Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.42402 * 2 1 4 4 C 1.54950 * 109.42551 * 119.89237 * 2 1 3 5 5 N 1.44679 * 109.51442 * 189.56104 * 4 2 1 6 6 C 1.34775 * 118.54931 * 90.91884 * 5 4 2 7 7 O 1.21586 * 120.00161 * 184.71530 * 6 5 4 8 8 N 1.34777 * 119.99977 * 4.71194 * 6 5 4 9 9 C 1.46502 * 120.00171 * 184.99978 * 8 6 5 10 10 C 1.50693 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00566 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00072 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00028 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47438 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46894 * 120.00492 * 14 12 10 17 17 H 1.48498 * 109.46973 * 240.00201 * 14 12 10 18 18 C 1.47788 * 122.89418 * 270.89665 * 5 4 2 19 19 C 1.54037 * 111.54612 * 41.91653 * 18 5 4 20 20 N 1.44761 * 109.68313 * 39.98464 * 19 18 5 21 21 C 1.46899 * 110.99957 * 142.14036 * 20 19 18 22 22 C 1.52999 * 117.50017 * 257.38974 * 21 20 19 23 23 C 1.52997 * 117.49967 * 188.76460 * 21 20 19 24 24 C 1.46270 * 110.63734 * 265.83259 * 20 19 18 25 25 H 1.08994 * 109.47207 * 300.10926 * 1 2 3 26 26 H 1.09003 * 109.46806 * 60.10667 * 1 2 3 27 27 H 1.08998 * 109.47293 * 180.10737 * 1 2 3 28 28 H 1.09003 * 109.46115 * 309.57168 * 4 2 1 29 29 H 1.08993 * 109.45825 * 69.54935 * 4 2 1 30 30 H 0.97006 * 120.00095 * 5.00476 * 8 6 5 31 31 H 1.09000 * 109.46903 * 300.00161 * 9 8 6 32 32 H 1.09006 * 109.46855 * 60.00191 * 9 8 6 33 33 H 0.96997 * 120.00192 * 179.97438 * 13 12 10 34 34 H 1.08990 * 109.07895 * 281.37645 * 18 5 4 35 35 H 1.08998 * 109.05579 * 162.43690 * 18 5 4 36 36 H 1.09000 * 109.43393 * 279.91877 * 19 18 5 37 37 H 1.09005 * 109.43351 * 160.05046 * 19 18 5 38 38 H 1.09006 * 115.55158 * 43.09554 * 21 20 19 39 39 H 1.09002 * 117.49718 * 359.97438 * 22 21 20 40 40 H 1.08994 * 117.50185 * 145.01363 * 22 21 20 41 41 H 1.09001 * 117.49921 * 214.97474 * 23 21 20 42 42 H 1.09002 * 117.49688 * 359.97438 * 23 21 20 43 43 H 1.08998 * 108.49970 * 326.48663 * 24 20 19 44 44 H 1.08999 * 108.37612 * 208.92538 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0454 -0.7283 1.2669 5 7 3.4743 -0.5362 1.3872 6 6 3.9251 0.5184 2.0951 7 8 5.1169 0.7544 2.1421 8 7 3.0548 1.3115 2.7508 9 6 3.5319 2.5192 3.4291 10 6 2.3691 3.2221 4.0807 11 1 1.3739 2.8107 3.9975 12 6 2.5754 4.3905 4.7830 13 7 3.7871 4.8918 4.8839 14 14 1.1338 5.2622 5.5901 15 1 -0.1140 4.5001 5.3302 16 1 1.3645 5.3487 7.0545 17 1 1.0049 6.6305 5.0276 18 6 4.4613 -1.4456 0.7684 19 6 4.0406 -1.8520 -0.6565 20 7 3.4770 -0.7090 -1.3432 21 6 3.8735 -0.6964 -2.7576 22 6 4.9826 0.2728 -3.1717 23 6 3.5333 0.5510 -3.5755 24 6 2.0207 -0.6923 -1.2069 25 1 -0.3633 0.5155 0.8889 26 1 -0.3633 0.5122 -0.8910 27 1 -0.3634 -1.0276 0.0019 28 1 1.5487 -0.3206 2.1474 29 1 1.8275 -1.7932 1.1874 30 1 2.1124 1.0826 2.7738 31 1 4.2623 2.2440 4.1900 32 1 3.9978 3.1843 2.7019 33 1 3.9322 5.7139 5.3777 34 1 4.5534 -2.3419 1.3817 35 1 5.4284 -0.9447 0.7248 36 1 3.2959 -2.6460 -0.6022 37 1 4.9126 -2.2102 -1.2039 38 1 3.8301 -1.6593 -3.2666 39 1 5.4178 0.9013 -2.3947 40 1 5.6693 -0.0525 -3.9531 41 1 3.2666 0.4089 -4.6228 42 1 3.0149 1.3622 -3.0642 43 1 1.6637 -1.7219 -1.1843 44 1 1.5992 -0.2003 -2.0834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334702037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = 11.642770 kcal Electronic energy + Delta-G solvation = -23304.982402 eV Core-core repulsion = 20065.538723 eV Total energy + Delta-G solvation = -3239.443679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17186 -38.55646 -36.44134 -34.45312 -33.66925 -33.59754 -32.09503 -28.87582 -26.97044 -26.08353 -25.54410 -22.85704 -22.38145 -21.59307 -20.80901 -20.21044 -18.91126 -17.83677 -16.86971 -16.05362 -15.89213 -15.23511 -15.17729 -14.81797 -14.52897 -14.24643 -13.63264 -13.30429 -13.10973 -13.00512 -12.80580 -12.41225 -12.14287 -11.99269 -11.86887 -11.58752 -11.53892 -11.40486 -11.12092 -10.87423 -10.85917 -10.82087 -10.54908 -10.48819 -10.22910 -10.18670 -9.27294 -9.16057 -8.65487 -8.35028 -8.17587 -7.56965 -6.09007 -4.14841 3.27657 3.29857 3.35322 3.38644 3.63207 3.74017 4.07713 4.37137 4.72639 4.81510 4.82823 4.86059 4.93088 4.96009 5.04543 5.23147 5.27087 5.28826 5.42696 5.44576 5.50051 5.54969 5.59010 5.64305 5.72241 5.77034 5.93558 5.94166 6.04872 6.15008 6.17631 6.20392 6.40201 7.01332 7.10088 7.14756 7.28709 7.62113 7.67125 7.67891 7.98139 8.11759 8.85507 9.05041 9.44141 9.60010 11.01422 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.004399 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.801372 B = 6364.199001 C = 6582.159151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.125 3.875 5 N -0.621 5.621 6 C 0.696 3.304 7 O -0.601 6.601 8 N -0.731 5.731 9 C 0.267 3.733 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.902 3.098 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.140 3.860 19 C 0.050 3.950 20 N -0.502 5.502 21 C 0.005 3.995 22 C -0.161 4.161 23 C -0.172 4.172 24 C 0.072 3.928 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.385 0.615 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.031 0.969 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -14.585 -15.248 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.000 4.000 5 N -0.359 5.359 6 C 0.397 3.603 7 O -0.480 6.480 8 N -0.385 5.385 9 C 0.146 3.854 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.016 3.984 19 C -0.080 4.080 20 N -0.225 5.225 21 C -0.103 4.103 22 C -0.199 4.199 23 C -0.209 4.209 24 C -0.055 4.055 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.219 0.781 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.049 0.951 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.074 -13.811 -14.896 20.718 hybrid contribution -1.549 -0.264 0.051 1.572 sum -5.622 -14.075 -14.845 21.216 Atomic orbital electron populations 1.21733 0.94229 1.01588 1.02499 1.21041 0.95228 1.01855 0.95314 0.89678 1.21424 0.81629 0.99728 0.97234 1.46702 1.05121 1.28794 1.55259 1.16109 0.85651 0.79473 0.79042 1.90830 1.14885 1.73850 1.68477 1.45854 1.09629 1.27371 1.55647 1.18935 0.95204 0.79647 0.91641 1.21261 0.93886 1.08527 1.33970 0.92059 1.24936 0.96009 0.96940 0.96120 1.69992 1.20335 1.20913 1.41091 0.86391 0.82143 0.79456 0.79074 1.19690 1.20866 1.20866 1.21621 0.93520 0.92462 0.90814 1.22381 0.99487 0.90785 0.95326 1.60502 1.09944 1.42522 1.09520 1.22414 1.05398 0.93821 0.88708 1.23066 0.91370 1.02606 1.02859 1.23009 0.99432 0.99166 0.99319 1.20962 0.86857 0.99029 0.98643 0.91703 0.92541 0.92878 0.90686 0.91528 0.78075 0.95866 0.95978 0.92606 0.92761 0.88925 0.94108 0.90415 0.89837 0.87831 0.88983 0.88954 0.88242 0.95063 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.14 37.16 0.34 -1.05 16 2 C -0.11 -1.39 2.87 -92.22 -0.27 -1.66 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.13 1.64 4.68 -3.99 -0.02 1.62 16 5 N -0.62 -10.28 2.53 -177.94 -0.45 -10.73 16 6 C 0.70 15.33 8.21 -86.92 -0.71 14.61 16 7 O -0.60 -15.79 15.62 5.29 0.08 -15.70 16 8 N -0.73 -16.50 5.40 -66.41 -0.36 -16.86 16 9 C 0.27 7.39 5.43 -5.20 -0.03 7.36 16 10 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 11 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 14 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.14 2.00 6.49 -2.79 -0.02 1.98 16 19 C 0.05 0.56 5.52 -4.43 -0.02 0.53 16 20 N -0.50 -6.18 4.28 -231.58 -0.99 -7.17 16 21 C 0.01 0.05 4.73 -67.72 -0.32 -0.27 16 22 C -0.16 -1.73 10.46 -26.73 -0.28 -2.01 16 23 C -0.17 -1.73 9.50 -26.73 -0.25 -1.98 16 24 C 0.07 0.81 4.12 -6.80 -0.03 0.78 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.01 5.89 -51.93 -0.31 0.70 16 29 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.38 7.59 5.81 -40.82 -0.24 7.36 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.57 6.92 -51.93 -0.36 1.21 16 36 H 0.04 0.40 7.14 -51.93 -0.37 0.03 16 37 H 0.08 0.78 7.64 -51.93 -0.40 0.38 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 43 H 0.03 0.32 7.18 -51.93 -0.37 -0.06 16 44 H 0.07 0.70 6.89 -51.93 -0.36 0.34 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -33.18 346.98 -10.23 -43.41 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.42 Total: 5.22 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.03 Total: 6.35 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.07 Total: -60.64 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.18 -10.23 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334702037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.049 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds