Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46845 * 110.99713 * 2 1 4 4 C 1.53059 * 109.65322 * 186.32769 * 3 2 1 5 5 C 1.53257 * 109.17071 * 300.23527 * 4 3 2 6 6 C 1.52330 * 109.22513 * 56.50176 * 5 4 3 7 7 C 1.54501 * 110.19153 * 66.58166 * 6 5 4 8 8 C 1.55282 * 101.41776 * 83.49306 * 7 6 5 9 9 N 1.47481 * 104.77194 * 36.69111 * 8 7 6 10 10 C 1.34777 * 125.65850 * 155.88279 * 9 8 7 11 11 O 1.21593 * 119.99923 * 179.69070 * 10 9 8 12 12 N 1.34777 * 120.00128 * 359.69200 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 9 14 14 C 1.50700 * 109.46769 * 179.72341 * 13 12 10 15 15 H 1.07997 * 120.00357 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46905 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47159 * 240.00164 * 18 16 14 22 22 C 1.47192 * 108.67775 * 335.61358 * 9 8 7 23 23 C 1.46991 * 110.99821 * 124.11345 * 2 1 3 24 24 H 1.08998 * 109.46810 * 63.95885 * 1 2 3 25 25 H 1.08997 * 109.46747 * 183.95540 * 1 2 3 26 26 H 1.08994 * 109.47025 * 303.96045 * 1 2 3 27 27 H 1.08999 * 109.44583 * 66.27325 * 3 2 1 28 28 H 1.08999 * 109.44227 * 306.37927 * 3 2 1 29 29 H 1.08997 * 109.51985 * 180.32268 * 4 3 2 30 30 H 1.09006 * 109.57074 * 60.17248 * 4 3 2 31 31 H 1.09004 * 109.51156 * 296.57819 * 5 4 3 32 32 H 1.08996 * 109.55692 * 176.45228 * 5 4 3 33 33 H 1.09000 * 111.01744 * 201.75276 * 7 6 5 34 34 H 1.09004 * 111.01588 * 325.58777 * 7 6 5 35 35 H 1.09002 * 110.50549 * 277.83175 * 8 7 6 36 36 H 1.08996 * 110.32531 * 155.46021 * 8 7 6 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 39 39 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 40 40 H 0.96999 * 120.00067 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.90630 * 121.14833 * 22 9 8 42 42 H 1.09001 * 109.91078 * 242.41353 * 22 9 8 43 43 H 1.08997 * 109.44515 * 55.43018 * 23 2 1 44 44 H 1.09006 * 109.44095 * 295.52573 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5172 1.3382 -0.1589 5 6 4.1278 0.5498 1.0049 6 6 3.5135 -0.8436 1.0439 7 6 3.9345 -1.6471 -0.2067 8 6 5.3241 -2.1867 0.2280 9 7 5.1784 -2.4868 1.6646 10 6 5.9216 -3.3684 2.3624 11 8 5.7159 -3.5316 3.5496 12 7 6.8928 -4.0692 1.7442 13 6 7.6966 -5.0319 2.5014 14 6 8.6998 -5.6809 1.5831 15 1 8.7349 -5.4043 0.5398 16 6 9.5730 -6.6280 2.0750 17 7 9.5299 -6.9652 3.3454 18 14 10.8161 -7.4330 0.9367 19 1 10.6601 -6.8838 -0.4343 20 1 12.1896 -7.1546 1.4276 21 1 10.5871 -8.9000 0.9118 22 6 4.0909 -1.6591 2.2111 23 6 1.9958 -0.7696 1.1362 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8523 27 1 1.7391 1.8579 0.9409 28 1 1.5561 1.9281 -0.8275 29 1 3.9060 2.3564 -0.1528 30 1 3.7756 0.8552 -1.1013 31 1 3.9204 1.0656 1.9426 32 1 5.2057 0.4687 0.8649 33 1 3.2374 -2.4624 -0.4005 34 1 4.0240 -0.9972 -1.0772 35 1 6.0928 -1.4291 0.0750 36 1 5.5685 -3.0931 -0.3258 37 1 7.0567 -3.9393 0.7970 38 1 8.2209 -4.5149 3.3051 39 1 7.0447 -5.7957 2.9253 40 1 10.1438 -7.6317 3.6914 41 1 3.3166 -2.2974 2.6368 42 1 4.4834 -0.9876 2.9748 43 1 1.5813 -1.7775 1.1150 44 1 1.7122 -0.2806 2.0682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334699666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -53.194223 kcal Electronic energy + Delta-G solvation = -22725.532693 eV Core-core repulsion = 19483.277471 eV Total energy + Delta-G solvation = -3242.255222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72040 -40.24079 -37.72765 -36.15642 -34.57552 -34.03393 -32.45546 -30.57268 -29.38205 -27.71205 -26.89420 -24.74349 -24.06727 -23.65706 -22.29319 -20.97440 -19.86790 -19.10879 -18.00440 -17.42412 -16.96748 -16.61608 -16.46439 -15.92382 -15.85473 -15.52633 -15.02052 -14.82120 -14.45813 -14.34560 -14.11515 -13.87923 -13.72317 -13.66589 -13.25919 -13.13693 -12.86851 -12.78743 -12.73879 -12.34296 -12.20695 -12.15656 -11.86688 -11.46418 -11.40330 -11.33185 -11.18691 -11.17083 -10.82076 -10.07630 -9.39442 -9.23913 -8.28703 -6.45516 1.43438 1.45574 1.58538 1.72634 2.18719 2.38939 2.93070 3.06176 3.25243 3.57941 3.59795 3.68277 4.07055 4.16936 4.20291 4.35640 4.39578 4.45891 4.53944 4.60767 4.63517 4.67903 4.73154 4.82511 4.86604 4.98456 5.01530 5.03535 5.07550 5.09979 5.15158 5.20439 5.25089 5.36812 5.43410 5.49060 5.52548 5.71036 5.84014 6.10019 6.18123 6.22188 6.66109 7.16389 7.24578 7.67814 8.84127 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037357 B = 0.003201 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.354398 B = 8746.526080 C = 8982.659340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.055 4.055 7 C -0.093 4.093 8 C 0.090 3.910 9 N -0.636 5.636 10 C 0.705 3.295 11 O -0.651 6.651 12 N -0.720 5.720 13 C 0.286 3.714 14 C -0.554 4.554 15 H 0.083 0.917 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.988 3.012 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.135 3.865 23 C 0.076 3.924 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.402 0.598 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.269 0.731 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 18.558 -13.172 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.074 4.074 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.056 4.056 7 C -0.131 4.131 8 C -0.032 4.032 9 N -0.375 5.375 10 C 0.407 3.593 11 O -0.534 6.534 12 N -0.374 5.374 13 C 0.163 3.837 14 C -0.592 4.592 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.811 3.189 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.204 1.204 22 C 0.011 3.989 23 C -0.052 4.052 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.238 0.762 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.122 18.042 -12.577 27.269 hybrid contribution 0.466 -0.368 0.868 1.052 sum -15.656 17.674 -11.709 26.354 Atomic orbital electron populations 1.22391 0.86299 1.02234 1.01389 1.61962 1.08331 1.14203 1.42366 1.22169 0.95869 0.88616 1.00779 1.21631 0.94028 1.00640 0.98540 1.21503 1.00102 0.93280 0.99530 1.20978 0.95027 0.95580 0.94003 1.22686 0.93507 0.99468 0.97422 1.22698 0.99999 1.01081 0.79386 1.47592 1.36592 1.41969 1.11299 1.15857 0.79911 0.79317 0.84231 1.90824 1.73951 1.72284 1.16368 1.45317 1.35665 1.43096 1.13348 1.18425 0.88476 0.85453 0.91349 1.21604 1.17624 1.23369 0.96558 0.89880 1.26097 0.99687 0.96871 0.96974 1.70156 1.38719 1.32598 1.15516 0.85061 0.77312 0.77760 0.78765 1.17549 1.20366 1.20369 1.21769 0.88182 0.92401 0.96522 1.21840 0.92709 0.98730 0.91966 0.90141 0.91337 0.95616 0.95240 0.89485 0.89992 0.90303 0.92160 0.91621 0.90726 0.87252 0.90343 0.90597 0.76182 0.99737 0.99775 0.92192 0.92931 0.92835 0.90714 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.62 127.69 1.23 1.51 16 2 N -0.54 -7.75 4.69 -923.80 -4.33 -12.08 16 3 C 0.05 0.64 5.44 86.33 0.47 1.11 16 4 C -0.11 -1.30 5.89 30.70 0.18 -1.12 16 5 C -0.11 -1.71 4.64 30.46 0.14 -1.57 16 6 C -0.05 -1.04 0.55 -51.93 -0.03 -1.06 16 7 C -0.09 -1.66 5.67 31.89 0.18 -1.48 16 8 C 0.09 2.11 6.27 86.98 0.54 2.66 16 9 N -0.64 -21.27 3.33 -829.74 -2.76 -24.03 16 10 C 0.71 32.47 8.49 179.05 1.52 33.99 16 11 O -0.65 -36.46 16.67 -4.01 -0.07 -36.53 16 12 N -0.72 -33.58 5.51 -482.30 -2.66 -36.24 16 13 C 0.29 16.59 5.43 85.63 0.46 17.05 16 14 C -0.55 -31.05 9.28 25.60 0.24 -30.82 16 15 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 18 Si 0.99 42.92 29.54 68.60 2.03 44.94 16 19 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.14 3.79 6.05 86.47 0.52 4.31 16 23 C 0.08 1.29 4.01 86.03 0.35 1.64 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.79 8.04 -2.39 -0.02 0.77 16 26 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.90 6.50 -2.38 -0.02 0.88 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.15 7.37 -2.39 -0.02 1.13 16 33 H 0.07 1.41 7.98 -2.39 -0.02 1.39 16 34 H 0.11 1.53 6.24 -2.38 -0.01 1.52 16 35 H 0.08 1.64 7.68 -2.39 -0.02 1.62 16 36 H 0.08 1.75 7.29 -2.39 -0.02 1.73 16 37 H 0.40 15.79 6.80 -92.71 -0.63 15.16 16 38 H -0.02 -1.00 8.14 -2.38 -0.02 -1.01 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.05 1.58 7.80 -2.38 -0.02 1.56 16 42 H 0.05 1.60 7.83 -2.39 -0.02 1.58 16 43 H 0.07 1.35 8.01 -2.39 -0.02 1.33 16 44 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -74.95 341.83 -0.89 -75.84 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.34 Total: 18.26 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: 6.27 Total: 26.87 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -9.46 Total: -129.38 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.07 Total: -36.53 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.95 -0.89 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334699666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.648 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds