 H 1.09001 * 109.91078 * 242.41353 * 22 9 8 43 43 H 1.08997 * 109.44515 * 55.43018 * 23 2 1 44 44 H 1.09006 * 109.44095 * 295.52573 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5172 1.3382 -0.1589 5 6 4.1278 0.5498 1.0049 6 6 3.5135 -0.8436 1.0439 7 6 3.9345 -1.6471 -0.2067 8 6 5.3241 -2.1867 0.2280 9 7 5.1784 -2.4868 1.6646 10 6 5.9216 -3.3684 2.3624 11 8 5.7159 -3.5316 3.5496 12 7 6.8928 -4.0692 1.7442 13 6 7.6966 -5.0319 2.5014 14 6 8.6998 -5.6809 1.5831 15 1 8.7349 -5.4043 0.5398 16 6 9.5730 -6.6280 2.0750 17 7 9.5299 -6.9652 3.3454 18 14 10.8161 -7.4330 0.9367 19 1 10.6601 -6.8838 -0.4343 20 1 12.1896 -7.1546 1.4276 21 1 10.5871 -8.9000 0.9118 22 6 4.0909 -1.6591 2.2111 23 6 1.9958 -0.7696 1.1362 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8523 27 1 1.7391 1.8579 0.9409 28 1 1.5561 1.9281 -0.8275 29 1 3.9060 2.3564 -0.1528 30 1 3.7756 0.8552 -1.1013 31 1 3.9204 1.0656 1.9426 32 1 5.2057 0.4687 0.8649 33 1 3.2374 -2.4624 -0.4005 34 1 4.0240 -0.9972 -1.0772 35 1 6.0928 -1.4291 0.0750 36 1 5.5685 -3.0931 -0.3258 37 1 7.0567 -3.9393 0.7970 38 1 8.2209 -4.5149 3.3051 39 1 7.0447 -5.7957 2.9253 40 1 10.1438 -7.6317 3.6914 41 1 3.3166 -2.2974 2.6368 42 1 4.4834 -0.9876 2.9748 43 1 1.5813 -1.7775 1.1150 44 1 1.7122 -0.2806 2.0682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334699666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = -29.272589 kcal Electronic energy + Delta-G solvation = -22724.495373 eV Core-core repulsion = 19483.277471 eV Total energy + Delta-G solvation = -3241.217902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63546 -38.79834 -36.61814 -34.09633 -33.40440 -32.31290 -31.43623 -29.50973 -27.49932 -27.01329 -25.66189 -23.42737 -22.98117 -22.29907 -21.37584 -19.30230 -18.71812 -17.77132 -16.27173 -16.04079 -15.79034 -15.25504 -15.16453 -14.86387 -14.60544 -14.38117 -13.96394 -13.55853 -13.19626 -13.15260 -12.77225 -12.72175 -12.52952 -12.37467 -12.08101 -11.88794 -11.67822 -11.51523 -11.37407 -11.12915 -10.89633 -10.87683 -10.61442 -10.52854 -10.41131 -10.25881 -9.33868 -9.31039 -8.69642 -8.60430 -8.31035 -7.65441 -6.12077 -4.18276 3.21427 3.26375 3.33693 3.37302 3.62135 3.97704 4.33768 4.38856 4.44714 4.48907 4.78148 4.82616 4.98708 4.99502 5.12245 5.14701 5.18569 5.24030 5.25403 5.35859 5.42503 5.49265 5.54246 5.57106 5.63549 5.66403 5.75636 5.84793 5.91556 5.95437 6.05889 6.20369 6.26302 6.59777 6.76073 6.78199 7.25877 7.57037 7.61780 7.64223 7.94457 8.07834 8.80983 8.96797 9.38365 9.53197 10.98317 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037357 B = 0.003201 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.354398 B = 8746.526080 C = 8982.659340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.068 4.068 7 C -0.106 4.106 8 C 0.098 3.902 9 N -0.643 5.643 10 C 0.711 3.289 11 O -0.599 6.599 12 N -0.727 5.727 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.141 3.859 23 C 0.072 3.928 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.265 0.735 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 17.275 -9.911 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.069 4.069 7 C -0.144 4.144 8 C -0.025 4.025 9 N -0.384 5.384 10 C 0.413 3.587 11 O -0.479 6.479 12 N -0.379 5.379 13 C 0.146 3.854 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.017 3.983 23 C -0.056 4.056 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.219 0.781 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.886 16.695 -9.241 24.829 hybrid contribution 0.497 -0.039 -0.194 0.535 sum -15.389 16.656 -9.435 24.561 Atomic orbital electron populations 1.22349 0.87232 1.02018 1.00689 1.61940 1.07430 1.13698 1.43284 1.22103 0.95844 0.89086 1.00270 1.21655 0.94166 1.00137 0.99530 1.21509 1.00438 0.93983 0.98579 1.21068 0.94366 0.95493 0.95937 1.22717 0.95419 0.99340 0.96941 1.22354 0.97735 1.00228 0.82229 1.47626 1.37547 1.43754 1.09498 1.15687 0.79708 0.78718 0.84634 1.90871 1.72564 1.70565 1.13860 1.45727 1.35722 1.43582 1.12907 1.18984 0.88893 0.85979 0.91584 1.21262 1.17651 1.23128 0.95780 0.91941 1.24950 0.97438 0.96413 0.95269 1.69992 1.37489 1.31824 1.13019 0.86358 0.80814 0.79120 0.80589 1.19646 1.20833 1.20822 1.21537 0.89248 0.92679 0.94842 1.21945 0.93641 0.98611 0.91397 0.91362 0.91305 0.95766 0.95014 0.90923 0.91442 0.90680 0.91941 0.91055 0.90558 0.89630 0.91993 0.90985 0.78138 0.95765 0.95777 0.92545 0.91901 0.91954 0.90235 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.62 60.07 0.58 0.75 16 2 N -0.54 -4.52 4.69 -243.34 -1.14 -5.66 16 3 C 0.05 0.41 5.44 -3.82 -0.02 0.39 16 4 C -0.12 -0.87 5.89 -26.57 -0.16 -1.03 16 5 C -0.11 -0.97 4.64 -26.94 -0.12 -1.10 16 6 C -0.07 -0.69 0.55 -154.12 -0.09 -0.77 16 7 C -0.11 -1.08 5.67 -24.73 -0.14 -1.22 16 8 C 0.10 1.23 6.27 -2.30 -0.01 1.22 16 9 N -0.64 -10.72 3.33 -176.23 -0.59 -11.31 16 10 C 0.71 15.81 8.49 -86.92 -0.74 15.08 16 11 O -0.60 -15.89 16.67 5.28 0.09 -15.81 16 12 N -0.73 -16.53 5.51 -66.41 -0.37 -16.89 16 13 C 0.27 7.38 5.43 -5.19 -0.03 7.35 16 14 C -0.54 -15.03 9.28 -34.44 -0.32 -15.34 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.14 1.97 6.05 -3.33 -0.02 1.95 16 23 C 0.07 0.67 4.01 -4.17 -0.02 0.65 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.58 6.50 -51.93 -0.34 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.70 7.37 -51.93 -0.38 0.32 16 33 H 0.08 0.81 7.98 -51.93 -0.41 0.40 16 34 H 0.09 0.77 6.24 -51.93 -0.32 0.44 16 35 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 36 H 0.07 0.90 7.29 -51.93 -0.38 0.52 16 37 H 0.39 7.65 6.80 -40.82 -0.28 7.37 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 0.91 7.80 -51.93 -0.41 0.51 16 42 H 0.06 0.90 7.83 -51.93 -0.41 0.50 16 43 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -33.24 341.83 -9.82 -43.06 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.50 Total: 1.56 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.18 Total: 9.60 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -1.36 Total: -59.70 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.24 -9.82 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334699666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds