Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 110.41004 * 2 1 4 4 C 1.54907 * 110.36857 * 237.70816 * 2 1 3 5 5 H 1.09000 * 111.00420 * 322.22179 * 4 2 1 6 6 N 1.46900 * 111.03718 * 86.06117 * 4 2 1 7 7 C 1.48538 * 110.99742 * 166.42473 * 6 4 2 8 8 C 1.54940 * 103.22563 * 159.71950 * 7 6 4 9 9 C 1.54589 * 102.92252 * 322.58575 * 8 7 6 10 10 C 1.47899 * 110.99978 * 283.81873 * 6 4 2 11 11 C 1.55159 * 101.57910 * 204.14921 * 4 2 1 12 12 C 1.54318 * 102.94251 * 35.50120 * 11 4 2 13 13 N 1.47024 * 107.27331 * 337.80406 * 12 11 4 14 14 C 1.34778 * 125.64816 * 178.98705 * 13 12 11 15 15 O 1.21586 * 119.99707 * 179.97438 * 14 13 12 16 16 N 1.34772 * 120.00275 * 359.97438 * 14 13 12 17 17 C 1.46492 * 120.00170 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47476 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99304 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00276 * 179.97438 * 18 17 16 21 21 N 1.31505 * 120.00000 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99837 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46858 * 89.99918 * 22 20 18 24 24 H 1.48498 * 109.47014 * 209.99883 * 22 20 18 25 25 H 1.48501 * 109.47554 * 330.00007 * 22 20 18 26 26 H 1.09001 * 109.47359 * 182.29592 * 1 2 3 27 27 H 1.09003 * 109.47799 * 302.29431 * 1 2 3 28 28 H 1.09005 * 109.47568 * 62.29483 * 1 2 3 29 29 H 1.09005 * 110.66653 * 278.15195 * 7 6 4 30 30 H 1.08995 * 110.67067 * 41.28152 * 7 6 4 31 31 H 1.08994 * 110.72067 * 204.22571 * 8 7 6 32 32 H 1.09000 * 110.72392 * 80.94483 * 8 7 6 33 33 H 1.09003 * 110.30727 * 263.04347 * 9 8 7 34 34 H 1.08997 * 110.31163 * 140.86970 * 9 8 7 35 35 H 1.09005 * 109.91716 * 333.50721 * 10 6 4 36 36 H 1.09002 * 109.91968 * 94.60571 * 10 6 4 37 37 H 1.09005 * 110.71614 * 153.86232 * 11 4 2 38 38 H 1.08999 * 110.72184 * 277.13445 * 11 4 2 39 39 H 1.09000 * 109.88406 * 97.22472 * 12 11 4 40 40 H 1.09006 * 109.88451 * 218.38764 * 12 11 4 41 41 H 0.97005 * 119.99817 * 359.97438 * 16 14 13 42 42 H 1.09005 * 109.46792 * 299.99222 * 17 16 14 43 43 H 1.08992 * 109.47775 * 59.99812 * 17 16 14 44 44 H 0.97006 * 120.00224 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0217 0.0000 4 6 2.0691 -0.7758 -1.2276 5 1 1.4511 -1.6480 -1.4408 6 7 2.1644 0.0989 -2.4040 7 6 2.9724 -0.5370 -3.4760 8 6 2.5355 0.2283 -4.7504 9 6 1.0236 0.4521 -4.5180 10 6 0.8300 0.3404 -2.9943 11 6 3.4778 -1.1996 -0.7341 12 6 3.2493 -1.4767 0.7667 13 7 2.0430 -0.7383 1.1683 14 6 1.4973 -0.7361 2.4006 15 8 0.4940 -0.0852 2.6200 16 7 2.0636 -1.4554 3.3897 17 6 1.4701 -1.4534 4.7290 18 6 2.2886 -2.3289 5.6426 19 1 3.1633 -2.8364 5.2633 20 6 1.9209 -2.4820 6.9626 21 7 0.8562 -1.8637 7.4246 22 14 2.9352 -3.5678 8.0947 23 1 3.9948 -2.7538 8.7428 24 1 2.0551 -4.1549 9.1368 25 1 3.5620 -4.6578 7.3046 26 1 -0.3634 -1.0268 0.0412 27 1 -0.3635 0.5490 0.8687 28 1 -0.3634 0.4778 -0.9099 29 1 4.0372 -0.3972 -3.2894 30 1 2.7317 -1.5965 -3.5620 31 1 2.7034 -0.3776 -5.6407 32 1 3.0592 1.1812 -4.8266 33 1 0.4444 -0.3161 -5.0303 34 1 0.7301 1.4428 -4.8649 35 1 0.1659 -0.4930 -2.7646 36 1 0.4122 1.2672 -2.6012 37 1 3.8105 -2.1022 -1.2467 38 1 4.1945 -0.3900 -0.8721 39 1 3.1014 -2.5444 0.9282 40 1 4.1064 -1.1278 1.3428 41 1 2.8638 -1.9750 3.2146 42 1 1.4559 -0.4355 5.1187 43 1 0.4510 -1.8362 4.6755 44 1 0.5977 -1.9711 8.3534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334899058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -22.947649 kcal Electronic energy + Delta-G solvation = -22709.044494 eV Core-core repulsion = 19468.100862 eV Total energy + Delta-G solvation = -3240.943632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29951 -38.83074 -36.75999 -34.17277 -32.73803 -32.04730 -31.35167 -29.29513 -28.93279 -26.82731 -25.26307 -23.20834 -22.32796 -21.51065 -20.88275 -20.34085 -19.07973 -17.62344 -16.91550 -16.22789 -15.85578 -15.30337 -14.95164 -14.52295 -14.40892 -14.19084 -13.85894 -13.58659 -13.21967 -13.00744 -12.75301 -12.54183 -12.40582 -12.05681 -11.91321 -11.77111 -11.56451 -11.50958 -11.26713 -11.17730 -10.95501 -10.92356 -10.85625 -10.73876 -10.56879 -10.24659 -9.33563 -9.10226 -8.69316 -8.67221 -8.29882 -7.66944 -6.12504 -4.18809 3.10978 3.26544 3.32633 3.35331 3.78467 3.99354 4.20566 4.34690 4.37851 4.59536 4.61759 4.68528 4.94512 5.00056 5.01748 5.22414 5.22796 5.23568 5.30348 5.40275 5.50384 5.53555 5.56318 5.63756 5.69143 5.70724 5.76431 5.81409 5.89283 5.95497 6.01047 6.31332 6.48817 6.62527 6.74522 6.92344 7.26665 7.57092 7.61426 7.64810 7.94206 8.07648 8.80364 8.96836 9.38522 9.53293 10.97806 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042450 B = 0.003224 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.444650 B = 8681.434230 C = 9219.697410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.077 0.923 4 C 0.062 3.938 5 H 0.060 0.940 6 N -0.505 5.505 7 C 0.036 3.964 8 C -0.124 4.124 9 C -0.132 4.132 10 C 0.033 3.967 11 C -0.122 4.122 12 C 0.103 3.897 13 N -0.642 5.642 14 C 0.713 3.287 15 O -0.593 6.593 16 N -0.728 5.728 17 C 0.268 3.732 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 1.561 -24.379 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.065 3.935 3 H 0.095 0.905 4 C -0.047 4.047 5 H 0.078 0.922 6 N -0.230 5.230 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.170 4.170 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.021 4.021 13 N -0.384 5.384 14 C 0.415 3.585 15 O -0.472 6.472 16 N -0.380 5.380 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.218 0.782 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.338 2.540 -23.692 24.219 hybrid contribution 0.554 -1.707 0.397 1.838 sum 4.892 0.833 -23.294 23.817 Atomic orbital electron populations 1.22252 0.94238 1.02572 1.03139 1.21429 0.94664 0.95105 0.82326 0.90528 1.23081 0.96755 0.94052 0.90836 0.92241 1.64694 1.11516 1.42113 1.04668 1.23212 0.98950 0.96477 0.90543 1.22476 0.95740 1.00878 0.97093 1.22423 0.96674 1.02258 0.95691 1.22989 0.90859 1.01805 0.93788 1.22671 0.96782 1.02022 0.94562 1.21871 0.88611 0.96672 0.94921 1.47640 1.29395 1.52457 1.08894 1.15652 0.82951 0.80983 0.78898 1.90814 1.26691 1.48294 1.81412 1.45743 1.31085 1.49739 1.11397 1.18970 0.93884 0.97413 0.75089 1.21224 1.12066 1.29653 0.94975 0.92036 1.24939 0.95217 0.95927 0.97938 1.69978 1.24434 1.42144 1.15750 0.86419 0.79809 0.80404 0.80280 1.20478 1.21025 1.19794 0.93142 0.89125 0.92580 0.89844 0.93751 0.91176 0.90681 0.91624 0.90976 0.93394 0.89924 0.90468 0.89624 0.91859 0.91519 0.78231 0.95747 0.95781 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.30 37.16 0.31 -2.19 16 2 C 0.17 2.46 3.33 -66.42 -0.22 2.24 16 3 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 4 C 0.06 0.70 2.04 -65.56 -0.13 0.56 16 5 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 6 N -0.51 -4.97 5.15 -219.93 -1.13 -6.11 16 7 C 0.04 0.28 5.69 -1.89 -0.01 0.27 16 8 C -0.12 -0.82 7.06 -24.87 -0.18 -1.00 16 9 C -0.13 -0.93 6.93 -25.37 -0.18 -1.11 16 10 C 0.03 0.30 5.06 -2.75 -0.01 0.29 16 11 C -0.12 -1.21 5.48 -24.90 -0.14 -1.35 16 12 C 0.10 1.31 6.15 -3.07 -0.02 1.29 16 13 N -0.64 -10.78 3.24 -168.73 -0.55 -11.33 16 14 C 0.71 15.61 8.27 -86.92 -0.72 14.89 16 15 O -0.59 -15.09 14.06 5.29 0.07 -15.02 16 16 N -0.73 -16.40 5.51 -66.42 -0.37 -16.77 16 17 C 0.27 7.35 5.43 -5.20 -0.03 7.32 16 18 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.69 6.09 -51.93 -0.32 1.37 16 28 H 0.06 0.69 5.60 -51.93 -0.29 0.40 16 29 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 30 H 0.04 0.34 8.02 -51.93 -0.42 -0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.45 7.17 -51.93 -0.37 0.08 16 36 H 0.08 0.78 7.41 -51.93 -0.38 0.39 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.39 7.61 7.31 -40.82 -0.30 7.31 16 42 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -32.41 341.48 -10.35 -42.77 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.50 Total: 3.38 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.74 Total: 7.58 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.31 Total: -59.96 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.07 Total: -15.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.41 -10.35 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334899058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.820 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds